Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02090:02104
Extra
PDB:
ATOM 1 O3' C A2089 118.914 117.071 29.547 1.00 67.27 O
ATOM 2 P A A2090 118.429 118.310 30.434 1.00 67.30 P
ATOM 3 OP1 A A2090 118.514 119.524 29.581 1.00 67.11 O
ATOM 4 OP2 A A2090 119.160 118.261 31.724 1.00 65.67 O
ATOM 5 O5' A A2090 116.887 118.004 30.696 1.00 66.11 O
ATOM 6 C5' A A2090 115.991 117.722 29.602 1.00 63.58 C
ATOM 7 C4' A A2090 115.006 116.650 30.003 1.00 62.24 C
ATOM 8 O4' A A2090 115.737 115.448 30.364 1.00 62.79 O
ATOM 9 C3' A A2090 114.179 116.970 31.235 1.00 60.92 C
ATOM 10 O3' A A2090 113.036 117.745 30.897 1.00 60.24 O
ATOM 11 C2' A A2090 113.824 115.585 31.756 1.00 60.90 C
ATOM 12 O2' A A2090 112.794 114.964 31.016 1.00 60.76 O
ATOM 13 C1' A A2090 115.121 114.827 31.479 1.00 61.52 C
ATOM 14 N9 A A2090 116.082 114.825 32.586 1.00 61.93 N
ATOM 15 C8 A A2090 117.398 115.207 32.532 1.00 61.69 C
ATOM 16 N7 A A2090 118.042 115.046 33.660 1.00 62.60 N
ATOM 17 C5 A A2090 117.085 114.536 34.523 1.00 61.98 C
ATOM 18 C6 A A2090 117.143 114.138 35.868 1.00 61.80 C
ATOM 19 N6 A A2090 118.255 114.178 36.605 1.00 61.30 N
ATOM 20 N1 A A2090 116.007 113.685 36.438 1.00 62.05 N
ATOM 21 C2 A A2090 114.897 113.634 35.697 1.00 61.54 C
ATOM 22 N3 A A2090 114.719 113.967 34.423 1.00 63.00 N
ATOM 23 C4 A A2090 115.866 114.414 33.883 1.00 62.61 C
ATOM 24 P C A2091 112.792 119.157 31.623 1.00 58.91 P
ATOM 25 OP1 C A2091 111.459 119.646 31.198 1.00 56.70 O
ATOM 26 OP2 C A2091 113.990 120.005 31.400 1.00 59.85 O
ATOM 27 O5' C A2091 112.751 118.793 33.172 1.00 57.23 O
TER
ATOM 1 O3' G B2103 120.920 111.588 41.055 1.00 74.09 O
ATOM 2 P A B2104 121.759 110.232 40.941 1.00 74.95 P
ATOM 3 OP1 A B2104 121.192 109.275 41.932 1.00 74.52 O
ATOM 4 OP2 A B2104 123.203 110.591 41.008 1.00 76.27 O
ATOM 5 O5' A B2104 121.429 109.713 39.470 1.00 73.01 O
ATOM 6 C5' A B2104 120.540 108.596 39.252 1.00 69.63 C
ATOM 7 C4' A B2104 119.104 109.071 39.203 1.00 67.35 C
ATOM 8 O4' A B2104 119.003 110.231 38.331 1.00 65.87 O
ATOM 9 C3' A B2104 118.098 108.057 38.672 1.00 66.40 C
ATOM 10 O3' A B2104 116.824 108.319 39.264 1.00 67.77 O
ATOM 11 C2' A B2104 118.031 108.437 37.200 1.00 65.13 C
ATOM 12 O2' A B2104 116.847 108.015 36.566 1.00 65.73 O
ATOM 13 C1' A B2104 118.085 109.961 37.294 1.00 64.88 C
ATOM 14 N9 A B2104 118.551 110.616 36.073 1.00 64.84 N
ATOM 15 C8 A B2104 119.822 111.029 35.762 1.00 65.08 C
ATOM 16 N7 A B2104 119.931 111.538 34.561 1.00 65.60 N
ATOM 17 C5 A B2104 118.644 111.466 34.049 1.00 64.42 C
ATOM 18 C6 A B2104 118.100 111.833 32.809 1.00 63.59 C
ATOM 19 N6 A B2104 118.816 112.341 31.810 1.00 64.51 N
ATOM 20 N1 A B2104 116.777 111.646 32.623 1.00 64.16 N
ATOM 21 C2 A B2104 116.060 111.113 33.620 1.00 63.87 C
ATOM 22 N3 A B2104 116.460 110.714 34.824 1.00 63.93 N
ATOM 23 C4 A B2104 117.780 110.919 34.977 1.00 64.69 C
