Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12590:12603
Extra
PDB:
ATOM 1 O3' A A2589 2.960 -5.728 11.272 1.00 57.97 O
ATOM 2 P A A2590 1.966 -6.050 10.054 1.00 58.65 P
ATOM 3 OP1 A A2590 2.594 -7.177 9.276 1.00 58.80 O
ATOM 4 OP2 A A2590 1.678 -4.754 9.344 1.00 59.01 O
ATOM 5 O5' A A2590 0.652 -6.535 10.835 1.00 58.65 O
ATOM 6 C5' A A2590 0.398 -7.905 11.005 1.00 58.64 C
ATOM 7 C4' A A2590 -0.392 -8.194 12.250 1.00 58.36 C
ATOM 8 O4' A A2590 0.419 -8.020 13.432 1.00 57.74 O
ATOM 9 C3' A A2590 -1.584 -7.319 12.539 1.00 58.54 C
ATOM 10 O3' A A2590 -2.674 -7.556 11.658 1.00 59.14 O
ATOM 11 C2' A A2590 -1.865 -7.707 13.986 1.00 58.09 C
ATOM 12 O2' A A2590 -2.468 -8.985 14.029 1.00 58.22 O
ATOM 13 C1' A A2590 -0.436 -7.837 14.540 1.00 57.55 C
ATOM 14 N9 A A2590 -0.026 -6.632 15.278 1.00 57.20 N
ATOM 15 C8 A A2590 0.778 -5.575 14.930 1.00 57.15 C
ATOM 16 N7 A A2590 0.843 -4.650 15.850 1.00 56.84 N
ATOM 17 C5 A A2590 0.037 -5.147 16.857 1.00 56.67 C
ATOM 18 C6 A A2590 -0.313 -4.630 18.113 1.00 56.34 C
ATOM 19 N6 A A2590 0.163 -3.444 18.566 1.00 56.12 N
ATOM 20 N1 A A2590 -1.155 -5.379 18.877 1.00 56.27 N
ATOM 21 C2 A A2590 -1.595 -6.539 18.367 1.00 56.52 C
ATOM 22 N3 A A2590 -1.355 -7.133 17.205 1.00 56.85 N
ATOM 23 C4 A A2590 -0.512 -6.362 16.513 1.00 56.89 C
ATOM 24 P G A2591 -3.935 -6.537 11.617 1.00 57.72 P
ATOM 25 OP1 G A2591 -4.947 -7.135 10.678 1.00 58.33 O
ATOM 26 OP2 G A2591 -3.404 -5.157 11.325 1.00 57.72 O
ATOM 27 O5' G A2591 -4.472 -6.602 13.106 1.00 57.31 O
TER
ATOM 1 O3' G B2602 2.097 -1.842 23.359 1.00 51.53 O
ATOM 2 P A B2603 3.205 -2.990 23.450 1.00 49.67 P
ATOM 3 OP1 A B2603 3.718 -3.018 24.871 1.00 49.15 O
ATOM 4 OP2 A B2603 4.216 -2.743 22.327 1.00 49.80 O
ATOM 5 O5' A B2603 2.308 -4.274 23.161 1.00 49.90 O
ATOM 6 C5' A B2603 1.174 -4.518 23.971 1.00 49.91 C
ATOM 7 C4' A B2603 0.476 -5.768 23.566 1.00 50.15 C
ATOM 8 O4' A B2603 0.075 -5.657 22.181 1.00 50.66 O
ATOM 9 C3' A B2603 1.325 -7.004 23.616 1.00 49.93 C
ATOM 10 O3' A B2603 1.332 -7.608 24.886 1.00 49.56 O
ATOM 11 C2' A B2603 0.758 -7.882 22.509 1.00 50.38 C
ATOM 12 O2' A B2603 -0.383 -8.580 22.945 1.00 50.51 O
ATOM 13 C1' A B2603 0.309 -6.856 21.504 1.00 50.80 C
ATOM 14 N9 A B2603 1.299 -6.607 20.464 1.00 50.90 N
ATOM 15 C8 A B2603 1.989 -5.458 20.220 1.00 50.85 C
ATOM 16 N7 A B2603 2.713 -5.576 19.138 1.00 51.03 N
ATOM 17 C5 A B2603 2.468 -6.864 18.673 1.00 51.21 C
ATOM 18 C6 A B2603 2.939 -7.595 17.573 1.00 51.47 C
ATOM 19 N6 A B2603 3.797 -7.125 16.674 1.00 51.59 N
ATOM 20 N1 A B2603 2.476 -8.848 17.421 1.00 51.62 N
ATOM 21 C2 A B2603 1.612 -9.343 18.330 1.00 51.51 C
ATOM 22 N3 A B2603 1.082 -8.768 19.403 1.00 51.28 N
ATOM 23 C4 A B2603 1.577 -7.513 19.497 1.00 51.14 C
