Doublet info:
Details
Nucleotide types:
UA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1RNA:A5:A4
Extra
PDB:
ATOM 1 O3' A A 4 9.817 8.405 3.339 1.00 18.15 O
ATOM 2 P U A 5 10.158 9.828 2.573 1.00 14.24 P
ATOM 3 OP1 U A 5 10.247 9.252 1.193 1.00 20.60 O
ATOM 4 OP2 U A 5 11.447 10.381 3.163 1.00 7.32 O
ATOM 5 O5' U A 5 8.814 10.590 2.912 1.00 10.58 O
ATOM 6 C5' U A 5 7.647 9.948 2.338 1.00 6.13 C
ATOM 7 C4' U A 5 6.433 10.764 2.711 1.00 6.66 C
ATOM 8 O4' U A 5 6.314 10.720 4.111 1.00 9.50 O
ATOM 9 C3' U A 5 6.477 12.250 2.397 1.00 11.43 C
ATOM 10 O3' U A 5 6.194 12.634 1.051 1.00 17.03 O
ATOM 11 C2' U A 5 5.461 12.799 3.394 1.00 10.37 C
ATOM 12 O2' U A 5 4.178 12.455 2.883 1.00 12.27 O
ATOM 13 C1' U A 5 5.730 11.942 4.611 1.00 5.76 C
ATOM 14 N1 U A 5 6.696 12.607 5.505 1.00 3.44 N
ATOM 15 C2 U A 5 6.239 13.495 6.458 1.00 4.19 C
ATOM 16 O2 U A 5 5.065 13.793 6.625 1.00 11.90 O
ATOM 17 N3 U A 5 7.170 14.061 7.278 1.00 6.64 N
ATOM 18 C4 U A 5 8.507 13.820 7.150 1.00 11.12 C
ATOM 19 O4 U A 5 9.230 14.440 7.985 1.00 9.54 O
ATOM 20 C5 U A 5 8.964 12.919 6.149 1.00 3.72 C
ATOM 21 C6 U A 5 8.026 12.344 5.382 1.00 6.86 C
ATOM 22 P A A 6 6.866 14.003 0.471 1.00 20.60 P
ATOM 23 OP1 A A 6 6.379 14.378 -0.899 1.00 22.46 O
ATOM 24 OP2 A A 6 8.302 13.767 0.643 1.00 21.33 O
ATOM 25 O5' A A 6 6.024 14.962 1.478 1.00 23.19 O
TER
ATOM 1 O3' U B 3 14.381 7.231 7.710 1.00 11.09 O
ATOM 2 P A B 4 14.026 8.320 6.654 1.00 8.18 P
ATOM 3 OP1 A B 4 15.025 8.106 5.594 1.00 10.00 O
ATOM 4 OP2 A B 4 14.275 9.582 7.425 1.00 11.16 O
ATOM 5 O5' A B 4 12.590 8.146 6.178 1.00 13.16 O
ATOM 6 C5' A B 4 11.973 7.124 5.343 1.00 14.44 C
ATOM 7 C4' A B 4 10.472 7.271 5.432 1.00 12.02 C
ATOM 8 O4' A B 4 10.086 7.410 6.777 1.00 13.65 O
ATOM 9 C3' A B 4 9.878 8.498 4.769 1.00 13.59 C
ATOM 10 O3' A B 4 9.817 8.405 3.339 1.00 18.15 O
ATOM 11 C2' A B 4 8.531 8.641 5.466 1.00 11.90 C
ATOM 12 O2' A B 4 7.661 7.651 4.945 1.00 15.10 O
ATOM 13 C1' A B 4 8.910 8.235 6.875 1.00 8.89 C
ATOM 14 N9 A B 4 9.165 9.373 7.784 1.00 3.67 N
ATOM 15 C8 A B 4 10.329 9.872 8.309 1.00 2.00 C
ATOM 16 N7 A B 4 10.151 10.871 9.134 1.00 2.58 N
ATOM 17 C5 A B 4 8.766 11.032 9.159 1.00 2.00 C
ATOM 18 C6 A B 4 7.934 11.960 9.832 1.00 4.93 C
ATOM 19 N6 A B 4 8.435 12.883 10.647 1.00 5.39 N
ATOM 20 N1 A B 4 6.593 11.822 9.562 1.00 6.86 N
ATOM 21 C2 A B 4 6.119 10.876 8.702 1.00 7.98 C
ATOM 22 N3 A B 4 6.842 9.984 8.034 1.00 2.26 N
