Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12454:12456
Extra
PDB:
ATOM 1 O3' U A2453 21.103 -65.335 35.926 1.00 46.35 O
ATOM 2 P A A2454 20.447 -65.703 34.514 1.00 51.71 P
ATOM 3 OP1 A A2454 21.375 -66.684 33.868 1.00 52.12 O
ATOM 4 OP2 A A2454 20.134 -64.406 33.816 1.00 51.44 O
ATOM 5 O5' A A2454 19.077 -66.431 34.924 1.00 52.03 O
ATOM 6 C5' A A2454 19.061 -67.681 35.608 1.00 52.33 C
ATOM 7 C4' A A2454 17.974 -68.593 35.088 1.00 52.91 C
ATOM 8 O4' A A2454 16.651 -67.973 35.304 1.00 52.79 O
ATOM 9 C3' A A2454 18.051 -68.879 33.603 1.00 53.36 C
ATOM 10 O3' A A2454 17.422 -70.123 33.344 1.00 53.98 O
ATOM 11 C2' A A2454 17.196 -67.766 33.037 1.00 53.18 C
ATOM 12 O2' A A2454 16.752 -67.987 31.734 1.00 53.64 O
ATOM 13 C1' A A2454 16.041 -67.737 34.047 1.00 53.07 C
ATOM 14 N9 A A2454 15.325 -66.455 34.121 1.00 52.67 N
ATOM 15 C8 A A2454 15.884 -65.229 34.234 1.00 52.13 C
ATOM 16 N7 A A2454 15.053 -64.223 34.314 1.00 51.86 N
ATOM 17 C5 A A2454 13.827 -64.817 34.241 1.00 52.25 C
ATOM 18 C6 A A2454 12.524 -64.276 34.276 1.00 52.23 C
ATOM 19 N6 A A2454 12.185 -62.968 34.388 1.00 51.80 N
ATOM 20 N1 A A2454 11.531 -65.163 34.153 1.00 52.71 N
ATOM 21 C2 A A2454 11.822 -66.451 34.037 1.00 53.16 C
ATOM 22 N3 A A2454 12.985 -67.057 34.013 1.00 53.22 N
ATOM 23 C4 A A2454 13.980 -66.185 34.124 1.00 52.75 C
ATOM 24 P A A2455 18.287 -71.490 33.302 1.00 51.23 P
ATOM 25 OP1 A A2455 19.728 -71.104 33.250 1.00 50.93 O
ATOM 26 OP2 A A2455 17.736 -72.338 32.192 1.00 51.90 O
ATOM 27 O5' A A2455 17.938 -72.149 34.695 1.00 51.20 O
TER
ATOM 1 O3' A B2455 16.924 -74.058 37.682 1.00 51.41 O
ATOM 2 P A B2456 18.148 -73.949 38.696 1.00 55.58 P
ATOM 3 OP1 A B2456 18.844 -75.248 38.688 1.00 56.05 O
ATOM 4 OP2 A B2456 17.601 -73.434 39.975 1.00 55.17 O
ATOM 5 O5' A B2456 19.091 -72.884 38.038 1.00 55.19 O
ATOM 6 C5' A B2456 18.658 -71.575 37.805 1.00 54.76 C
ATOM 7 C4' A B2456 19.448 -70.572 38.573 1.00 54.12 C
ATOM 8 O4' A B2456 18.952 -69.288 38.148 1.00 53.77 O
ATOM 9 C3' A B2456 19.210 -70.615 40.082 1.00 53.86 C
ATOM 10 O3' A B2456 20.240 -69.878 40.772 1.00 53.33 O
ATOM 11 C2' A B2456 17.886 -69.876 40.157 1.00 53.70 C
ATOM 12 O2' A B2456 17.526 -69.388 41.421 1.00 53.30 O
ATOM 13 C1' A B2456 18.095 -68.757 39.137 1.00 53.45 C
ATOM 14 N9 A B2456 16.844 -68.349 38.511 1.00 53.57 N
ATOM 15 C8 A B2456 15.887 -69.193 38.046 1.00 54.10 C
ATOM 16 N7 A B2456 14.797 -68.586 37.637 1.00 54.10 N
ATOM 17 C5 A B2456 15.018 -67.252 37.887 1.00 53.52 C
ATOM 18 C6 A B2456 14.230 -66.102 37.694 1.00 53.24 C
ATOM 19 N6 A B2456 13.000 -66.009 37.169 1.00 53.49 N
ATOM 20 N1 A B2456 14.796 -64.958 38.061 1.00 52.68 N
ATOM 21 C2 A B2456 16.024 -64.973 38.577 1.00 52.43 C
ATOM 22 N3 A B2456 16.846 -65.975 38.827 1.00 52.64 N
ATOM 23 C4 A B2456 16.275 -67.106 38.442 1.00 53.19 C
