Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8T:A1904:A1911
Extra
PDB:
ATOM 1 O3' U A1903 -63.255 107.022 102.172 1.00 11.08 O
ATOM 2 P A A1904 -63.221 105.563 102.838 1.00 13.79 P
ATOM 3 OP1 A A1904 -64.413 104.821 102.339 1.00 13.79 O
ATOM 4 OP2 A A1904 -63.054 105.748 104.313 1.00 13.79 O
ATOM 5 O5' A A1904 -61.907 104.937 102.218 1.00 13.79 O
ATOM 6 C5' A A1904 -61.862 104.600 100.850 1.00 13.79 C
ATOM 7 C4' A A1904 -60.644 103.778 100.516 1.00 13.79 C
ATOM 8 O4' A A1904 -59.450 104.454 100.949 1.00 13.79 O
ATOM 9 C3' A A1904 -60.562 102.416 101.169 1.00 13.79 C
ATOM 10 O3' A A1904 -61.323 101.452 100.470 1.00 13.79 O
ATOM 11 C2' A A1904 -59.055 102.115 101.206 1.00 13.79 C
ATOM 12 O2' A A1904 -58.648 101.347 100.080 1.00 13.79 O
ATOM 13 C1' A A1904 -58.422 103.513 101.114 1.00 13.79 C
ATOM 14 N9 A A1904 -57.661 103.864 102.306 1.00 13.81 N
ATOM 15 C8 A A1904 -58.142 104.009 103.572 1.00 13.81 C
ATOM 16 N7 A A1904 -57.203 104.340 104.411 1.00 13.81 N
ATOM 17 C5 A A1904 -56.060 104.415 103.630 1.00 13.81 C
ATOM 18 C6 A A1904 -54.754 104.712 103.951 1.00 13.81 C
ATOM 19 N6 A A1904 -54.373 105.006 105.195 1.00 13.81 N
ATOM 20 N1 A A1904 -53.870 104.697 102.949 1.00 13.81 N
ATOM 21 C2 A A1904 -54.278 104.407 101.719 1.00 13.81 C
ATOM 22 N3 A A1904 -55.486 104.108 101.307 1.00 13.81 N
ATOM 23 C4 A A1904 -56.327 104.131 102.328 1.00 13.81 C
ATOM 24 P A A1905 -62.512 100.696 101.214 1.00 52.95 P
ATOM 25 OP1 A A1905 -63.758 101.046 100.505 1.00 52.95 O
ATOM 26 OP2 A A1905 -62.403 101.007 102.658 1.00 52.95 O
ATOM 27 O5' A A1905 -62.147 99.179 100.967 1.00 52.95 O
TER
ATOM 1 O3' A B1910 -52.817 109.622 106.080 1.00 15.03 O
ATOM 2 P A B1911 -51.570 110.612 106.246 1.00 18.21 P
ATOM 3 OP1 A B1911 -50.538 109.875 107.053 1.00 18.21 O
ATOM 4 OP2 A B1911 -52.104 111.911 106.763 1.00 18.21 O
ATOM 5 O5' A B1911 -51.075 110.793 104.733 1.00 18.21 O
ATOM 6 C5' A B1911 -49.698 110.910 104.410 1.00 18.21 C
ATOM 7 C4' A B1911 -49.386 110.225 103.107 1.00 18.21 C
ATOM 8 O4' A B1911 -49.758 108.824 103.200 1.00 18.21 O
ATOM 9 C3' A B1911 -50.158 110.720 101.894 1.00 18.21 C
ATOM 10 O3' A B1911 -49.597 111.864 101.307 1.00 18.21 O
ATOM 11 C2' A B1911 -50.149 109.508 100.991 1.00 18.21 C
ATOM 12 O2' A B1911 -48.856 109.307 100.440 1.00 18.21 O
ATOM 13 C1' A B1911 -50.415 108.422 102.014 1.00 18.21 C
ATOM 14 N9 A B1911 -51.847 108.317 102.324 1.00 18.07 N
ATOM 15 C8 A B1911 -52.370 108.370 103.592 1.00 18.07 C
ATOM 16 N7 A B1911 -53.670 108.295 103.642 1.00 18.07 N
ATOM 17 C5 A B1911 -54.022 108.193 102.315 1.00 18.07 C
ATOM 18 C6 A B1911 -55.269 108.072 101.717 1.00 18.07 C
ATOM 19 N6 A B1911 -56.395 108.041 102.426 1.00 18.07 N
ATOM 20 N1 A B1911 -55.311 108.003 100.373 1.00 18.07 N
ATOM 21 C2 A B1911 -54.162 108.043 99.694 1.00 18.07 C
ATOM 22 N3 A B1911 -52.918 108.155 100.151 1.00 18.07 N
ATOM 23 C4 A B1911 -52.919 108.222 101.487 1.00 18.07 C
ATOM 24 P C B1912 -50.378 113.246 101.400 1.00 13.85 P