ATOM 24 P C B2105 116.086 107.195 40.153 1.00 67.23 P
ATOM 25 OP1 C B2105 116.948 105.982 40.232 1.00 66.50 O
ATOM 26 OP2 C B2105 114.698 107.066 39.638 1.00 66.17 O
ATOM 27 O5' C B2105 116.008 107.886 41.592 1.00 65.03 O
TER
ATOM 2 P A A2090 118.429 118.310 30.434 1.00 67.30 P
ATOM 3 OP1 A A2090 118.514 119.524 29.581 1.00 67.11 O
ATOM 4 OP2 A A2090 119.160 118.261 31.724 1.00 65.67 O
ATOM 5 O5' A A2090 116.887 118.004 30.696 1.00 66.11 O
ATOM 6 C5' A A2090 115.991 117.722 29.602 1.00 63.58 C
ATOM 7 C4' A A2090 115.006 116.650 30.003 1.00 62.24 C
ATOM 8 O4' A A2090 115.737 115.448 30.364 1.00 62.79 O
ATOM 9 C3' A A2090 114.179 116.970 31.235 1.00 60.92 C
ATOM 10 O3' A A2090 113.036 117.745 30.897 1.00 60.24 O
ATOM 11 C2' A A2090 113.824 115.585 31.756 1.00 60.90 C
ATOM 12 O2' A A2090 112.794 114.964 31.016 1.00 60.76 O
ATOM 13 C1' A A2090 115.121 114.827 31.479 1.00 61.52 C
ATOM 14 N9 A A2090 116.082 114.825 32.586 1.00 61.93 N
ATOM 15 C8 A A2090 117.398 115.207 32.532 1.00 61.69 C
ATOM 16 N7 A A2090 118.042 115.046 33.660 1.00 62.60 N
ATOM 17 C5 A A2090 117.085 114.536 34.523 1.00 61.98 C
ATOM 18 C6 A A2090 117.143 114.138 35.868 1.00 61.80 C
ATOM 19 N6 A A2090 118.255 114.178 36.605 1.00 61.30 N
ATOM 20 N1 A A2090 116.007 113.685 36.438 1.00 62.05 N
ATOM 21 C2 A A2090 114.897 113.634 35.697 1.00 61.54 C
ATOM 22 N3 A A2090 114.719 113.967 34.423 1.00 63.00 N
ATOM 23 C4 A A2090 115.866 114.414 33.883 1.00 62.61 C
ATOM 24 P C A2091 112.792 119.157 31.623 1.00 58.91 P
ATOM 25 OP1 C A2091 111.459 119.646 31.198 1.00 56.70 O
ATOM 26 OP2 C A2091 113.990 120.005 31.400 1.00 59.85 O
ATOM 27 O5' C A2091 112.751 118.793 33.172 1.00 57.23 O
TER
ATOM 1 O3' G B2103 120.920 111.588 41.055 1.00 74.09 O
ATOM 2 P A B2104 121.759 110.232 40.941 1.00 74.95 P
ATOM 3 OP1 A B2104 121.192 109.275 41.932 1.00 74.52 O
ATOM 4 OP2 A B2104 123.203 110.591 41.008 1.00 76.27 O
ATOM 5 O5' A B2104 121.429 109.713 39.470 1.00 73.01 O
ATOM 6 C5' A B2104 120.540 108.596 39.252 1.00 69.63 C
ATOM 7 C4' A B2104 119.104 109.071 39.203 1.00 67.35 C
ATOM 8 O4' A B2104 119.003 110.231 38.331 1.00 65.87 O
ATOM 9 C3' A B2104 118.098 108.057 38.672 1.00 66.40 C
ATOM 10 O3' A B2104 116.824 108.319 39.264 1.00 67.77 O
ATOM 11 C2' A B2104 118.031 108.437 37.200 1.00 65.13 C
ATOM 12 O2' A B2104 116.847 108.015 36.566 1.00 65.73 O
ATOM 13 C1' A B2104 118.085 109.961 37.294 1.00 64.88 C
ATOM 14 N9 A B2104 118.551 110.616 36.073 1.00 64.84 N
ATOM 15 C8 A B2104 119.822 111.029 35.762 1.00 65.08 C
ATOM 16 N7 A B2104 119.931 111.538 34.561 1.00 65.60 N
ATOM 17 C5 A B2104 118.644 111.466 34.049 1.00 64.42 C
ATOM 18 C6 A B2104 118.100 111.833 32.809 1.00 63.59 C
ATOM 19 N6 A B2104 118.816 112.341 31.810 1.00 64.51 N
ATOM 20 N1 A B2104 116.777 111.646 32.623 1.00 64.16 N
ATOM 21 C2 A B2104 116.060 111.113 33.620 1.00 63.87 C
ATOM 22 N3 A B2104 116.460 110.714 34.824 1.00 63.93 N
