Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02090:02104
Extra
PDB:
ATOM 1 O3' C A2089 119.066 116.876 29.968 1.00 67.77 O
ATOM 2 P A A2090 118.465 118.330 30.247 1.00 68.55 P
ATOM 3 OP1 A A2090 118.576 119.103 28.982 1.00 67.75 O
ATOM 4 OP2 A A2090 119.085 118.854 31.494 1.00 68.26 O
ATOM 5 O5' A A2090 116.919 118.041 30.513 1.00 67.67 O
ATOM 6 C5' A A2090 116.052 117.605 29.442 1.00 64.61 C
ATOM 7 C4' A A2090 115.109 116.521 29.924 1.00 62.52 C
ATOM 8 O4' A A2090 115.871 115.356 30.331 1.00 62.59 O
ATOM 9 C3' A A2090 114.270 116.855 31.142 1.00 60.93 C
ATOM 10 O3' A A2090 113.116 117.599 30.780 1.00 60.54 O
ATOM 11 C2' A A2090 113.928 115.472 31.680 1.00 60.64 C
ATOM 12 O2' A A2090 112.927 114.812 30.934 1.00 58.59 O
ATOM 13 C1' A A2090 115.238 114.730 31.434 1.00 61.12 C
ATOM 14 N9 A A2090 116.170 114.731 32.564 1.00 62.72 N
ATOM 15 C8 A A2090 117.503 115.066 32.540 1.00 62.75 C
ATOM 16 N7 A A2090 118.113 114.894 33.687 1.00 63.39 N
ATOM 17 C5 A A2090 117.114 114.428 34.531 1.00 63.43 C
ATOM 18 C6 A A2090 117.124 114.037 35.880 1.00 62.63 C
ATOM 19 N6 A A2090 118.223 114.020 36.637 1.00 63.92 N
ATOM 20 N1 A A2090 115.956 113.648 36.430 1.00 61.29 N
ATOM 21 C2 A A2090 114.863 113.638 35.665 1.00 61.70 C
ATOM 22 N3 A A2090 114.728 113.961 34.380 1.00 63.47 N
ATOM 23 C4 A A2090 115.906 114.352 33.863 1.00 63.55 C
ATOM 24 P C A2091 112.811 119.001 31.507 1.00 60.95 P
ATOM 25 OP1 C A2091 111.433 119.389 31.108 1.00 59.06 O
ATOM 26 OP2 C A2091 113.941 119.927 31.242 1.00 61.99 O
ATOM 27 O5' C A2091 112.825 118.657 33.063 1.00 58.87 O
TER
ATOM 1 O3' G B2103 121.041 111.409 40.916 1.00 73.77 O
ATOM 2 P A B2104 121.849 110.039 40.740 1.00 75.62 P
ATOM 3 OP1 A B2104 121.390 109.103 41.805 1.00 74.32 O
ATOM 4 OP2 A B2104 123.292 110.377 40.626 1.00 76.62 O
ATOM 5 O5' A B2104 121.355 109.499 39.325 1.00 74.24 O
ATOM 6 C5' A B2104 120.430 108.399 39.225 1.00 70.66 C
ATOM 7 C4' A B2104 119.011 108.915 39.166 1.00 68.73 C
ATOM 8 O4' A B2104 118.952 110.093 38.314 1.00 66.74 O
ATOM 9 C3' A B2104 118.001 107.929 38.593 1.00 68.16 C
ATOM 10 O3' A B2104 116.705 108.190 39.137 1.00 69.15 O
ATOM 11 C2' A B2104 117.994 108.334 37.127 1.00 67.52 C
ATOM 12 O2' A B2104 116.844 107.912 36.434 1.00 70.03 O
ATOM 13 C1' A B2104 118.058 109.856 37.251 1.00 66.37 C
ATOM 14 N9 A B2104 118.566 110.518 36.054 1.00 65.36 N
ATOM 15 C8 A B2104 119.854 110.879 35.764 1.00 65.53 C
ATOM 16 N7 A B2104 120.003 111.382 34.566 1.00 65.84 N
ATOM 17 C5 A B2104 118.722 111.366 34.036 1.00 65.20 C
ATOM 18 C6 A B2104 118.211 111.743 32.785 1.00 65.10 C
ATOM 19 N6 A B2104 118.961 112.196 31.783 1.00 65.56 N
ATOM 20 N1 A B2104 116.884 111.622 32.588 1.00 65.71 N
