Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2DU4:C52:C56
Extra
PDB:
ATOM 1 O3' G A 51 5.814 73.290 -56.473 1.00163.45 O
ATOM 2 P U A 52 4.618 72.488 -57.175 1.00145.63 P
ATOM 3 OP1 U A 52 3.908 73.480 -58.022 1.00139.53 O
ATOM 4 OP2 U A 52 3.878 71.733 -56.122 1.00118.13 O
ATOM 5 O5' U A 52 5.364 71.433 -58.105 1.00139.85 O
ATOM 6 C5' U A 52 6.262 71.854 -59.127 1.00130.60 C
ATOM 7 C4' U A 52 6.885 70.648 -59.786 1.00129.73 C
ATOM 8 O4' U A 52 7.884 70.054 -58.909 1.00127.41 O
ATOM 9 C3' U A 52 5.924 69.497 -60.038 1.00131.30 C
ATOM 10 O3' U A 52 5.089 69.723 -61.169 1.00139.62 O
ATOM 11 C2' U A 52 6.883 68.320 -60.194 1.00121.65 C
ATOM 12 O2' U A 52 7.514 68.241 -61.462 1.00105.27 O
ATOM 13 C1' U A 52 7.912 68.642 -59.107 1.00116.48 C
ATOM 14 N1 U A 52 7.608 67.971 -57.830 1.00114.14 N
ATOM 15 C2 U A 52 8.064 66.670 -57.679 1.00105.47 C
ATOM 16 O2 U A 52 8.679 66.087 -58.559 1.00 90.76 O
ATOM 17 N3 U A 52 7.771 66.080 -56.464 1.00110.28 N
ATOM 18 C4 U A 52 7.072 66.646 -55.398 1.00120.24 C
ATOM 19 O4 U A 52 6.880 65.977 -54.361 1.00103.43 O
ATOM 20 C5 U A 52 6.621 67.998 -55.636 1.00103.84 C
ATOM 21 C6 U A 52 6.898 68.599 -56.813 1.00107.64 C
ATOM 22 P U A 53 3.483 69.608 -61.013 1.00140.68 P
ATOM 23 OP1 U A 53 2.919 70.157 -62.282 1.00110.24 O
ATOM 24 OP2 U A 53 3.027 70.148 -59.696 1.00 99.18 O
ATOM 25 O5' U A 53 3.204 68.043 -60.977 1.00112.12 O
TER
ATOM 1 O3' G B 55 4.494 60.136 -54.240 1.00133.15 O
ATOM 2 P A B 56 5.674 61.131 -53.785 1.00133.80 P
ATOM 3 OP1 A B 56 5.655 61.166 -52.298 1.00100.69 O
ATOM 4 OP2 A B 56 5.593 62.404 -54.560 1.00101.43 O
ATOM 5 O5' A B 56 6.999 60.386 -54.260 1.00146.98 O
ATOM 6 C5' A B 56 7.570 59.319 -53.502 1.00145.53 C
ATOM 7 C4' A B 56 9.057 59.535 -53.377 1.00139.15 C
ATOM 8 O4' A B 56 9.531 59.887 -54.699 1.00122.37 O
ATOM 9 C3' A B 56 9.456 60.703 -52.476 1.00141.11 C
ATOM 10 O3' A B 56 9.576 60.328 -51.078 1.00141.36 O
ATOM 11 C2' A B 56 10.687 61.312 -53.146 1.00132.39 C
ATOM 12 O2' A B 56 11.914 60.808 -52.681 1.00166.87 O
ATOM 13 C1' A B 56 10.507 60.896 -54.607 1.00123.51 C
ATOM 14 N9 A B 56 10.204 61.934 -55.586 1.00114.36 N
ATOM 15 C8 A B 56 9.332 62.995 -55.530 1.00111.82 C
ATOM 16 N7 A B 56 9.332 63.734 -56.619 1.00112.82 N
ATOM 17 C5 A B 56 10.268 63.115 -57.449 1.00117.44 C
ATOM 18 C6 A B 56 10.745 63.403 -58.770 1.00113.51 C
ATOM 19 N6 A B 56 10.310 64.423 -59.523 1.00107.19 N
ATOM 20 N1 A B 56 11.694 62.581 -59.291 1.00 94.80 N
ATOM 21 C2 A B 56 12.115 61.538 -58.553 1.00 99.43 C
ATOM 22 N3 A B 56 11.739 61.160 -57.326 1.00101.22 N
ATOM 23 C4 A B 56 10.809 62.003 -56.823 1.00120.19 C