ATOM 24 P C B2604 2.626 -8.445 25.323 1.00 48.39 P
ATOM 25 OP1 C B2604 2.310 -9.113 26.644 1.00 48.08 O
ATOM 26 OP2 C B2604 3.820 -7.512 25.252 1.00 48.16 O
ATOM 27 O5' C B2604 2.711 -9.505 24.141 1.00 48.71 O
TER
ATOM 2 P A A2590 1.966 -6.050 10.054 1.00 58.65 P
ATOM 3 OP1 A A2590 2.594 -7.177 9.276 1.00 58.80 O
ATOM 4 OP2 A A2590 1.678 -4.754 9.344 1.00 59.01 O
ATOM 5 O5' A A2590 0.652 -6.535 10.835 1.00 58.65 O
ATOM 6 C5' A A2590 0.398 -7.905 11.005 1.00 58.64 C
ATOM 7 C4' A A2590 -0.392 -8.194 12.250 1.00 58.36 C
ATOM 8 O4' A A2590 0.419 -8.020 13.432 1.00 57.74 O
ATOM 9 C3' A A2590 -1.584 -7.319 12.539 1.00 58.54 C
ATOM 10 O3' A A2590 -2.674 -7.556 11.658 1.00 59.14 O
ATOM 11 C2' A A2590 -1.865 -7.707 13.986 1.00 58.09 C
ATOM 12 O2' A A2590 -2.468 -8.985 14.029 1.00 58.22 O
ATOM 13 C1' A A2590 -0.436 -7.837 14.540 1.00 57.55 C
ATOM 14 N9 A A2590 -0.026 -6.632 15.278 1.00 57.20 N
ATOM 15 C8 A A2590 0.778 -5.575 14.930 1.00 57.15 C
ATOM 16 N7 A A2590 0.843 -4.650 15.850 1.00 56.84 N
ATOM 17 C5 A A2590 0.037 -5.147 16.857 1.00 56.67 C
ATOM 18 C6 A A2590 -0.313 -4.630 18.113 1.00 56.34 C
ATOM 19 N6 A A2590 0.163 -3.444 18.566 1.00 56.12 N
ATOM 20 N1 A A2590 -1.155 -5.379 18.877 1.00 56.27 N
ATOM 21 C2 A A2590 -1.595 -6.539 18.367 1.00 56.52 C
ATOM 22 N3 A A2590 -1.355 -7.133 17.205 1.00 56.85 N
ATOM 23 C4 A A2590 -0.512 -6.362 16.513 1.00 56.89 C
ATOM 24 P G A2591 -3.935 -6.537 11.617 1.00 57.72 P
ATOM 25 OP1 G A2591 -4.947 -7.135 10.678 1.00 58.33 O
ATOM 26 OP2 G A2591 -3.404 -5.157 11.325 1.00 57.72 O
ATOM 27 O5' G A2591 -4.472 -6.602 13.106 1.00 57.31 O
TER
ATOM 1 O3' G B2602 2.097 -1.842 23.359 1.00 51.53 O
ATOM 2 P A B2603 3.205 -2.990 23.450 1.00 49.67 P
ATOM 3 OP1 A B2603 3.718 -3.018 24.871 1.00 49.15 O
ATOM 4 OP2 A B2603 4.216 -2.743 22.327 1.00 49.80 O
ATOM 5 O5' A B2603 2.308 -4.274 23.161 1.00 49.90 O
ATOM 6 C5' A B2603 1.174 -4.518 23.971 1.00 49.91 C
ATOM 7 C4' A B2603 0.476 -5.768 23.566 1.00 50.15 C
ATOM 8 O4' A B2603 0.075 -5.657 22.181 1.00 50.66 O
ATOM 9 C3' A B2603 1.325 -7.004 23.616 1.00 49.93 C
ATOM 10 O3' A B2603 1.332 -7.608 24.886 1.00 49.56 O
ATOM 11 C2' A B2603 0.758 -7.882 22.509 1.00 50.38 C
ATOM 12 O2' A B2603 -0.383 -8.580 22.945 1.00 50.51 O
ATOM 13 C1' A B2603 0.309 -6.856 21.504 1.00 50.80 C
ATOM 14 N9 A B2603 1.299 -6.607 20.464 1.00 50.90 N
ATOM 15 C8 A B2603 1.989 -5.458 20.220 1.00 50.85 C
ATOM 16 N7 A B2603 2.713 -5.576 19.138 1.00 51.03 N
ATOM 17 C5 A B2603 2.468 -6.864 18.673 1.00 51.21 C
ATOM 18 C6 A B2603 2.939 -7.595 17.573 1.00 51.47 C
ATOM 19 N6 A B2603 3.797 -7.125 16.674 1.00 51.59 N
ATOM 20 N1 A B2603 2.476 -8.848 17.421 1.00 51.62 N
