Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5P:E21:E61
Extra
PDB:
ATOM 1 O3' G A 20 -4.092 7.713 113.914 1.00 82.51 O
ATOM 2 P A A 21 -2.580 7.708 113.381 1.00 80.62 P
ATOM 3 OP1 A A 21 -2.590 7.305 111.954 1.00104.64 O
ATOM 4 OP2 A A 21 -1.767 6.939 114.353 1.00 87.29 O
ATOM 5 O5' A A 21 -2.166 9.238 113.479 1.00 89.41 O
ATOM 6 C5' A A 21 -1.827 9.986 112.319 1.00 89.70 C
ATOM 7 C4' A A 21 -3.076 10.457 111.608 1.00 87.42 C
ATOM 8 O4' A A 21 -4.129 10.744 112.564 1.00 72.35 O
ATOM 9 C3' A A 21 -2.888 11.754 110.838 1.00 92.03 C
ATOM 10 O3' A A 21 -2.338 11.526 109.550 1.00100.27 O
ATOM 11 C2' A A 21 -4.300 12.315 110.780 1.00 80.96 C
ATOM 12 O2' A A 21 -5.068 11.747 109.746 1.00 76.40 O
ATOM 13 C1' A A 21 -4.844 11.900 112.149 1.00 84.14 C
ATOM 14 N9 A A 21 -4.647 12.934 113.158 1.00 77.55 N
ATOM 15 C8 A A 21 -3.935 12.829 114.324 1.00 83.11 C
ATOM 16 N7 A A 21 -3.924 13.926 115.038 1.00 86.33 N
ATOM 17 C5 A A 21 -4.682 14.814 114.291 1.00 83.58 C
ATOM 18 C6 A A 21 -5.047 16.149 114.507 1.00 83.59 C
ATOM 19 N6 A A 21 -4.681 16.847 115.583 1.00 87.10 N
ATOM 20 N1 A A 21 -5.809 16.753 113.571 1.00 86.00 N
ATOM 21 C2 A A 21 -6.174 16.045 112.492 1.00 91.73 C
ATOM 22 N3 A A 21 -5.893 14.778 112.177 1.00 87.24 N
ATOM 23 C4 A A 21 -5.134 14.215 113.130 1.00 80.78 C
ATOM 24 P A A 22 -1.181 12.496 109.009 1.00 99.62 P
ATOM 25 OP1 A A 22 -0.782 12.021 107.661 1.00107.77 O
ATOM 26 OP2 A A 22 -0.160 12.605 110.080 1.00110.04 O
ATOM 27 O5' A A 22 -1.908 13.904 108.865 1.00 90.08 O
TER
ATOM 1 O3' U B 60 -7.699 18.602 120.898 1.00 96.18 O
ATOM 2 P A B 61 -8.482 17.213 120.694 1.00 89.67 P
ATOM 3 OP1 A B 61 -9.290 16.987 121.909 1.00 87.27 O
ATOM 4 OP2 A B 61 -7.499 16.186 120.270 1.00 88.66 O
ATOM 5 O5' A B 61 -9.482 17.528 119.490 1.00 95.89 O
ATOM 6 C5' A B 61 -9.837 18.873 119.182 1.00 88.59 C
ATOM 7 C4' A B 61 -10.174 18.994 117.714 1.00 97.29 C
ATOM 8 O4' A B 61 -8.985 18.714 116.928 1.00100.72 O
ATOM 9 C3' A B 61 -11.217 18.005 117.216 1.00101.01 C
ATOM 10 O3' A B 61 -12.522 18.550 117.361 1.00 93.98 O
ATOM 11 C2' A B 61 -10.855 17.858 115.742 1.00105.21 C
ATOM 12 O2' A B 61 -11.370 18.919 114.961 1.00107.90 O
ATOM 13 C1' A B 61 -9.326 17.938 115.789 1.00101.10 C
ATOM 14 N9 A B 61 -8.667 16.635 115.911 1.00 97.11 N
ATOM 15 C8 A B 61 -7.878 16.194 116.945 1.00 94.99 C
ATOM 16 N7 A B 61 -7.438 14.968 116.792 1.00 91.66 N
ATOM 17 C5 A B 61 -7.968 14.575 115.574 1.00 93.26 C
ATOM 18 C6 A B 61 -7.878 13.376 114.848 1.00 95.59 C
ATOM 19 N6 A B 61 -7.188 12.306 115.263 1.00 94.78 N
ATOM 20 N1 A B 61 -8.529 13.308 113.665 1.00 94.93 N
ATOM 21 C2 A B 61 -9.219 14.377 113.251 1.00 97.43 C
ATOM 22 N3 A B 61 -9.380 15.558 113.846 1.00 97.90 N
ATOM 23 C4 A B 61 -8.722 15.593 115.016 1.00 96.09 C
