ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1KD1:A1056:A1218

Extra

PDB:
ATOM 1 O3' U A1055 15.946 92.537 111.482 1.00 34.22 O
ATOM 2 P A A1056 17.321 92.875 112.214 1.00 34.02 P
ATOM 3 OP1 A A1056 17.732 91.708 112.999 1.00 34.78 O
ATOM 4 OP2 A A1056 17.159 94.185 112.885 1.00 32.66 O
ATOM 5 O5' A A1056 18.338 92.985 111.004 1.00 33.29 O
ATOM 6 C5' A A1056 18.784 91.808 110.337 1.00 35.75 C
ATOM 7 C4' A A1056 20.037 92.106 109.570 1.00 38.40 C
ATOM 8 O4' A A1056 19.749 93.041 108.502 1.00 38.17 O
ATOM 9 C3' A A1056 21.145 92.763 110.378 1.00 38.85 C
ATOM 10 O3' A A1056 21.893 91.747 111.059 1.00 38.78 O
ATOM 11 C2' A A1056 21.961 93.436 109.285 1.00 39.42 C
ATOM 12 O2' A A1056 22.785 92.497 108.630 1.00 40.58 O
ATOM 13 C1' A A1056 20.867 93.878 108.304 1.00 38.31 C
ATOM 14 N9 A A1056 20.433 95.272 108.422 1.00 37.66 N
ATOM 15 C8 A A1056 19.317 95.801 109.027 1.00 37.47 C
ATOM 16 N7 A A1056 19.234 97.105 108.934 1.00 35.91 N
ATOM 17 C5 A A1056 20.373 97.459 108.232 1.00 36.21 C
ATOM 18 C6 A A1056 20.878 98.705 107.810 1.00 36.39 C
ATOM 19 N6 A A1056 20.276 99.876 108.054 1.00 32.52 N
ATOM 20 N1 A A1056 22.038 98.709 107.119 1.00 37.30 N
ATOM 21 C2 A A1056 22.639 97.534 106.876 1.00 38.26 C
ATOM 22 N3 A A1056 22.263 96.303 107.224 1.00 37.42 N
ATOM 23 C4 A A1056 21.114 96.339 107.907 1.00 37.03 C
ATOM 24 P A A1057 22.496 92.021 112.520 1.00 39.03 P
ATOM 25 OP1 A A1057 23.005 90.724 113.001 1.00 37.82 O
ATOM 26 OP2 A A1057 21.519 92.768 113.333 1.00 38.64 O
ATOM 27 O5' A A1057 23.701 93.016 112.262 1.00 37.00 O
TER

ATOM 1 O3' G B1217 17.432 104.048 108.981 1.00 39.25 O
ATOM 2 P A B1218 16.796 103.975 107.514 1.00 39.81 P
ATOM 3 OP1 A B1218 16.937 105.292 106.828 1.00 39.17 O
ATOM 4 OP2 A B1218 15.467 103.319 107.588 1.00 39.32 O
ATOM 5 O5' A B1218 17.720 102.930 106.770 1.00 37.99 O
ATOM 6 C5' A B1218 17.322 102.410 105.517 1.00 35.41 C
ATOM 7 C4' A B1218 18.508 102.273 104.623 1.00 33.75 C
ATOM 8 O4' A B1218 19.473 101.394 105.250 1.00 33.42 O
ATOM 9 C3' A B1218 18.159 101.597 103.319 1.00 33.28 C
ATOM 10 O3' A B1218 17.657 102.575 102.407 1.00 34.35 O
ATOM 11 C2' A B1218 19.503 101.013 102.923 1.00 32.46 C
ATOM 12 O2' A B1218 20.358 102.029 102.454 1.00 30.86 O
ATOM 13 C1' A B1218 20.034 100.538 104.281 1.00 31.63 C
ATOM 14 N9 A B1218 19.692 99.161 104.656 1.00 32.94 N
ATOM 15 C8 A B1218 18.610 98.724 105.393 1.00 33.35 C
ATOM 16 N7 A B1218 18.586 97.427 105.575 1.00 32.48 N
ATOM 17 C5 A B1218 19.724 96.976 104.916 1.00 32.43 C
ATOM 18 C6 A B1218 20.269 95.690 104.736 1.00 32.32 C
ATOM 19 N6 A B1218 19.726 94.574 105.234 1.00 33.11 N
ATOM 20 N1 A B1218 21.407 95.586 104.018 1.00 31.61 N
ATOM 21 C2 A B1218 21.955 96.700 103.525 1.00 32.80 C
ATOM 22 N3 A B1218 21.542 97.963 103.632 1.00 33.07 N
ATOM 23 C4 A B1218 20.410 98.031 104.344 1.00 32.61 C
ATOM 24 P G B1219 16.395 102.242 101.459 1.00 35.48 P
ATOM 25 OP1 G B1219 15.874 103.557 101.018 1.00 35.10 O
ATOM 26 OP2 G B1219 15.465 101.248 102.044 1.00 35.09 O
ATOM 27 O5' G B1219 17.067 101.547 100.203 1.00 34.03 O
TER

Atoms:
OP1: (17.732,91.708,112.999)
OP2: (17.159,94.185,112.885)
C3': (21.145,92.763,110.378)
C1': (20.867,93.878,108.304)
C5': (18.784,91.808,110.337)
O4': (19.749,93.041,108.502)
C8: (19.317,95.801,109.027)
O2': (22.785,92.497,108.630)
C6: (20.878,98.705,107.810)
C5: (20.373,97.459,108.232)
C4: (21.114,96.339,107.907)
P: (17.321,92.875,112.214)
C4': (20.037,92.106,109.570)
C2': (21.961,93.436,109.285)
C2: (22.639,97.534,106.876)
N1: (22.038,98.709,107.119)
N3: (22.263,96.303,107.224)
N6: (20.276,99.876,108.054)
N7: (19.234,97.105,108.934)
N9: (20.433,95.272,108.422)
O5': (18.338,92.985,111.004)
O3': (21.893,91.747,111.059)
OP1: (16.937,105.292,106.828)
OP2: (15.467,103.319,107.588)
C3': (18.159,101.597,103.319)
C1': (20.034,100.538,104.281)
C5': (17.322,102.410,105.517)
O4': (19.473,101.394,105.250)
C8: (18.610,98.724,105.393)
O2': (20.358,102.029,102.454)
C6: (20.269,95.690,104.736)
C5: (19.724,96.976,104.916)
C4: (20.410,98.031,104.344)
P: (16.796,103.975,107.514)
C4': (18.508,102.273,104.623)
C2': (19.503,101.013,102.923)
C2: (21.955,96.700,103.525)
N1: (21.407,95.586,104.018)
N3: (21.542,97.963,103.632)
N6: (19.726,94.574,105.234)
N7: (18.586,97.427,105.575)
N9: (19.692,99.161,104.656)
O5': (17.720,102.930,106.770)
O3': (17.657,102.575,102.407)
Image (generated by PyMOL):
PyMOL image
show in jmol