ATOM 24 P A B2457 20.337 -69.830 42.400 1.00 48.28 P
ATOM 25 OP1 A B2457 21.768 -69.769 42.741 1.00 48.06 O
ATOM 26 OP2 A B2457 19.565 -70.921 42.940 1.00 48.68 O
ATOM 27 O5' A B2457 19.646 -68.445 42.779 1.00 47.76 O
TER
ATOM 2 P A A2454 20.447 -65.703 34.514 1.00 51.71 P
ATOM 3 OP1 A A2454 21.375 -66.684 33.868 1.00 52.12 O
ATOM 4 OP2 A A2454 20.134 -64.406 33.816 1.00 51.44 O
ATOM 5 O5' A A2454 19.077 -66.431 34.924 1.00 52.03 O
ATOM 6 C5' A A2454 19.061 -67.681 35.608 1.00 52.33 C
ATOM 7 C4' A A2454 17.974 -68.593 35.088 1.00 52.91 C
ATOM 8 O4' A A2454 16.651 -67.973 35.304 1.00 52.79 O
ATOM 9 C3' A A2454 18.051 -68.879 33.603 1.00 53.36 C
ATOM 10 O3' A A2454 17.422 -70.123 33.344 1.00 53.98 O
ATOM 11 C2' A A2454 17.196 -67.766 33.037 1.00 53.18 C
ATOM 12 O2' A A2454 16.752 -67.987 31.734 1.00 53.64 O
ATOM 13 C1' A A2454 16.041 -67.737 34.047 1.00 53.07 C
ATOM 14 N9 A A2454 15.325 -66.455 34.121 1.00 52.67 N
ATOM 15 C8 A A2454 15.884 -65.229 34.234 1.00 52.13 C
ATOM 16 N7 A A2454 15.053 -64.223 34.314 1.00 51.86 N
ATOM 17 C5 A A2454 13.827 -64.817 34.241 1.00 52.25 C
ATOM 18 C6 A A2454 12.524 -64.276 34.276 1.00 52.23 C
ATOM 19 N6 A A2454 12.185 -62.968 34.388 1.00 51.80 N
ATOM 20 N1 A A2454 11.531 -65.163 34.153 1.00 52.71 N
ATOM 21 C2 A A2454 11.822 -66.451 34.037 1.00 53.16 C
ATOM 22 N3 A A2454 12.985 -67.057 34.013 1.00 53.22 N
ATOM 23 C4 A A2454 13.980 -66.185 34.124 1.00 52.75 C
ATOM 24 P A A2455 18.287 -71.490 33.302 1.00 51.23 P
ATOM 25 OP1 A A2455 19.728 -71.104 33.250 1.00 50.93 O
ATOM 26 OP2 A A2455 17.736 -72.338 32.192 1.00 51.90 O
ATOM 27 O5' A A2455 17.938 -72.149 34.695 1.00 51.20 O
TER
ATOM 1 O3' A B2455 16.924 -74.058 37.682 1.00 51.41 O
ATOM 2 P A B2456 18.148 -73.949 38.696 1.00 55.58 P
ATOM 3 OP1 A B2456 18.844 -75.248 38.688 1.00 56.05 O
ATOM 4 OP2 A B2456 17.601 -73.434 39.975 1.00 55.17 O
ATOM 5 O5' A B2456 19.091 -72.884 38.038 1.00 55.19 O
ATOM 6 C5' A B2456 18.658 -71.575 37.805 1.00 54.76 C
ATOM 7 C4' A B2456 19.448 -70.572 38.573 1.00 54.12 C
ATOM 8 O4' A B2456 18.952 -69.288 38.148 1.00 53.77 O
ATOM 9 C3' A B2456 19.210 -70.615 40.082 1.00 53.86 C
ATOM 10 O3' A B2456 20.240 -69.878 40.772 1.00 53.33 O
ATOM 11 C2' A B2456 17.886 -69.876 40.157 1.00 53.70 C
ATOM 12 O2' A B2456 17.526 -69.388 41.421 1.00 53.30 O
ATOM 13 C1' A B2456 18.095 -68.757 39.137 1.00 53.45 C
ATOM 14 N9 A B2456 16.844 -68.349 38.511 1.00 53.57 N
ATOM 15 C8 A B2456 15.887 -69.193 38.046 1.00 54.10 C
ATOM 16 N7 A B2456 14.797 -68.586 37.637 1.00 54.10 N
ATOM 17 C5 A B2456 15.018 -67.252 37.887 1.00 53.52 C
ATOM 18 C6 A B2456 14.230 -66.102 37.694 1.00 53.24 C
ATOM 19 N6 A B2456 13.000 -66.009 37.169 1.00 53.49 N
ATOM 20 N1 A B2456 14.796 -64.958 38.061 1.00 52.68 N
ATOM 21 C2 A B2456 16.024 -64.973 38.577 1.00 52.43 C