ATOM 24 P A B 57 10.640 59.191 -50.591 1.00136.30 P
ATOM 25 OP1 A B 57 10.655 58.096 -51.606 1.00120.05 O
ATOM 26 OP2 A B 57 10.318 58.859 -49.174 1.00112.93 O
ATOM 27 O5' A B 57 12.068 59.913 -50.628 1.00140.54 O
TER
ATOM 2 P U A 52 4.618 72.488 -57.175 1.00145.63 P
ATOM 3 OP1 U A 52 3.908 73.480 -58.022 1.00139.53 O
ATOM 4 OP2 U A 52 3.878 71.733 -56.122 1.00118.13 O
ATOM 5 O5' U A 52 5.364 71.433 -58.105 1.00139.85 O
ATOM 6 C5' U A 52 6.262 71.854 -59.127 1.00130.60 C
ATOM 7 C4' U A 52 6.885 70.648 -59.786 1.00129.73 C
ATOM 8 O4' U A 52 7.884 70.054 -58.909 1.00127.41 O
ATOM 9 C3' U A 52 5.924 69.497 -60.038 1.00131.30 C
ATOM 10 O3' U A 52 5.089 69.723 -61.169 1.00139.62 O
ATOM 11 C2' U A 52 6.883 68.320 -60.194 1.00121.65 C
ATOM 12 O2' U A 52 7.514 68.241 -61.462 1.00105.27 O
ATOM 13 C1' U A 52 7.912 68.642 -59.107 1.00116.48 C
ATOM 14 N1 U A 52 7.608 67.971 -57.830 1.00114.14 N
ATOM 15 C2 U A 52 8.064 66.670 -57.679 1.00105.47 C
ATOM 16 O2 U A 52 8.679 66.087 -58.559 1.00 90.76 O
ATOM 17 N3 U A 52 7.771 66.080 -56.464 1.00110.28 N
ATOM 18 C4 U A 52 7.072 66.646 -55.398 1.00120.24 C
ATOM 19 O4 U A 52 6.880 65.977 -54.361 1.00103.43 O
ATOM 20 C5 U A 52 6.621 67.998 -55.636 1.00103.84 C
ATOM 21 C6 U A 52 6.898 68.599 -56.813 1.00107.64 C
ATOM 22 P U A 53 3.483 69.608 -61.013 1.00140.68 P
ATOM 23 OP1 U A 53 2.919 70.157 -62.282 1.00110.24 O
ATOM 24 OP2 U A 53 3.027 70.148 -59.696 1.00 99.18 O
ATOM 25 O5' U A 53 3.204 68.043 -60.977 1.00112.12 O
TER
ATOM 1 O3' G B 55 4.494 60.136 -54.240 1.00133.15 O
ATOM 2 P A B 56 5.674 61.131 -53.785 1.00133.80 P
ATOM 3 OP1 A B 56 5.655 61.166 -52.298 1.00100.69 O
ATOM 4 OP2 A B 56 5.593 62.404 -54.560 1.00101.43 O
ATOM 5 O5' A B 56 6.999 60.386 -54.260 1.00146.98 O
ATOM 6 C5' A B 56 7.570 59.319 -53.502 1.00145.53 C
ATOM 7 C4' A B 56 9.057 59.535 -53.377 1.00139.15 C
ATOM 8 O4' A B 56 9.531 59.887 -54.699 1.00122.37 O
ATOM 9 C3' A B 56 9.456 60.703 -52.476 1.00141.11 C
ATOM 10 O3' A B 56 9.576 60.328 -51.078 1.00141.36 O
ATOM 11 C2' A B 56 10.687 61.312 -53.146 1.00132.39 C
ATOM 12 O2' A B 56 11.914 60.808 -52.681 1.00166.87 O
ATOM 13 C1' A B 56 10.507 60.896 -54.607 1.00123.51 C
ATOM 14 N9 A B 56 10.204 61.934 -55.586 1.00114.36 N
ATOM 15 C8 A B 56 9.332 62.995 -55.530 1.00111.82 C
ATOM 16 N7 A B 56 9.332 63.734 -56.619 1.00112.82 N
ATOM 17 C5 A B 56 10.268 63.115 -57.449 1.00117.44 C
ATOM 18 C6 A B 56 10.745 63.403 -58.770 1.00113.51 C
ATOM 19 N6 A B 56 10.310 64.423 -59.523 1.00107.19 N
ATOM 20 N1 A B 56 11.694 62.581 -59.291 1.00 94.80 N
ATOM 21 C2 A B 56 12.115 61.538 -58.553 1.00 99.43 C
ATOM 22 N3 A B 56 11.739 61.160 -57.326 1.00101.22 N