ATOM 24 P C B 62 -13.728 17.618 117.873 1.00 98.48 P
ATOM 25 OP1 C B 62 -14.981 18.326 117.529 1.00 92.37 O
ATOM 26 OP2 C B 62 -13.460 17.243 119.286 1.00 95.60 O
ATOM 27 O5' C B 62 -13.640 16.303 116.976 1.00 88.00 O
TER
ATOM 2 P A A 21 -2.580 7.708 113.381 1.00 80.62 P
ATOM 3 OP1 A A 21 -2.590 7.305 111.954 1.00104.64 O
ATOM 4 OP2 A A 21 -1.767 6.939 114.353 1.00 87.29 O
ATOM 5 O5' A A 21 -2.166 9.238 113.479 1.00 89.41 O
ATOM 6 C5' A A 21 -1.827 9.986 112.319 1.00 89.70 C
ATOM 7 C4' A A 21 -3.076 10.457 111.608 1.00 87.42 C
ATOM 8 O4' A A 21 -4.129 10.744 112.564 1.00 72.35 O
ATOM 9 C3' A A 21 -2.888 11.754 110.838 1.00 92.03 C
ATOM 10 O3' A A 21 -2.338 11.526 109.550 1.00100.27 O
ATOM 11 C2' A A 21 -4.300 12.315 110.780 1.00 80.96 C
ATOM 12 O2' A A 21 -5.068 11.747 109.746 1.00 76.40 O
ATOM 13 C1' A A 21 -4.844 11.900 112.149 1.00 84.14 C
ATOM 14 N9 A A 21 -4.647 12.934 113.158 1.00 77.55 N
ATOM 15 C8 A A 21 -3.935 12.829 114.324 1.00 83.11 C
ATOM 16 N7 A A 21 -3.924 13.926 115.038 1.00 86.33 N
ATOM 17 C5 A A 21 -4.682 14.814 114.291 1.00 83.58 C
ATOM 18 C6 A A 21 -5.047 16.149 114.507 1.00 83.59 C
ATOM 19 N6 A A 21 -4.681 16.847 115.583 1.00 87.10 N
ATOM 20 N1 A A 21 -5.809 16.753 113.571 1.00 86.00 N
ATOM 21 C2 A A 21 -6.174 16.045 112.492 1.00 91.73 C
ATOM 22 N3 A A 21 -5.893 14.778 112.177 1.00 87.24 N
ATOM 23 C4 A A 21 -5.134 14.215 113.130 1.00 80.78 C
ATOM 24 P A A 22 -1.181 12.496 109.009 1.00 99.62 P
ATOM 25 OP1 A A 22 -0.782 12.021 107.661 1.00107.77 O
ATOM 26 OP2 A A 22 -0.160 12.605 110.080 1.00110.04 O
ATOM 27 O5' A A 22 -1.908 13.904 108.865 1.00 90.08 O
TER
ATOM 1 O3' U B 60 -7.699 18.602 120.898 1.00 96.18 O
ATOM 2 P A B 61 -8.482 17.213 120.694 1.00 89.67 P
ATOM 3 OP1 A B 61 -9.290 16.987 121.909 1.00 87.27 O
ATOM 4 OP2 A B 61 -7.499 16.186 120.270 1.00 88.66 O
ATOM 5 O5' A B 61 -9.482 17.528 119.490 1.00 95.89 O
ATOM 6 C5' A B 61 -9.837 18.873 119.182 1.00 88.59 C
ATOM 7 C4' A B 61 -10.174 18.994 117.714 1.00 97.29 C
ATOM 8 O4' A B 61 -8.985 18.714 116.928 1.00100.72 O
ATOM 9 C3' A B 61 -11.217 18.005 117.216 1.00101.01 C
ATOM 10 O3' A B 61 -12.522 18.550 117.361 1.00 93.98 O
ATOM 11 C2' A B 61 -10.855 17.858 115.742 1.00105.21 C
ATOM 12 O2' A B 61 -11.370 18.919 114.961 1.00107.90 O
ATOM 13 C1' A B 61 -9.326 17.938 115.789 1.00101.10 C
ATOM 14 N9 A B 61 -8.667 16.635 115.911 1.00 97.11 N
ATOM 15 C8 A B 61 -7.878 16.194 116.945 1.00 94.99 C
ATOM 16 N7 A B 61 -7.438 14.968 116.792 1.00 91.66 N
ATOM 17 C5 A B 61 -7.968 14.575 115.574 1.00 93.26 C
ATOM 18 C6 A B 61 -7.878 13.376 114.848 1.00 95.59 C
ATOM 19 N6 A B 61 -7.188 12.306 115.263 1.00 94.78 N
ATOM 20 N1 A B 61 -8.529 13.308 113.665 1.00 94.93 N
ATOM 21 C2 A B 61 -9.219 14.377 113.251 1.00 97.43 C
ATOM 22 N3 A B 61 -9.380 15.558 113.846 1.00 97.90 N