ATOM 22 N3 A B2456 16.846 -65.975 38.827 1.00 52.64 N
ATOM 23 C4 A B2456 16.275 -67.106 38.442 1.00 53.19 C
ATOM 24 P A B2457 20.337 -69.830 42.400 1.00 48.28 P
ATOM 25 OP1 A B2457 21.768 -69.769 42.741 1.00 48.06 O
ATOM 26 OP2 A B2457 19.565 -70.921 42.940 1.00 48.68 O
ATOM 27 O5' A B2457 19.646 -68.445 42.779 1.00 47.76 O
TER
Atoms:
OP1: (21.375,-66.684,33.868)
OP2: (20.134,-64.406,33.816)
C3': (18.051,-68.879,33.603)
C1': (16.041,-67.737,34.047)
C5': (19.061,-67.681,35.608)
O4': (16.651,-67.973,35.304)
C8: (15.884,-65.229,34.234)
O2': (16.752,-67.987,31.734)
C6: (12.524,-64.276,34.276)
C5: (13.827,-64.817,34.241)
C4: (13.980,-66.185,34.124)
P: (20.447,-65.703,34.514)
C4': (17.974,-68.593,35.088)
C2': (17.196,-67.766,33.037)
C2: (11.822,-66.451,34.037)
N1: (11.531,-65.163,34.153)
N3: (12.985,-67.057,34.013)
N6: (12.185,-62.968,34.388)
N7: (15.053,-64.223,34.314)
N9: (15.325,-66.455,34.121)
O5': (19.077,-66.431,34.924)
O3': (17.422,-70.123,33.344)
OP2: (20.134,-64.406,33.816)
C3': (18.051,-68.879,33.603)
C1': (16.041,-67.737,34.047)
C5': (19.061,-67.681,35.608)
O4': (16.651,-67.973,35.304)
C8: (15.884,-65.229,34.234)
O2': (16.752,-67.987,31.734)
C6: (12.524,-64.276,34.276)
C5: (13.827,-64.817,34.241)
C4: (13.980,-66.185,34.124)
P: (20.447,-65.703,34.514)
C4': (17.974,-68.593,35.088)
C2': (17.196,-67.766,33.037)
C2: (11.822,-66.451,34.037)
N1: (11.531,-65.163,34.153)
N3: (12.985,-67.057,34.013)
N6: (12.185,-62.968,34.388)
N7: (15.053,-64.223,34.314)
N9: (15.325,-66.455,34.121)
O5': (19.077,-66.431,34.924)
O3': (17.422,-70.123,33.344)
OP1: (18.844,-75.248,38.688)
OP2: (17.601,-73.434,39.975)
C3': (19.210,-70.615,40.082)
C1': (18.095,-68.757,39.137)
C5': (18.658,-71.575,37.805)
O4': (18.952,-69.288,38.148)
C8: (15.887,-69.193,38.046)
O2': (17.526,-69.388,41.421)
C6: (14.230,-66.102,37.694)
C5: (15.018,-67.252,37.887)
C4: (16.275,-67.106,38.442)
P: (18.148,-73.949,38.696)
C4': (19.448,-70.572,38.573)
C2': (17.886,-69.876,40.157)
C2: (16.024,-64.973,38.577)
N1: (14.796,-64.958,38.061)
N3: (16.846,-65.975,38.827)
N6: (13.000,-66.009,37.169)
N7: (14.797,-68.586,37.637)
N9: (16.844,-68.349,38.511)
O5': (19.091,-72.884,38.038)
O3': (20.240,-69.878,40.772)
OP2: (17.601,-73.434,39.975)
C3': (19.210,-70.615,40.082)
C1': (18.095,-68.757,39.137)
C5': (18.658,-71.575,37.805)
O4': (18.952,-69.288,38.148)
C8: (15.887,-69.193,38.046)
O2': (17.526,-69.388,41.421)
C6: (14.230,-66.102,37.694)
C5: (15.018,-67.252,37.887)
C4: (16.275,-67.106,38.442)
P: (18.148,-73.949,38.696)
C4': (19.448,-70.572,38.573)
C2': (17.886,-69.876,40.157)
C2: (16.024,-64.973,38.577)
N1: (14.796,-64.958,38.061)
N3: (16.846,-65.975,38.827)
N6: (13.000,-66.009,37.169)
N7: (14.797,-68.586,37.637)
N9: (16.844,-68.349,38.511)
O5': (19.091,-72.884,38.038)
O3': (20.240,-69.878,40.772)
Image (generated by PyMOL):