ATOM 21 C2 A B2603 1.612 -9.343 18.330 1.00 51.51 C
ATOM 22 N3 A B2603 1.082 -8.768 19.403 1.00 51.28 N
ATOM 23 C4 A B2603 1.577 -7.513 19.497 1.00 51.14 C
ATOM 24 P C B2604 2.626 -8.445 25.323 1.00 48.39 P
ATOM 25 OP1 C B2604 2.310 -9.113 26.644 1.00 48.08 O
ATOM 26 OP2 C B2604 3.820 -7.512 25.252 1.00 48.16 O
ATOM 27 O5' C B2604 2.711 -9.505 24.141 1.00 48.71 O
TER
Atoms:
OP1: (2.594,-7.177,9.276)
OP2: (1.678,-4.754,9.344)
C3': (-1.584,-7.319,12.539)
C1': (-0.436,-7.837,14.540)
C5': (0.398,-7.905,11.005)
O4': (0.419,-8.020,13.432)
C8: (0.778,-5.575,14.930)
O2': (-2.468,-8.985,14.029)
C6: (-0.313,-4.630,18.113)
C5: (0.037,-5.147,16.857)
C4: (-0.512,-6.362,16.513)
P: (1.966,-6.050,10.054)
C4': (-0.392,-8.194,12.250)
C2': (-1.865,-7.707,13.986)
C2: (-1.595,-6.539,18.367)
N1: (-1.155,-5.379,18.877)
N3: (-1.355,-7.133,17.205)
N6: (0.163,-3.444,18.566)
N7: (0.843,-4.650,15.850)
N9: (-0.026,-6.632,15.278)
O5': (0.652,-6.535,10.835)
O3': (-2.674,-7.556,11.658)
OP2: (1.678,-4.754,9.344)
C3': (-1.584,-7.319,12.539)
C1': (-0.436,-7.837,14.540)
C5': (0.398,-7.905,11.005)
O4': (0.419,-8.020,13.432)
C8: (0.778,-5.575,14.930)
O2': (-2.468,-8.985,14.029)
C6: (-0.313,-4.630,18.113)
C5: (0.037,-5.147,16.857)
C4: (-0.512,-6.362,16.513)
P: (1.966,-6.050,10.054)
C4': (-0.392,-8.194,12.250)
C2': (-1.865,-7.707,13.986)
C2: (-1.595,-6.539,18.367)
N1: (-1.155,-5.379,18.877)
N3: (-1.355,-7.133,17.205)
N6: (0.163,-3.444,18.566)
N7: (0.843,-4.650,15.850)
N9: (-0.026,-6.632,15.278)
O5': (0.652,-6.535,10.835)
O3': (-2.674,-7.556,11.658)
OP1: (3.718,-3.018,24.871)
OP2: (4.216,-2.743,22.327)
C3': (1.325,-7.004,23.616)
C1': (0.309,-6.856,21.504)
C5': (1.174,-4.518,23.971)
O4': (0.075,-5.657,22.181)
C8: (1.989,-5.458,20.220)
O2': (-0.383,-8.580,22.945)
C6: (2.939,-7.595,17.573)
C5: (2.468,-6.864,18.673)
C4: (1.577,-7.513,19.497)
P: (3.205,-2.990,23.450)
C4': (0.476,-5.768,23.566)
C2': (0.758,-7.882,22.509)
C2: (1.612,-9.343,18.330)
N1: (2.476,-8.848,17.421)
N3: (1.082,-8.768,19.403)
N6: (3.797,-7.125,16.674)
N7: (2.713,-5.576,19.138)
N9: (1.299,-6.607,20.464)
O5': (2.308,-4.274,23.161)
O3': (1.332,-7.608,24.886)
OP2: (4.216,-2.743,22.327)
C3': (1.325,-7.004,23.616)
C1': (0.309,-6.856,21.504)
C5': (1.174,-4.518,23.971)
O4': (0.075,-5.657,22.181)
C8: (1.989,-5.458,20.220)
O2': (-0.383,-8.580,22.945)
C6: (2.939,-7.595,17.573)
C5: (2.468,-6.864,18.673)
C4: (1.577,-7.513,19.497)
P: (3.205,-2.990,23.450)
C4': (0.476,-5.768,23.566)
C2': (0.758,-7.882,22.509)
C2: (1.612,-9.343,18.330)
N1: (2.476,-8.848,17.421)
N3: (1.082,-8.768,19.403)
N6: (3.797,-7.125,16.674)
N7: (2.713,-5.576,19.138)
N9: (1.299,-6.607,20.464)
O5': (2.308,-4.274,23.161)
O3': (1.332,-7.608,24.886)
Image (generated by PyMOL):