ATOM 25 OP1 C B1912 -49.583 114.235 100.648 1.00 13.85 O
ATOM 26 OP2 C B1912 -50.665 113.492 102.828 1.00 13.85 O
ATOM 27 O5' C B1912 -51.732 112.941 100.633 1.00 13.85 O
TER
ATOM 2 P A A1904 -63.221 105.563 102.838 1.00 13.79 P
ATOM 3 OP1 A A1904 -64.413 104.821 102.339 1.00 13.79 O
ATOM 4 OP2 A A1904 -63.054 105.748 104.313 1.00 13.79 O
ATOM 5 O5' A A1904 -61.907 104.937 102.218 1.00 13.79 O
ATOM 6 C5' A A1904 -61.862 104.600 100.850 1.00 13.79 C
ATOM 7 C4' A A1904 -60.644 103.778 100.516 1.00 13.79 C
ATOM 8 O4' A A1904 -59.450 104.454 100.949 1.00 13.79 O
ATOM 9 C3' A A1904 -60.562 102.416 101.169 1.00 13.79 C
ATOM 10 O3' A A1904 -61.323 101.452 100.470 1.00 13.79 O
ATOM 11 C2' A A1904 -59.055 102.115 101.206 1.00 13.79 C
ATOM 12 O2' A A1904 -58.648 101.347 100.080 1.00 13.79 O
ATOM 13 C1' A A1904 -58.422 103.513 101.114 1.00 13.79 C
ATOM 14 N9 A A1904 -57.661 103.864 102.306 1.00 13.81 N
ATOM 15 C8 A A1904 -58.142 104.009 103.572 1.00 13.81 C
ATOM 16 N7 A A1904 -57.203 104.340 104.411 1.00 13.81 N
ATOM 17 C5 A A1904 -56.060 104.415 103.630 1.00 13.81 C
ATOM 18 C6 A A1904 -54.754 104.712 103.951 1.00 13.81 C
ATOM 19 N6 A A1904 -54.373 105.006 105.195 1.00 13.81 N
ATOM 20 N1 A A1904 -53.870 104.697 102.949 1.00 13.81 N
ATOM 21 C2 A A1904 -54.278 104.407 101.719 1.00 13.81 C
ATOM 22 N3 A A1904 -55.486 104.108 101.307 1.00 13.81 N
ATOM 23 C4 A A1904 -56.327 104.131 102.328 1.00 13.81 C
ATOM 24 P A A1905 -62.512 100.696 101.214 1.00 52.95 P
ATOM 25 OP1 A A1905 -63.758 101.046 100.505 1.00 52.95 O
ATOM 26 OP2 A A1905 -62.403 101.007 102.658 1.00 52.95 O
ATOM 27 O5' A A1905 -62.147 99.179 100.967 1.00 52.95 O
TER
ATOM 1 O3' A B1910 -52.817 109.622 106.080 1.00 15.03 O
ATOM 2 P A B1911 -51.570 110.612 106.246 1.00 18.21 P
ATOM 3 OP1 A B1911 -50.538 109.875 107.053 1.00 18.21 O
ATOM 4 OP2 A B1911 -52.104 111.911 106.763 1.00 18.21 O
ATOM 5 O5' A B1911 -51.075 110.793 104.733 1.00 18.21 O
ATOM 6 C5' A B1911 -49.698 110.910 104.410 1.00 18.21 C
ATOM 7 C4' A B1911 -49.386 110.225 103.107 1.00 18.21 C
ATOM 8 O4' A B1911 -49.758 108.824 103.200 1.00 18.21 O
ATOM 9 C3' A B1911 -50.158 110.720 101.894 1.00 18.21 C
ATOM 10 O3' A B1911 -49.597 111.864 101.307 1.00 18.21 O
ATOM 11 C2' A B1911 -50.149 109.508 100.991 1.00 18.21 C
ATOM 12 O2' A B1911 -48.856 109.307 100.440 1.00 18.21 O
ATOM 13 C1' A B1911 -50.415 108.422 102.014 1.00 18.21 C
ATOM 14 N9 A B1911 -51.847 108.317 102.324 1.00 18.07 N
ATOM 15 C8 A B1911 -52.370 108.370 103.592 1.00 18.07 C
ATOM 16 N7 A B1911 -53.670 108.295 103.642 1.00 18.07 N
ATOM 17 C5 A B1911 -54.022 108.193 102.315 1.00 18.07 C
ATOM 18 C6 A B1911 -55.269 108.072 101.717 1.00 18.07 C
ATOM 19 N6 A B1911 -56.395 108.041 102.426 1.00 18.07 N
ATOM 20 N1 A B1911 -55.311 108.003 100.373 1.00 18.07 N
ATOM 21 C2 A B1911 -54.162 108.043 99.694 1.00 18.07 C
ATOM 22 N3 A B1911 -52.918 108.155 100.151 1.00 18.07 N