ATOM 21 C2 A B2104 116.134 111.133 33.580 1.00 65.87 C
ATOM 22 N3 A B2104 116.501 110.723 34.788 1.00 65.70 N
ATOM 23 C4 A B2104 117.824 110.866 34.954 1.00 65.24 C
ATOM 24 P C B2105 115.994 107.122 40.113 1.00 69.17 P
ATOM 25 OP1 C B2105 116.834 105.889 40.184 1.00 69.49 O
ATOM 26 OP2 C B2105 114.577 107.006 39.684 1.00 68.39 O
ATOM 27 O5' C B2105 116.024 107.864 41.528 1.00 66.88 O
TER
ATOM 2 P A A2090 118.465 118.330 30.247 1.00 68.55 P
ATOM 3 OP1 A A2090 118.576 119.103 28.982 1.00 67.75 O
ATOM 4 OP2 A A2090 119.085 118.854 31.494 1.00 68.26 O
ATOM 5 O5' A A2090 116.919 118.041 30.513 1.00 67.67 O
ATOM 6 C5' A A2090 116.052 117.605 29.442 1.00 64.61 C
ATOM 7 C4' A A2090 115.109 116.521 29.924 1.00 62.52 C
ATOM 8 O4' A A2090 115.871 115.356 30.331 1.00 62.59 O
ATOM 9 C3' A A2090 114.270 116.855 31.142 1.00 60.93 C
ATOM 10 O3' A A2090 113.116 117.599 30.780 1.00 60.54 O
ATOM 11 C2' A A2090 113.928 115.472 31.680 1.00 60.64 C
ATOM 12 O2' A A2090 112.927 114.812 30.934 1.00 58.59 O
ATOM 13 C1' A A2090 115.238 114.730 31.434 1.00 61.12 C
ATOM 14 N9 A A2090 116.170 114.731 32.564 1.00 62.72 N
ATOM 15 C8 A A2090 117.503 115.066 32.540 1.00 62.75 C
ATOM 16 N7 A A2090 118.113 114.894 33.687 1.00 63.39 N
ATOM 17 C5 A A2090 117.114 114.428 34.531 1.00 63.43 C
ATOM 18 C6 A A2090 117.124 114.037 35.880 1.00 62.63 C
ATOM 19 N6 A A2090 118.223 114.020 36.637 1.00 63.92 N
ATOM 20 N1 A A2090 115.956 113.648 36.430 1.00 61.29 N
ATOM 21 C2 A A2090 114.863 113.638 35.665 1.00 61.70 C
ATOM 22 N3 A A2090 114.728 113.961 34.380 1.00 63.47 N
ATOM 23 C4 A A2090 115.906 114.352 33.863 1.00 63.55 C
ATOM 24 P C A2091 112.811 119.001 31.507 1.00 60.95 P
ATOM 25 OP1 C A2091 111.433 119.389 31.108 1.00 59.06 O
ATOM 26 OP2 C A2091 113.941 119.927 31.242 1.00 61.99 O
ATOM 27 O5' C A2091 112.825 118.657 33.063 1.00 58.87 O
TER
ATOM 1 O3' G B2103 121.041 111.409 40.916 1.00 73.77 O
ATOM 2 P A B2104 121.849 110.039 40.740 1.00 75.62 P
ATOM 3 OP1 A B2104 121.390 109.103 41.805 1.00 74.32 O
ATOM 4 OP2 A B2104 123.292 110.377 40.626 1.00 76.62 O
ATOM 5 O5' A B2104 121.355 109.499 39.325 1.00 74.24 O
ATOM 6 C5' A B2104 120.430 108.399 39.225 1.00 70.66 C
ATOM 7 C4' A B2104 119.011 108.915 39.166 1.00 68.73 C
ATOM 8 O4' A B2104 118.952 110.093 38.314 1.00 66.74 O
ATOM 9 C3' A B2104 118.001 107.929 38.593 1.00 68.16 C
ATOM 10 O3' A B2104 116.705 108.190 39.137 1.00 69.15 O
ATOM 11 C2' A B2104 117.994 108.334 37.127 1.00 67.52 C
ATOM 12 O2' A B2104 116.844 107.912 36.434 1.00 70.03 O
ATOM 13 C1' A B2104 118.058 109.856 37.251 1.00 66.37 C
ATOM 14 N9 A B2104 118.566 110.518 36.054 1.00 65.36 N
