Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3DW4:A10:A18
Extra
PDB:
ATOM 1 O3' U A 9 11.284 -2.687 -1.107 1.00 10.88 O
ATOM 2 P A A 10 12.486 -3.087 -2.079 1.00 11.06 P
ATOM 3 OP1 A A 10 12.164 -4.430 -2.615 1.00 11.96 O
ATOM 4 OP2 A A 10 13.765 -2.858 -1.376 1.00 11.62 O
ATOM 5 O5' A A 10 12.413 -2.010 -3.254 1.00 10.29 O
ATOM 6 C5' A A 10 11.332 -2.058 -4.164 1.00 10.44 C
ATOM 7 C4' A A 10 11.446 -0.916 -5.149 1.00 9.71 C
ATOM 8 O4' A A 10 11.303 0.340 -4.447 1.00 9.65 O
ATOM 9 C3' A A 10 12.795 -0.776 -5.838 1.00 9.79 C
ATOM 10 O3' A A 10 12.926 -1.697 -6.905 1.00 10.59 O
ATOM 11 C2' A A 10 12.689 0.649 -6.355 1.00 9.92 C
ATOM 12 O2' A A 10 11.817 0.744 -7.463 1.00 11.53 O
ATOM 13 C1' A A 10 12.047 1.320 -5.150 1.00 9.06 C
ATOM 14 N9 A A 10 12.984 1.969 -4.239 1.00 8.39 N
ATOM 15 C8 A A 10 13.284 1.634 -2.948 1.00 8.62 C
ATOM 16 N7 A A 10 14.155 2.442 -2.391 1.00 8.76 N
ATOM 17 C5 A A 10 14.437 3.367 -3.383 1.00 8.09 C
ATOM 18 C6 A A 10 15.281 4.492 -3.432 1.00 8.46 C
ATOM 19 N6 A A 10 16.034 4.894 -2.406 1.00 9.18 N
ATOM 20 N1 A A 10 15.320 5.193 -4.583 1.00 8.93 N
ATOM 21 C2 A A 10 14.566 4.795 -5.611 1.00 8.77 C
ATOM 22 N3 A A 10 13.737 3.760 -5.685 1.00 8.50 N
ATOM 23 C4 A A 10 13.722 3.086 -4.526 1.00 8.02 C
ATOM 24 P C A 11 14.326 -2.432 -7.139 1.00 11.19 P
ATOM 25 OP1 C A 11 14.221 -3.161 -8.424 1.00 12.67 O
ATOM 26 OP2 C A 11 14.691 -3.168 -5.912 1.00 12.22 O
ATOM 27 O5' C A 11 15.367 -1.225 -7.274 1.00 9.85 O
TER
ATOM 1 O3' G B 17 16.739 9.759 0.310 1.00 8.78 O
ATOM 2 P A B 18 15.458 10.076 1.224 1.00 9.05 P
ATOM 3 OP1 A B 18 15.097 11.494 1.016 1.00 10.25 O
ATOM 4 OP2 A B 18 15.720 9.577 2.592 1.00 10.04 O
ATOM 5 O5' A B 18 14.346 9.110 0.596 1.00 9.01 O
ATOM 6 C5' A B 18 13.238 9.596 -0.160 1.00 9.35 C
ATOM 7 C4' A B 18 13.576 9.862 -1.615 1.00 9.22 C
ATOM 8 O4' A B 18 14.263 8.730 -2.214 1.00 9.45 O
ATOM 9 C3' A B 18 12.348 10.037 -2.493 1.00 9.58 C
ATOM 10 O3' A B 18 11.817 11.350 -2.374 1.00 9.52 O
ATOM 11 C2' A B 18 12.963 9.762 -3.857 1.00 10.09 C
ATOM 12 O2' A B 18 13.819 10.802 -4.281 1.00 11.34 O
ATOM 13 C1' A B 18 13.757 8.506 -3.520 1.00 9.40 C
ATOM 14 N9 A B 18 12.879 7.340 -3.490 1.00 9.08 N
ATOM 15 C8 A B 18 12.511 6.621 -2.386 1.00 9.15 C
ATOM 16 N7 A B 18 11.690 5.634 -2.651 1.00 9.31 N
ATOM 17 C5 A B 18 11.502 5.707 -4.020 1.00 9.27 C
ATOM 18 C6 A B 18 10.733 4.926 -4.904 1.00 9.71 C
ATOM 19 N6 A B 18 9.991 3.887 -4.502 1.00 10.71 N
ATOM 20 N1 A B 18 10.765 5.259 -6.212 1.00 10.79 N
ATOM 21 C2 A B 18 11.514 6.302 -6.593 1.00 10.93 C
ATOM 22 N3 A B 18 12.274 7.111 -5.852 1.00 10.04 N
ATOM 23 C4 A B 18 12.224 6.756 -4.557 1.00 9.48 C