ATOM 23 C4 A B 61 -8.722 15.593 115.016 1.00 96.09 C
ATOM 24 P C B 62 -13.728 17.618 117.873 1.00 98.48 P
ATOM 25 OP1 C B 62 -14.981 18.326 117.529 1.00 92.37 O
ATOM 26 OP2 C B 62 -13.460 17.243 119.286 1.00 95.60 O
ATOM 27 O5' C B 62 -13.640 16.303 116.976 1.00 88.00 O
TER
Atoms:
OP1: (-2.590,7.305,111.954)
OP2: (-1.767,6.939,114.353)
C3': (-2.888,11.754,110.838)
C1': (-4.844,11.900,112.149)
C5': (-1.827,9.986,112.319)
O4': (-4.129,10.744,112.564)
C8: (-3.935,12.829,114.324)
O2': (-5.068,11.747,109.746)
C6: (-5.047,16.149,114.507)
C5: (-4.682,14.814,114.291)
C4: (-5.134,14.215,113.130)
P: (-2.580,7.708,113.381)
C4': (-3.076,10.457,111.608)
C2': (-4.300,12.315,110.780)
C2: (-6.174,16.045,112.492)
N1: (-5.809,16.753,113.571)
N3: (-5.893,14.778,112.177)
N6: (-4.681,16.847,115.583)
N7: (-3.924,13.926,115.038)
N9: (-4.647,12.934,113.158)
O5': (-2.166,9.238,113.479)
O3': (-2.338,11.526,109.550)
OP2: (-1.767,6.939,114.353)
C3': (-2.888,11.754,110.838)
C1': (-4.844,11.900,112.149)
C5': (-1.827,9.986,112.319)
O4': (-4.129,10.744,112.564)
C8: (-3.935,12.829,114.324)
O2': (-5.068,11.747,109.746)
C6: (-5.047,16.149,114.507)
C5: (-4.682,14.814,114.291)
C4: (-5.134,14.215,113.130)
P: (-2.580,7.708,113.381)
C4': (-3.076,10.457,111.608)
C2': (-4.300,12.315,110.780)
C2: (-6.174,16.045,112.492)
N1: (-5.809,16.753,113.571)
N3: (-5.893,14.778,112.177)
N6: (-4.681,16.847,115.583)
N7: (-3.924,13.926,115.038)
N9: (-4.647,12.934,113.158)
O5': (-2.166,9.238,113.479)
O3': (-2.338,11.526,109.550)
OP1: (-9.290,16.987,121.909)
OP2: (-7.499,16.186,120.270)
C3': (-11.217,18.005,117.216)
C1': (-9.326,17.938,115.789)
C5': (-9.837,18.873,119.182)
O4': (-8.985,18.714,116.928)
C8: (-7.878,16.194,116.945)
O2': (-11.370,18.919,114.961)
C6: (-7.878,13.376,114.848)
C5: (-7.968,14.575,115.574)
C4: (-8.722,15.593,115.016)
P: (-8.482,17.213,120.694)
C4': (-10.174,18.994,117.714)
C2': (-10.855,17.858,115.742)
C2: (-9.219,14.377,113.251)
N1: (-8.529,13.308,113.665)
N3: (-9.380,15.558,113.846)
N6: (-7.188,12.306,115.263)
N7: (-7.438,14.968,116.792)
N9: (-8.667,16.635,115.911)
O5': (-9.482,17.528,119.490)
O3': (-12.522,18.550,117.361)
OP2: (-7.499,16.186,120.270)
C3': (-11.217,18.005,117.216)
C1': (-9.326,17.938,115.789)
C5': (-9.837,18.873,119.182)
O4': (-8.985,18.714,116.928)
C8: (-7.878,16.194,116.945)
O2': (-11.370,18.919,114.961)
C6: (-7.878,13.376,114.848)
C5: (-7.968,14.575,115.574)
C4: (-8.722,15.593,115.016)
P: (-8.482,17.213,120.694)
C4': (-10.174,18.994,117.714)
C2': (-10.855,17.858,115.742)
C2: (-9.219,14.377,113.251)
N1: (-8.529,13.308,113.665)
N3: (-9.380,15.558,113.846)
N6: (-7.188,12.306,115.263)
N7: (-7.438,14.968,116.792)
N9: (-8.667,16.635,115.911)
O5': (-9.482,17.528,119.490)
O3': (-12.522,18.550,117.361)
Image (generated by PyMOL):