ATOM 23 C4 A B2104 117.780 110.919 34.977 1.00 64.69 C
ATOM 24 P C B2105 116.086 107.195 40.153 1.00 67.23 P
ATOM 25 OP1 C B2105 116.948 105.982 40.232 1.00 66.50 O
ATOM 26 OP2 C B2105 114.698 107.066 39.638 1.00 66.17 O
ATOM 27 O5' C B2105 116.008 107.886 41.592 1.00 65.03 O
TER
Atoms:
OP1: (118.514,119.524,29.581)
OP2: (119.160,118.261,31.724)
C3': (114.179,116.970,31.235)
C1': (115.121,114.827,31.479)
C5': (115.991,117.722,29.602)
O4': (115.737,115.448,30.364)
C8: (117.398,115.207,32.532)
O2': (112.794,114.964,31.016)
C6: (117.143,114.138,35.868)
C5: (117.085,114.536,34.523)
C4: (115.866,114.414,33.883)
P: (118.429,118.310,30.434)
C4': (115.006,116.650,30.003)
C2': (113.824,115.585,31.756)
C2: (114.897,113.634,35.697)
N1: (116.007,113.685,36.438)
N3: (114.719,113.967,34.423)
N6: (118.255,114.178,36.605)
N7: (118.042,115.046,33.660)
N9: (116.082,114.825,32.586)
O5': (116.887,118.004,30.696)
O3': (113.036,117.745,30.897)
OP2: (119.160,118.261,31.724)
C3': (114.179,116.970,31.235)
C1': (115.121,114.827,31.479)
C5': (115.991,117.722,29.602)
O4': (115.737,115.448,30.364)
C8: (117.398,115.207,32.532)
O2': (112.794,114.964,31.016)
C6: (117.143,114.138,35.868)
C5: (117.085,114.536,34.523)
C4: (115.866,114.414,33.883)
P: (118.429,118.310,30.434)
C4': (115.006,116.650,30.003)
C2': (113.824,115.585,31.756)
C2: (114.897,113.634,35.697)
N1: (116.007,113.685,36.438)
N3: (114.719,113.967,34.423)
N6: (118.255,114.178,36.605)
N7: (118.042,115.046,33.660)
N9: (116.082,114.825,32.586)
O5': (116.887,118.004,30.696)
O3': (113.036,117.745,30.897)
OP1: (121.192,109.275,41.932)
OP2: (123.203,110.591,41.008)
C3': (118.098,108.057,38.672)
C1': (118.085,109.961,37.294)
C5': (120.540,108.596,39.252)
O4': (119.003,110.231,38.331)
C8: (119.822,111.029,35.762)
O2': (116.847,108.015,36.566)
C6: (118.100,111.833,32.809)
C5: (118.644,111.466,34.049)
C4: (117.780,110.919,34.977)
P: (121.759,110.232,40.941)
C4': (119.104,109.071,39.203)
C2': (118.031,108.437,37.200)
C2: (116.060,111.113,33.620)
N1: (116.777,111.646,32.623)
N3: (116.460,110.714,34.824)
N6: (118.816,112.341,31.810)
N7: (119.931,111.538,34.561)
N9: (118.551,110.616,36.073)
O5': (121.429,109.713,39.470)
O3': (116.824,108.319,39.264)
OP2: (123.203,110.591,41.008)
C3': (118.098,108.057,38.672)
C1': (118.085,109.961,37.294)
C5': (120.540,108.596,39.252)
O4': (119.003,110.231,38.331)
C8: (119.822,111.029,35.762)
O2': (116.847,108.015,36.566)
C6: (118.100,111.833,32.809)
C5: (118.644,111.466,34.049)
C4: (117.780,110.919,34.977)
P: (121.759,110.232,40.941)
C4': (119.104,109.071,39.203)
C2': (118.031,108.437,37.200)
C2: (116.060,111.113,33.620)
N1: (116.777,111.646,32.623)
N3: (116.460,110.714,34.824)
N6: (118.816,112.341,31.810)
N7: (119.931,111.538,34.561)
N9: (118.551,110.616,36.073)
O5': (121.429,109.713,39.470)
O3': (116.824,108.319,39.264)
Image (generated by PyMOL):