ATOM 24 P C B 19 10.241 11.586 -2.556 1.00 9.88 P
ATOM 25 OP1 C B 19 9.948 12.944 -2.046 1.00 11.42 O
ATOM 26 OP2 C B 19 9.514 10.423 -1.999 1.00 9.75 O
ATOM 27 O5' C B 19 10.043 11.546 -4.139 1.00 10.14 O
TER
ATOM 2 P A A 10 12.486 -3.087 -2.079 1.00 11.06 P
ATOM 3 OP1 A A 10 12.164 -4.430 -2.615 1.00 11.96 O
ATOM 4 OP2 A A 10 13.765 -2.858 -1.376 1.00 11.62 O
ATOM 5 O5' A A 10 12.413 -2.010 -3.254 1.00 10.29 O
ATOM 6 C5' A A 10 11.332 -2.058 -4.164 1.00 10.44 C
ATOM 7 C4' A A 10 11.446 -0.916 -5.149 1.00 9.71 C
ATOM 8 O4' A A 10 11.303 0.340 -4.447 1.00 9.65 O
ATOM 9 C3' A A 10 12.795 -0.776 -5.838 1.00 9.79 C
ATOM 10 O3' A A 10 12.926 -1.697 -6.905 1.00 10.59 O
ATOM 11 C2' A A 10 12.689 0.649 -6.355 1.00 9.92 C
ATOM 12 O2' A A 10 11.817 0.744 -7.463 1.00 11.53 O
ATOM 13 C1' A A 10 12.047 1.320 -5.150 1.00 9.06 C
ATOM 14 N9 A A 10 12.984 1.969 -4.239 1.00 8.39 N
ATOM 15 C8 A A 10 13.284 1.634 -2.948 1.00 8.62 C
ATOM 16 N7 A A 10 14.155 2.442 -2.391 1.00 8.76 N
ATOM 17 C5 A A 10 14.437 3.367 -3.383 1.00 8.09 C
ATOM 18 C6 A A 10 15.281 4.492 -3.432 1.00 8.46 C
ATOM 19 N6 A A 10 16.034 4.894 -2.406 1.00 9.18 N
ATOM 20 N1 A A 10 15.320 5.193 -4.583 1.00 8.93 N
ATOM 21 C2 A A 10 14.566 4.795 -5.611 1.00 8.77 C
ATOM 22 N3 A A 10 13.737 3.760 -5.685 1.00 8.50 N
ATOM 23 C4 A A 10 13.722 3.086 -4.526 1.00 8.02 C
ATOM 24 P C A 11 14.326 -2.432 -7.139 1.00 11.19 P
ATOM 25 OP1 C A 11 14.221 -3.161 -8.424 1.00 12.67 O
ATOM 26 OP2 C A 11 14.691 -3.168 -5.912 1.00 12.22 O
ATOM 27 O5' C A 11 15.367 -1.225 -7.274 1.00 9.85 O
TER
ATOM 1 O3' G B 17 16.739 9.759 0.310 1.00 8.78 O
ATOM 2 P A B 18 15.458 10.076 1.224 1.00 9.05 P
ATOM 3 OP1 A B 18 15.097 11.494 1.016 1.00 10.25 O
ATOM 4 OP2 A B 18 15.720 9.577 2.592 1.00 10.04 O
ATOM 5 O5' A B 18 14.346 9.110 0.596 1.00 9.01 O
ATOM 6 C5' A B 18 13.238 9.596 -0.160 1.00 9.35 C
ATOM 7 C4' A B 18 13.576 9.862 -1.615 1.00 9.22 C
ATOM 8 O4' A B 18 14.263 8.730 -2.214 1.00 9.45 O
ATOM 9 C3' A B 18 12.348 10.037 -2.493 1.00 9.58 C
ATOM 10 O3' A B 18 11.817 11.350 -2.374 1.00 9.52 O
ATOM 11 C2' A B 18 12.963 9.762 -3.857 1.00 10.09 C
ATOM 12 O2' A B 18 13.819 10.802 -4.281 1.00 11.34 O
ATOM 13 C1' A B 18 13.757 8.506 -3.520 1.00 9.40 C
ATOM 14 N9 A B 18 12.879 7.340 -3.490 1.00 9.08 N
ATOM 15 C8 A B 18 12.511 6.621 -2.386 1.00 9.15 C
ATOM 16 N7 A B 18 11.690 5.634 -2.651 1.00 9.31 N
ATOM 17 C5 A B 18 11.502 5.707 -4.020 1.00 9.27 C
ATOM 18 C6 A B 18 10.733 4.926 -4.904 1.00 9.71 C
ATOM 19 N6 A B 18 9.991 3.887 -4.502 1.00 10.71 N
ATOM 20 N1 A B 18 10.765 5.259 -6.212 1.00 10.79 N
ATOM 21 C2 A B 18 11.514 6.302 -6.593 1.00 10.93 C