ATOM 23 C4 A B 56 10.809 62.003 -56.823 1.00120.19 C
ATOM 24 P A B 57 10.640 59.191 -50.591 1.00136.30 P
ATOM 25 OP1 A B 57 10.655 58.096 -51.606 1.00120.05 O
ATOM 26 OP2 A B 57 10.318 58.859 -49.174 1.00112.93 O
ATOM 27 O5' A B 57 12.068 59.913 -50.628 1.00140.54 O
TER
Atoms:
C4: (7.072,66.646,-55.398)
N3: (7.771,66.080,-56.464)
OP1: (3.908,73.480,-58.022)
OP2: (3.878,71.733,-56.122)
C2: (8.064,66.670,-57.679)
C1': (7.912,68.642,-59.107)
C3': (5.924,69.497,-60.038)
O5': (5.364,71.433,-58.105)
O4': (7.884,70.054,-58.909)
C5': (6.262,71.854,-59.127)
P: (4.618,72.488,-57.175)
C4': (6.885,70.648,-59.786)
C2': (6.883,68.320,-60.194)
O2': (7.514,68.241,-61.462)
N1: (7.608,67.971,-57.830)
O4: (6.880,65.977,-54.361)
O2: (8.679,66.087,-58.559)
C6: (6.898,68.599,-56.813)
C5: (6.621,67.998,-55.636)
O3': (5.089,69.723,-61.169)
N3: (7.771,66.080,-56.464)
OP1: (3.908,73.480,-58.022)
OP2: (3.878,71.733,-56.122)
C2: (8.064,66.670,-57.679)
C1': (7.912,68.642,-59.107)
C3': (5.924,69.497,-60.038)
O5': (5.364,71.433,-58.105)
O4': (7.884,70.054,-58.909)
C5': (6.262,71.854,-59.127)
P: (4.618,72.488,-57.175)
C4': (6.885,70.648,-59.786)
C2': (6.883,68.320,-60.194)
O2': (7.514,68.241,-61.462)
N1: (7.608,67.971,-57.830)
O4: (6.880,65.977,-54.361)
O2: (8.679,66.087,-58.559)
C6: (6.898,68.599,-56.813)
C5: (6.621,67.998,-55.636)
O3': (5.089,69.723,-61.169)
OP1: (5.655,61.166,-52.298)
OP2: (5.593,62.404,-54.560)
C3': (9.456,60.703,-52.476)
C1': (10.507,60.896,-54.607)
C5': (7.570,59.319,-53.502)
O4': (9.531,59.887,-54.699)
C8: (9.332,62.995,-55.530)
O2': (11.914,60.808,-52.681)
C6: (10.745,63.403,-58.770)
C5: (10.268,63.115,-57.449)
C4: (10.809,62.003,-56.823)
P: (5.674,61.131,-53.785)
C4': (9.057,59.535,-53.377)
C2': (10.687,61.312,-53.146)
C2: (12.115,61.538,-58.553)
N1: (11.694,62.581,-59.291)
N3: (11.739,61.160,-57.326)
N6: (10.310,64.423,-59.523)
N7: (9.332,63.734,-56.619)
N9: (10.204,61.934,-55.586)
O5': (6.999,60.386,-54.260)
O3': (9.576,60.328,-51.078)
OP2: (5.593,62.404,-54.560)
C3': (9.456,60.703,-52.476)
C1': (10.507,60.896,-54.607)
C5': (7.570,59.319,-53.502)
O4': (9.531,59.887,-54.699)
C8: (9.332,62.995,-55.530)
O2': (11.914,60.808,-52.681)
C6: (10.745,63.403,-58.770)
C5: (10.268,63.115,-57.449)
C4: (10.809,62.003,-56.823)
P: (5.674,61.131,-53.785)
C4': (9.057,59.535,-53.377)
C2': (10.687,61.312,-53.146)
C2: (12.115,61.538,-58.553)
N1: (11.694,62.581,-59.291)
N3: (11.739,61.160,-57.326)
N6: (10.310,64.423,-59.523)
N7: (9.332,63.734,-56.619)
N9: (10.204,61.934,-55.586)
O5': (6.999,60.386,-54.260)
O3': (9.576,60.328,-51.078)
Image (generated by PyMOL):