ATOM 23 C4 A B1911 -52.919 108.222 101.487 1.00 18.07 C
ATOM 24 P C B1912 -50.378 113.246 101.400 1.00 13.85 P
ATOM 25 OP1 C B1912 -49.583 114.235 100.648 1.00 13.85 O
ATOM 26 OP2 C B1912 -50.665 113.492 102.828 1.00 13.85 O
ATOM 27 O5' C B1912 -51.732 112.941 100.633 1.00 13.85 O
TER
Atoms:
OP1: (-64.413,104.821,102.339)
OP2: (-63.054,105.748,104.313)
C3': (-60.562,102.416,101.169)
C1': (-58.422,103.513,101.114)
C5': (-61.862,104.600,100.850)
O4': (-59.450,104.454,100.949)
C8: (-58.142,104.009,103.572)
O2': (-58.648,101.347,100.080)
C6: (-54.754,104.712,103.951)
C5: (-56.060,104.415,103.630)
C4: (-56.327,104.131,102.328)
P: (-63.221,105.563,102.838)
C4': (-60.644,103.778,100.516)
C2': (-59.055,102.115,101.206)
C2: (-54.278,104.407,101.719)
N1: (-53.870,104.697,102.949)
N3: (-55.486,104.108,101.307)
N6: (-54.373,105.006,105.195)
N7: (-57.203,104.340,104.411)
N9: (-57.661,103.864,102.306)
O5': (-61.907,104.937,102.218)
O3': (-61.323,101.452,100.470)
OP2: (-63.054,105.748,104.313)
C3': (-60.562,102.416,101.169)
C1': (-58.422,103.513,101.114)
C5': (-61.862,104.600,100.850)
O4': (-59.450,104.454,100.949)
C8: (-58.142,104.009,103.572)
O2': (-58.648,101.347,100.080)
C6: (-54.754,104.712,103.951)
C5: (-56.060,104.415,103.630)
C4: (-56.327,104.131,102.328)
P: (-63.221,105.563,102.838)
C4': (-60.644,103.778,100.516)
C2': (-59.055,102.115,101.206)
C2: (-54.278,104.407,101.719)
N1: (-53.870,104.697,102.949)
N3: (-55.486,104.108,101.307)
N6: (-54.373,105.006,105.195)
N7: (-57.203,104.340,104.411)
N9: (-57.661,103.864,102.306)
O5': (-61.907,104.937,102.218)
O3': (-61.323,101.452,100.470)
OP1: (-50.538,109.875,107.053)
OP2: (-52.104,111.911,106.763)
C3': (-50.158,110.720,101.894)
C1': (-50.415,108.422,102.014)
C5': (-49.698,110.910,104.410)
O4': (-49.758,108.824,103.200)
C8: (-52.370,108.370,103.592)
O2': (-48.856,109.307,100.440)
C6: (-55.269,108.072,101.717)
C5: (-54.022,108.193,102.315)
C4: (-52.919,108.222,101.487)
P: (-51.570,110.612,106.246)
C4': (-49.386,110.225,103.107)
C2': (-50.149,109.508,100.991)
C2: (-54.162,108.043,99.694)
N1: (-55.311,108.003,100.373)
N3: (-52.918,108.155,100.151)
N6: (-56.395,108.041,102.426)
N7: (-53.670,108.295,103.642)
N9: (-51.847,108.317,102.324)
O5': (-51.075,110.793,104.733)
O3': (-49.597,111.864,101.307)
OP2: (-52.104,111.911,106.763)
C3': (-50.158,110.720,101.894)
C1': (-50.415,108.422,102.014)
C5': (-49.698,110.910,104.410)
O4': (-49.758,108.824,103.200)
C8: (-52.370,108.370,103.592)
O2': (-48.856,109.307,100.440)
C6: (-55.269,108.072,101.717)
C5: (-54.022,108.193,102.315)
C4: (-52.919,108.222,101.487)
P: (-51.570,110.612,106.246)
C4': (-49.386,110.225,103.107)
C2': (-50.149,109.508,100.991)
C2: (-54.162,108.043,99.694)
N1: (-55.311,108.003,100.373)
N3: (-52.918,108.155,100.151)
N6: (-56.395,108.041,102.426)
N7: (-53.670,108.295,103.642)
N9: (-51.847,108.317,102.324)
O5': (-51.075,110.793,104.733)
O3': (-49.597,111.864,101.307)
Image (generated by PyMOL):