ClaRNA

Doublet info:

Details

Nucleotide types: AA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1YJN:0648:0733

Extra

PDB:
ATOM 1 O3' A A 647 31.785 79.217 35.990 1.00 42.31 O
ATOM 2 P A A 648 31.309 77.682 36.072 1.00 43.14 P
ATOM 3 OP1 A A 648 31.106 77.237 34.667 1.00 45.00 O
ATOM 4 OP2 A A 648 30.194 77.568 37.041 1.00 42.08 O
ATOM 5 O5' A A 648 32.583 76.917 36.655 1.00 42.58 O
ATOM 6 C5' A A 648 33.486 76.186 35.799 1.00 40.24 C
ATOM 7 C4' A A 648 34.778 76.949 35.635 1.00 42.44 C
ATOM 8 O4' A A 648 35.300 77.321 36.940 1.00 43.02 O
ATOM 9 C3' A A 648 35.908 76.212 34.914 1.00 43.21 C
ATOM 10 O3' A A 648 36.693 77.119 34.145 1.00 44.37 O
ATOM 11 C2' A A 648 36.773 75.730 36.070 1.00 44.09 C
ATOM 12 O2' A A 648 38.124 75.523 35.698 1.00 44.53 O
ATOM 13 C1' A A 648 36.642 76.904 37.036 1.00 45.59 C
ATOM 14 N9 A A 648 36.947 76.588 38.430 1.00 49.28 N
ATOM 15 C8 A A 648 36.537 75.508 39.164 1.00 50.70 C
ATOM 16 N7 A A 648 37.016 75.484 40.382 1.00 52.85 N
ATOM 17 C5 A A 648 37.793 76.630 40.459 1.00 54.40 C
ATOM 18 C6 A A 648 38.584 77.173 41.492 1.00 56.08 C
ATOM 19 N6 A A 648 38.742 76.590 42.686 1.00 57.90 N
ATOM 20 N1 A A 648 39.221 78.342 41.249 1.00 55.23 N
ATOM 21 C2 A A 648 39.078 78.909 40.049 1.00 54.27 C
ATOM 22 N3 A A 648 38.375 78.492 38.998 1.00 54.48 N
ATOM 23 C4 A A 648 37.748 77.330 39.271 1.00 53.10 C
ATOM 24 P G A 649 36.077 77.803 32.828 1.00 46.51 P
ATOM 25 OP1 G A 649 35.403 76.752 32.019 1.00 47.10 O
ATOM 26 OP2 G A 649 37.157 78.619 32.223 1.00 47.04 O
ATOM 27 O5' G A 649 34.959 78.784 33.394 1.00 43.92 O
TER

ATOM 1 O3' G B 732 36.742 73.552 45.003 1.00 48.84 O
ATOM 2 P A B 733 36.636 73.513 46.600 1.00 46.38 P
ATOM 3 OP1 A B 733 37.806 72.743 47.097 1.00 44.24 O
ATOM 4 OP2 A B 733 35.264 73.107 46.989 1.00 45.41 O
ATOM 5 O5' A B 733 36.833 75.043 47.007 1.00 47.26 O
ATOM 6 C5' A B 733 38.102 75.718 46.805 1.00 45.40 C
ATOM 7 C4' A B 733 37.883 77.122 46.279 1.00 43.28 C
ATOM 8 O4' A B 733 37.406 77.051 44.909 1.00 43.51 O
ATOM 9 C3' A B 733 36.863 77.977 47.033 1.00 43.75 C
ATOM 10 O3' A B 733 37.218 79.357 46.942 1.00 43.55 O
ATOM 11 C2' A B 733 35.615 77.801 46.178 1.00 43.87 C
ATOM 12 O2' A B 733 34.702 78.861 46.352 1.00 43.65 O
ATOM 13 C1' A B 733 36.240 77.829 44.786 1.00 45.36 C
ATOM 14 N9 A B 733 35.443 77.317 43.673 1.00 48.49 N
ATOM 15 C8 A B 733 34.716 76.153 43.597 1.00 50.39 C
ATOM 16 N7 A B 733 34.108 75.982 42.446 1.00 50.48 N
ATOM 17 C5 A B 733 34.458 77.108 41.715 1.00 50.06 C
ATOM 18 C6 A B 733 34.128 77.526 40.420 1.00 49.28 C
ATOM 19 N6 A B 733 33.345 76.827 39.602 1.00 48.64 N
ATOM 20 N1 A B 733 34.632 78.702 39.991 1.00 49.51 N
ATOM 21 C2 A B 733 35.415 79.403 40.820 1.00 49.95 C
ATOM 22 N3 A B 733 35.798 79.116 42.062 1.00 49.97 N
ATOM 23 C4 A B 733 35.278 77.940 42.457 1.00 49.83 C
ATOM 24 P G B 734 38.278 80.001 47.967 1.00 43.36 P
ATOM 25 OP1 G B 734 39.167 78.920 48.455 1.00 42.10 O
ATOM 26 OP2 G B 734 37.537 80.836 48.949 1.00 41.59 O
ATOM 27 O5' G B 734 39.142 80.956 47.024 1.00 41.27 O
TER

Atoms:
OP1: (31.106,77.237,34.667)
OP2: (30.194,77.568,37.041)
C3': (35.908,76.212,34.914)
C1': (36.642,76.904,37.036)
C5': (33.486,76.186,35.799)
O4': (35.300,77.321,36.940)
C8: (36.537,75.508,39.164)
O2': (38.124,75.523,35.698)
C6: (38.584,77.173,41.492)
C5: (37.793,76.630,40.459)
C4: (37.748,77.330,39.271)
P: (31.309,77.682,36.072)
C4': (34.778,76.949,35.635)
C2': (36.773,75.730,36.070)
C2: (39.078,78.909,40.049)
N1: (39.221,78.342,41.249)
N3: (38.375,78.492,38.998)
N6: (38.742,76.590,42.686)
N7: (37.016,75.484,40.382)
N9: (36.947,76.588,38.430)
O5': (32.583,76.917,36.655)
O3': (36.693,77.119,34.145)
OP1: (37.806,72.743,47.097)
OP2: (35.264,73.107,46.989)
C3': (36.863,77.977,47.033)
C1': (36.240,77.829,44.786)
C5': (38.102,75.718,46.805)
O4': (37.406,77.051,44.909)
C8: (34.716,76.153,43.597)
O2': (34.702,78.861,46.352)
C6: (34.128,77.526,40.420)
C5: (34.458,77.108,41.715)
C4: (35.278,77.940,42.457)
P: (36.636,73.513,46.600)
C4': (37.883,77.122,46.279)
C2': (35.615,77.801,46.178)
C2: (35.415,79.403,40.820)
N1: (34.632,78.702,39.991)
N3: (35.798,79.116,42.062)
N6: (33.345,76.827,39.602)
N7: (34.108,75.982,42.446)
N9: (35.443,77.317,43.673)
O5': (36.833,75.043,47.007)
O3': (37.218,79.357,46.942)
Image (generated by PyMOL):
PyMOL image
show in jmol