ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0179:0192

Extra

PDB:
ATOM 1 O3' G A 178 71.436 105.109 19.221 1.00 48.83 O
ATOM 2 P A A 179 72.784 105.126 18.354 1.00 50.53 P
ATOM 3 OP1 A A 179 73.226 103.718 18.206 1.00 50.59 O
ATOM 4 OP2 A A 179 73.717 106.123 18.944 1.00 50.31 O
ATOM 5 O5' A A 179 72.272 105.643 16.937 1.00 51.08 O
ATOM 6 C5' A A 179 72.729 105.045 15.708 1.00 51.80 C
ATOM 7 C4' A A 179 71.917 103.804 15.389 1.00 52.08 C
ATOM 8 O4' A A 179 70.535 103.978 15.787 1.00 51.15 O
ATOM 9 C3' A A 179 71.873 103.424 13.918 1.00 52.13 C
ATOM 10 O3' A A 179 71.656 102.032 13.753 1.00 51.89 O
ATOM 11 C2' A A 179 70.658 104.194 13.431 1.00 51.62 C
ATOM 12 O2' A A 179 70.098 103.601 12.282 1.00 53.72 O
ATOM 13 C1' A A 179 69.721 104.116 14.641 1.00 50.51 C
ATOM 14 N9 A A 179 68.971 105.356 14.788 1.00 50.06 N
ATOM 15 C8 A A 179 69.398 106.527 15.361 1.00 50.43 C
ATOM 16 N7 A A 179 68.533 107.505 15.271 1.00 50.82 N
ATOM 17 C5 A A 179 67.455 106.936 14.609 1.00 51.11 C
ATOM 18 C6 A A 179 66.224 107.461 14.177 1.00 51.46 C
ATOM 19 N6 A A 179 65.861 108.736 14.336 1.00 50.48 N
ATOM 20 N1 A A 179 65.371 106.621 13.555 1.00 52.78 N
ATOM 21 C2 A A 179 65.744 105.343 13.371 1.00 52.45 C
ATOM 22 N3 A A 179 66.879 104.739 13.714 1.00 51.16 N
ATOM 23 C4 A A 179 67.702 105.601 14.333 1.00 51.02 C
ATOM 24 P A A 180 72.910 101.046 13.603 1.00 54.02 P
ATOM 25 OP1 A A 180 74.086 101.849 13.159 1.00 53.63 O
ATOM 26 OP2 A A 180 72.483 99.864 12.800 1.00 52.06 O
ATOM 27 O5' A A 180 73.183 100.602 15.108 1.00 53.19 O
TER

ATOM 1 O3' G B 191 64.628 97.793 16.292 1.00 52.83 O
ATOM 2 P A B 192 64.202 99.348 16.293 1.00 52.87 P
ATOM 3 OP1 A B 192 62.901 99.482 16.996 1.00 54.04 O
ATOM 4 OP2 A B 192 64.358 99.914 14.925 1.00 55.18 O
ATOM 5 O5' A B 192 65.298 100.029 17.214 1.00 51.11 O
ATOM 6 C5' A B 192 66.685 99.693 17.085 1.00 49.04 C
ATOM 7 C4' A B 192 67.527 100.887 17.444 1.00 48.05 C
ATOM 8 O4' A B 192 67.357 101.911 16.428 1.00 47.41 O
ATOM 9 C3' A B 192 67.107 101.593 18.720 1.00 47.30 C
ATOM 10 O3' A B 192 67.586 100.951 19.888 1.00 48.72 O
ATOM 11 C2' A B 192 67.686 102.975 18.506 1.00 45.62 C
ATOM 12 O2' A B 192 69.092 102.965 18.660 1.00 46.63 O
ATOM 13 C1' A B 192 67.341 103.190 17.035 1.00 44.53 C
ATOM 14 N9 A B 192 66.001 103.740 16.865 1.00 41.76 N
ATOM 15 C8 A B 192 64.920 103.138 16.269 1.00 41.50 C
ATOM 16 N7 A B 192 63.834 103.872 16.278 1.00 42.94 N
ATOM 17 C5 A B 192 64.225 105.040 16.924 1.00 41.62 C
ATOM 18 C6 A B 192 63.528 106.216 17.271 1.00 39.59 C
ATOM 19 N6 A B 192 62.233 106.418 17.014 1.00 36.85 N
ATOM 20 N1 A B 192 64.217 107.185 17.908 1.00 38.78 N
ATOM 21 C2 A B 192 65.511 106.977 18.183 1.00 38.47 C
ATOM 22 N3 A B 192 66.271 105.919 17.921 1.00 38.64 N
ATOM 23 C4 A B 192 65.561 104.973 17.284 1.00 41.33 C
ATOM 24 P U B 193 66.666 100.929 21.205 1.00 48.49 P
ATOM 25 OP1 U B 193 67.449 100.200 22.239 1.00 48.28 O
ATOM 26 OP2 U B 193 65.295 100.468 20.863 1.00 47.41 O
ATOM 27 O5' U B 193 66.530 102.468 21.584 1.00 46.95 O
TER

Atoms:
OP1: (73.226,103.718,18.206)
OP2: (73.717,106.123,18.944)
C3': (71.873,103.424,13.918)
C1': (69.721,104.116,14.641)
C5': (72.729,105.045,15.708)
O4': (70.535,103.978,15.787)
C8: (69.398,106.527,15.361)
O2': (70.098,103.601,12.282)
C6: (66.224,107.461,14.177)
C5: (67.455,106.936,14.609)
C4: (67.702,105.601,14.333)
P: (72.784,105.126,18.354)
C4': (71.917,103.804,15.389)
C2': (70.658,104.194,13.431)
C2: (65.744,105.343,13.371)
N1: (65.371,106.621,13.555)
N3: (66.879,104.739,13.714)
N6: (65.861,108.736,14.336)
N7: (68.533,107.505,15.271)
N9: (68.971,105.356,14.788)
O5': (72.272,105.643,16.937)
O3': (71.656,102.032,13.753)
OP1: (62.901,99.482,16.996)
OP2: (64.358,99.914,14.925)
C3': (67.107,101.593,18.720)
C1': (67.341,103.190,17.035)
C5': (66.685,99.693,17.085)
O4': (67.357,101.911,16.428)
C8: (64.920,103.138,16.269)
O2': (69.092,102.965,18.660)
C6: (63.528,106.216,17.271)
C5: (64.225,105.040,16.924)
C4: (65.561,104.973,17.284)
P: (64.202,99.348,16.293)
C4': (67.527,100.887,17.444)
C2': (67.686,102.975,18.506)
C2: (65.511,106.977,18.183)
N1: (64.217,107.185,17.908)
N3: (66.271,105.919,17.921)
N6: (62.233,106.418,17.014)
N7: (63.834,103.872,16.278)
N9: (66.001,103.740,16.865)
O5': (65.298,100.029,17.214)
O3': (67.586,100.951,19.888)
Image (generated by PyMOL):
PyMOL image
show in jmol