ClaRNA

Doublet info:

Details

Nucleotide types: AU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3P22:F6:E9

Extra

PDB:
ATOM 1 O3' A A 5 9.249 -4.289 10.484 1.00 60.92 O
ATOM 2 P A A 6 8.191 -5.180 11.290 1.00 62.36 P
ATOM 3 OP1 A A 6 7.359 -4.234 12.064 1.00 64.69 O
ATOM 4 OP2 A A 6 8.934 -6.269 11.964 1.00 60.32 O
ATOM 5 O5' A A 6 7.286 -5.834 10.158 1.00 61.27 O
ATOM 6 C5' A A 6 6.210 -6.648 10.517 1.00 63.88 C
ATOM 7 C4' A A 6 5.530 -7.178 9.273 1.00 65.44 C
ATOM 8 O4' A A 6 6.480 -7.313 8.184 1.00 65.13 O
ATOM 9 C3' A A 6 4.943 -8.565 9.430 1.00 65.87 C
ATOM 10 O3' A A 6 3.652 -8.423 9.980 1.00 69.90 O
ATOM 11 C2' A A 6 4.875 -9.024 7.984 1.00 65.04 C
ATOM 12 O2' A A 6 3.801 -8.415 7.305 1.00 67.42 O
ATOM 13 C1' A A 6 6.175 -8.473 7.412 1.00 63.77 C
ATOM 14 N9 A A 6 7.321 -9.417 7.380 1.00 61.14 N
ATOM 15 C8 A A 6 8.533 -9.257 7.998 1.00 58.79 C
ATOM 16 N7 A A 6 9.369 -10.246 7.797 1.00 57.25 N
ATOM 17 C5 A A 6 8.670 -11.119 6.980 1.00 57.41 C
ATOM 18 C6 A A 6 9.016 -12.360 6.404 1.00 56.61 C
ATOM 19 N6 A A 6 10.207 -12.942 6.589 1.00 54.95 N
ATOM 20 N1 A A 6 8.100 -12.981 5.634 1.00 57.35 N
ATOM 21 C2 A A 6 6.917 -12.388 5.448 1.00 60.03 C
ATOM 22 N3 A A 6 6.473 -11.226 5.941 1.00 61.25 N
ATOM 23 C4 A A 6 7.410 -10.628 6.704 1.00 59.74 C
ATOM 24 P A A 7 3.025 -9.571 10.892 1.00 71.19 P
ATOM 25 OP1 A A 7 1.603 -9.221 11.132 1.00 72.71 O
ATOM 26 OP2 A A 7 3.944 -9.795 12.034 1.00 70.00 O
ATOM 27 O5' A A 7 3.127 -10.860 9.939 1.00 68.43 O
TER

ATOM 1 O3' U B 8 18.328 -8.410 12.616 1.00 53.17 O
ATOM 2 P U B 9 17.588 -9.469 13.568 1.00 55.61 P
ATOM 3 OP1 U B 9 18.094 -9.227 14.945 1.00 57.04 O
ATOM 4 OP2 U B 9 17.623 -10.813 12.935 1.00 53.03 O
ATOM 5 O5' U B 9 16.073 -9.003 13.500 1.00 55.25 O
ATOM 6 C5' U B 9 15.760 -7.707 13.913 1.00 57.36 C
ATOM 7 C4' U B 9 14.427 -7.331 13.319 1.00 58.58 C
ATOM 8 O4' U B 9 14.448 -7.516 11.889 1.00 57.18 O
ATOM 9 C3' U B 9 13.241 -8.196 13.728 1.00 59.09 C
ATOM 10 O3' U B 9 12.815 -7.910 15.068 1.00 61.37 O
ATOM 11 C2' U B 9 12.233 -7.737 12.691 1.00 57.74 C
ATOM 12 O2' U B 9 11.716 -6.453 13.005 1.00 59.85 O
ATOM 13 C1' U B 9 13.111 -7.673 11.444 1.00 56.00 C
ATOM 14 N1 U B 9 13.016 -8.894 10.580 1.00 53.74 N
ATOM 15 C2 U B 9 11.914 -9.040 9.758 1.00 54.00 C
ATOM 16 O2 U B 9 11.015 -8.227 9.688 1.00 56.60 O
ATOM 17 N3 U B 9 11.893 -10.172 8.994 1.00 52.84 N
ATOM 18 C4 U B 9 12.847 -11.164 8.981 1.00 52.52 C
ATOM 19 O4 U B 9 12.686 -12.124 8.230 1.00 52.84 O
ATOM 20 C5 U B 9 13.976 -10.952 9.866 1.00 51.38 C
ATOM 21 C6 U B 9 14.024 -9.840 10.606 1.00 52.44 C
ATOM 22 P U B 10 12.659 -9.116 16.106 1.00 63.08 P
ATOM 23 OP1 U B 10 12.849 -8.540 17.461 1.00 66.06 O
ATOM 24 OP2 U B 10 13.472 -10.272 15.697 1.00 59.83 O
ATOM 25 O5' U B 10 11.132 -9.534 15.888 1.00 63.09 O
TER

Atoms:
OP1: (7.359,-4.234,12.064)
OP2: (8.934,-6.269,11.964)
C3': (4.943,-8.565,9.430)
C1': (6.175,-8.473,7.412)
C5': (6.210,-6.648,10.517)
O4': (6.480,-7.313,8.184)
C8: (8.533,-9.257,7.998)
O2': (3.801,-8.415,7.305)
C6: (9.016,-12.360,6.404)
C5: (8.670,-11.119,6.980)
C4: (7.410,-10.628,6.704)
P: (8.191,-5.180,11.290)
C4': (5.530,-7.178,9.273)
C2': (4.875,-9.024,7.984)
C2: (6.917,-12.388,5.448)
N1: (8.100,-12.981,5.634)
N3: (6.473,-11.226,5.941)
N6: (10.207,-12.942,6.589)
N7: (9.369,-10.246,7.797)
N9: (7.321,-9.417,7.380)
O5': (7.286,-5.834,10.158)
O3': (3.652,-8.423,9.980)
C4: (12.847,-11.164,8.981)
N3: (11.893,-10.172,8.994)
OP1: (18.094,-9.227,14.945)
OP2: (17.623,-10.813,12.935)
C2: (11.914,-9.040,9.758)
C1': (13.111,-7.673,11.444)
C3': (13.241,-8.196,13.728)
O5': (16.073,-9.003,13.500)
O4': (14.448,-7.516,11.889)
C5': (15.760,-7.707,13.913)
P: (17.588,-9.469,13.568)
C4': (14.427,-7.331,13.319)
C2': (12.233,-7.737,12.691)
O2': (11.716,-6.453,13.005)
N1: (13.016,-8.894,10.580)
O4: (12.686,-12.124,8.230)
O2: (11.015,-8.227,9.688)
C6: (14.024,-9.840,10.606)
C5: (13.976,-10.952,9.866)
O3': (12.815,-7.910,15.068)
Image (generated by PyMOL):
PyMOL image
show in jmol