ATOM 22 N3 A B 18 12.274 7.111 -5.852 1.00 10.04 N
ATOM 23 C4 A B 18 12.224 6.756 -4.557 1.00 9.48 C
ATOM 24 P C B 19 10.241 11.586 -2.556 1.00 9.88 P
ATOM 25 OP1 C B 19 9.948 12.944 -2.046 1.00 11.42 O
ATOM 26 OP2 C B 19 9.514 10.423 -1.999 1.00 9.75 O
ATOM 27 O5' C B 19 10.043 11.546 -4.139 1.00 10.14 O
TER
Atoms:
OP1: (12.164,-4.430,-2.615)
OP2: (13.765,-2.858,-1.376)
C3': (12.795,-0.776,-5.838)
C1': (12.047,1.320,-5.150)
C5': (11.332,-2.058,-4.164)
O4': (11.303,0.340,-4.447)
C8: (13.284,1.634,-2.948)
O2': (11.817,0.744,-7.463)
C6: (15.281,4.492,-3.432)
C5: (14.437,3.367,-3.383)
C4: (13.722,3.086,-4.526)
P: (12.486,-3.087,-2.079)
C4': (11.446,-0.916,-5.149)
C2': (12.689,0.649,-6.355)
C2: (14.566,4.795,-5.611)
N1: (15.320,5.193,-4.583)
N3: (13.737,3.760,-5.685)
N6: (16.034,4.894,-2.406)
N7: (14.155,2.442,-2.391)
N9: (12.984,1.969,-4.239)
O5': (12.413,-2.010,-3.254)
O3': (12.926,-1.697,-6.905)
OP2: (13.765,-2.858,-1.376)
C3': (12.795,-0.776,-5.838)
C1': (12.047,1.320,-5.150)
C5': (11.332,-2.058,-4.164)
O4': (11.303,0.340,-4.447)
C8: (13.284,1.634,-2.948)
O2': (11.817,0.744,-7.463)
C6: (15.281,4.492,-3.432)
C5: (14.437,3.367,-3.383)
C4: (13.722,3.086,-4.526)
P: (12.486,-3.087,-2.079)
C4': (11.446,-0.916,-5.149)
C2': (12.689,0.649,-6.355)
C2: (14.566,4.795,-5.611)
N1: (15.320,5.193,-4.583)
N3: (13.737,3.760,-5.685)
N6: (16.034,4.894,-2.406)
N7: (14.155,2.442,-2.391)
N9: (12.984,1.969,-4.239)
O5': (12.413,-2.010,-3.254)
O3': (12.926,-1.697,-6.905)
OP1: (15.097,11.494,1.016)
OP2: (15.720,9.577,2.592)
C3': (12.348,10.037,-2.493)
C1': (13.757,8.506,-3.520)
C5': (13.238,9.596,-0.160)
O4': (14.263,8.730,-2.214)
C8: (12.511,6.621,-2.386)
O2': (13.819,10.802,-4.281)
C6: (10.733,4.926,-4.904)
C5: (11.502,5.707,-4.020)
C4: (12.224,6.756,-4.557)
P: (15.458,10.076,1.224)
C4': (13.576,9.862,-1.615)
C2': (12.963,9.762,-3.857)
C2: (11.514,6.302,-6.593)
N1: (10.765,5.259,-6.212)
N3: (12.274,7.111,-5.852)
N6: (9.991,3.887,-4.502)
N7: (11.690,5.634,-2.651)
N9: (12.879,7.340,-3.490)
O5': (14.346,9.110,0.596)
O3': (11.817,11.350,-2.374)
OP2: (15.720,9.577,2.592)
C3': (12.348,10.037,-2.493)
C1': (13.757,8.506,-3.520)
C5': (13.238,9.596,-0.160)
O4': (14.263,8.730,-2.214)
C8: (12.511,6.621,-2.386)
O2': (13.819,10.802,-4.281)
C6: (10.733,4.926,-4.904)
C5: (11.502,5.707,-4.020)
C4: (12.224,6.756,-4.557)
P: (15.458,10.076,1.224)
C4': (13.576,9.862,-1.615)
C2': (12.963,9.762,-3.857)
C2: (11.514,6.302,-6.593)
N1: (10.765,5.259,-6.212)
N3: (12.274,7.111,-5.852)
N6: (9.991,3.887,-4.502)
N7: (11.690,5.634,-2.651)
N9: (12.879,7.340,-3.490)
O5': (14.346,9.110,0.596)
O3': (11.817,11.350,-2.374)
Image (generated by PyMOL):