ATOM 23 C4 A B 4 8.149 10.126 8.324 1.00 2.00 C
ATOM 24 P U B 5 10.158 9.828 2.573 1.00 14.24 P
ATOM 25 OP1 U B 5 10.247 9.252 1.193 1.00 20.60 O
ATOM 26 OP2 U B 5 11.447 10.381 3.163 1.00 7.32 O
ATOM 27 O5' U B 5 8.814 10.590 2.912 1.00 10.58 O
TER
ATOM 2 P U A 5 10.158 9.828 2.573 1.00 14.24 P
ATOM 3 OP1 U A 5 10.247 9.252 1.193 1.00 20.60 O
ATOM 4 OP2 U A 5 11.447 10.381 3.163 1.00 7.32 O
ATOM 5 O5' U A 5 8.814 10.590 2.912 1.00 10.58 O
ATOM 6 C5' U A 5 7.647 9.948 2.338 1.00 6.13 C
ATOM 7 C4' U A 5 6.433 10.764 2.711 1.00 6.66 C
ATOM 8 O4' U A 5 6.314 10.720 4.111 1.00 9.50 O
ATOM 9 C3' U A 5 6.477 12.250 2.397 1.00 11.43 C
ATOM 10 O3' U A 5 6.194 12.634 1.051 1.00 17.03 O
ATOM 11 C2' U A 5 5.461 12.799 3.394 1.00 10.37 C
ATOM 12 O2' U A 5 4.178 12.455 2.883 1.00 12.27 O
ATOM 13 C1' U A 5 5.730 11.942 4.611 1.00 5.76 C
ATOM 14 N1 U A 5 6.696 12.607 5.505 1.00 3.44 N
ATOM 15 C2 U A 5 6.239 13.495 6.458 1.00 4.19 C
ATOM 16 O2 U A 5 5.065 13.793 6.625 1.00 11.90 O
ATOM 17 N3 U A 5 7.170 14.061 7.278 1.00 6.64 N
ATOM 18 C4 U A 5 8.507 13.820 7.150 1.00 11.12 C
ATOM 19 O4 U A 5 9.230 14.440 7.985 1.00 9.54 O
ATOM 20 C5 U A 5 8.964 12.919 6.149 1.00 3.72 C
ATOM 21 C6 U A 5 8.026 12.344 5.382 1.00 6.86 C
ATOM 22 P A A 6 6.866 14.003 0.471 1.00 20.60 P
ATOM 23 OP1 A A 6 6.379 14.378 -0.899 1.00 22.46 O
ATOM 24 OP2 A A 6 8.302 13.767 0.643 1.00 21.33 O
ATOM 25 O5' A A 6 6.024 14.962 1.478 1.00 23.19 O
TER
ATOM 1 O3' U B 3 14.381 7.231 7.710 1.00 11.09 O
ATOM 2 P A B 4 14.026 8.320 6.654 1.00 8.18 P
ATOM 3 OP1 A B 4 15.025 8.106 5.594 1.00 10.00 O
ATOM 4 OP2 A B 4 14.275 9.582 7.425 1.00 11.16 O
ATOM 5 O5' A B 4 12.590 8.146 6.178 1.00 13.16 O
ATOM 6 C5' A B 4 11.973 7.124 5.343 1.00 14.44 C
ATOM 7 C4' A B 4 10.472 7.271 5.432 1.00 12.02 C
ATOM 8 O4' A B 4 10.086 7.410 6.777 1.00 13.65 O
ATOM 9 C3' A B 4 9.878 8.498 4.769 1.00 13.59 C
ATOM 10 O3' A B 4 9.817 8.405 3.339 1.00 18.15 O
ATOM 11 C2' A B 4 8.531 8.641 5.466 1.00 11.90 C
ATOM 12 O2' A B 4 7.661 7.651 4.945 1.00 15.10 O
ATOM 13 C1' A B 4 8.910 8.235 6.875 1.00 8.89 C
ATOM 14 N9 A B 4 9.165 9.373 7.784 1.00 3.67 N
ATOM 15 C8 A B 4 10.329 9.872 8.309 1.00 2.00 C
ATOM 16 N7 A B 4 10.151 10.871 9.134 1.00 2.58 N
ATOM 17 C5 A B 4 8.766 11.032 9.159 1.00 2.00 C
ATOM 18 C6 A B 4 7.934 11.960 9.832 1.00 4.93 C
ATOM 19 N6 A B 4 8.435 12.883 10.647 1.00 5.39 N
ATOM 20 N1 A B 4 6.593 11.822 9.562 1.00 6.86 N
ATOM 21 C2 A B 4 6.119 10.876 8.702 1.00 7.98 C
ATOM 22 N3 A B 4 6.842 9.984 8.034 1.00 2.26 N
ATOM 23 C4 A B 4 8.149 10.126 8.324 1.00 2.00 C
ATOM 24 P U B 5 10.158 9.828 2.573 1.00 14.24 P
ATOM 25 OP1 U B 5 10.247 9.252 1.193 1.00 20.60 O
ATOM 26 OP2 U B 5 11.447 10.381 3.163 1.00 7.32 O
ATOM 27 O5' U B 5 8.814 10.590 2.912 1.00 10.58 O
TER
Atoms:
C4: (8.507,13.820,7.150)
N3: (7.170,14.061,7.278)
OP1: (10.247,9.252,1.193)
OP2: (11.447,10.381,3.163)
C2: (6.239,13.495,6.458)
C1': (5.730,11.942,4.611)
C3': (6.477,12.250,2.397)
O5': (8.814,10.590,2.912)
O4': (6.314,10.720,4.111)
C5': (7.647,9.948,2.338)
P: (10.158,9.828,2.573)
C4': (6.433,10.764,2.711)
C2': (5.461,12.799,3.394)
O2': (4.178,12.455,2.883)
N1: (6.696,12.607,5.505)
O4: (9.230,14.440,7.985)
O2: (5.065,13.793,6.625)
C6: (8.026,12.344,5.382)
C5: (8.964,12.919,6.149)
O3': (6.194,12.634,1.051)
N3: (7.170,14.061,7.278)
OP1: (10.247,9.252,1.193)
OP2: (11.447,10.381,3.163)
C2: (6.239,13.495,6.458)
C1': (5.730,11.942,4.611)
C3': (6.477,12.250,2.397)
O5': (8.814,10.590,2.912)
O4': (6.314,10.720,4.111)
C5': (7.647,9.948,2.338)
P: (10.158,9.828,2.573)
C4': (6.433,10.764,2.711)
C2': (5.461,12.799,3.394)
O2': (4.178,12.455,2.883)
N1: (6.696,12.607,5.505)
O4: (9.230,14.440,7.985)
O2: (5.065,13.793,6.625)
C6: (8.026,12.344,5.382)
C5: (8.964,12.919,6.149)
O3': (6.194,12.634,1.051)
OP1: (15.025,8.106,5.594)
OP2: (14.275,9.582,7.425)
C3': (9.878,8.498,4.769)
C1': (8.910,8.235,6.875)
C5': (11.973,7.124,5.343)
O4': (10.086,7.410,6.777)
C8: (10.329,9.872,8.309)
O2': (7.661,7.651,4.945)
C6: (7.934,11.960,9.832)
C5: (8.766,11.032,9.159)
C4: (8.149,10.126,8.324)
P: (14.026,8.320,6.654)
C4': (10.472,7.271,5.432)
C2': (8.531,8.641,5.466)
C2: (6.119,10.876,8.702)
N1: (6.593,11.822,9.562)
N3: (6.842,9.984,8.034)
N6: (8.435,12.883,10.647)
N7: (10.151,10.871,9.134)
N9: (9.165,9.373,7.784)
O5': (12.590,8.146,6.178)
O3': (9.817,8.405,3.339)
OP2: (14.275,9.582,7.425)
C3': (9.878,8.498,4.769)
C1': (8.910,8.235,6.875)
C5': (11.973,7.124,5.343)
O4': (10.086,7.410,6.777)
C8: (10.329,9.872,8.309)
O2': (7.661,7.651,4.945)
C6: (7.934,11.960,9.832)
C5: (8.766,11.032,9.159)
C4: (8.149,10.126,8.324)
P: (14.026,8.320,6.654)
C4': (10.472,7.271,5.432)
C2': (8.531,8.641,5.466)
C2: (6.119,10.876,8.702)
N1: (6.593,11.822,9.562)
N3: (6.842,9.984,8.034)
N6: (8.435,12.883,10.647)
N7: (10.151,10.871,9.134)
N9: (9.165,9.373,7.784)
O5': (12.590,8.146,6.178)
O3': (9.817,8.405,3.339)
Image (generated by PyMOL):