ATOM 15 C8 A B2104 119.854 110.879 35.764 1.00 65.53 C
ATOM 16 N7 A B2104 120.003 111.382 34.566 1.00 65.84 N
ATOM 17 C5 A B2104 118.722 111.366 34.036 1.00 65.20 C
ATOM 18 C6 A B2104 118.211 111.743 32.785 1.00 65.10 C
ATOM 19 N6 A B2104 118.961 112.196 31.783 1.00 65.56 N
ATOM 20 N1 A B2104 116.884 111.622 32.588 1.00 65.71 N
ATOM 21 C2 A B2104 116.134 111.133 33.580 1.00 65.87 C
ATOM 22 N3 A B2104 116.501 110.723 34.788 1.00 65.70 N
ATOM 23 C4 A B2104 117.824 110.866 34.954 1.00 65.24 C
ATOM 24 P C B2105 115.994 107.122 40.113 1.00 69.17 P
ATOM 25 OP1 C B2105 116.834 105.889 40.184 1.00 69.49 O
ATOM 26 OP2 C B2105 114.577 107.006 39.684 1.00 68.39 O
ATOM 27 O5' C B2105 116.024 107.864 41.528 1.00 66.88 O
TER
Atoms:
OP1: (118.576,119.103,28.982)
OP2: (119.085,118.854,31.494)
C3': (114.270,116.855,31.142)
C1': (115.238,114.730,31.434)
C5': (116.052,117.605,29.442)
O4': (115.871,115.356,30.331)
C8: (117.503,115.066,32.540)
O2': (112.927,114.812,30.934)
C6: (117.124,114.037,35.880)
C5: (117.114,114.428,34.531)
C4: (115.906,114.352,33.863)
P: (118.465,118.330,30.247)
C4': (115.109,116.521,29.924)
C2': (113.928,115.472,31.680)
C2: (114.863,113.638,35.665)
N1: (115.956,113.648,36.430)
N3: (114.728,113.961,34.380)
N6: (118.223,114.020,36.637)
N7: (118.113,114.894,33.687)
N9: (116.170,114.731,32.564)
O5': (116.919,118.041,30.513)
O3': (113.116,117.599,30.780)
OP2: (119.085,118.854,31.494)
C3': (114.270,116.855,31.142)
C1': (115.238,114.730,31.434)
C5': (116.052,117.605,29.442)
O4': (115.871,115.356,30.331)
C8: (117.503,115.066,32.540)
O2': (112.927,114.812,30.934)
C6: (117.124,114.037,35.880)
C5: (117.114,114.428,34.531)
C4: (115.906,114.352,33.863)
P: (118.465,118.330,30.247)
C4': (115.109,116.521,29.924)
C2': (113.928,115.472,31.680)
C2: (114.863,113.638,35.665)
N1: (115.956,113.648,36.430)
N3: (114.728,113.961,34.380)
N6: (118.223,114.020,36.637)
N7: (118.113,114.894,33.687)
N9: (116.170,114.731,32.564)
O5': (116.919,118.041,30.513)
O3': (113.116,117.599,30.780)
OP1: (121.390,109.103,41.805)
OP2: (123.292,110.377,40.626)
C3': (118.001,107.929,38.593)
C1': (118.058,109.856,37.251)
C5': (120.430,108.399,39.225)
O4': (118.952,110.093,38.314)
C8: (119.854,110.879,35.764)
O2': (116.844,107.912,36.434)
C6: (118.211,111.743,32.785)
C5: (118.722,111.366,34.036)
C4: (117.824,110.866,34.954)
P: (121.849,110.039,40.740)
C4': (119.011,108.915,39.166)
C2': (117.994,108.334,37.127)
C2: (116.134,111.133,33.580)
N1: (116.884,111.622,32.588)
N3: (116.501,110.723,34.788)
N6: (118.961,112.196,31.783)
N7: (120.003,111.382,34.566)
N9: (118.566,110.518,36.054)
O5': (121.355,109.499,39.325)
O3': (116.705,108.190,39.137)
OP2: (123.292,110.377,40.626)
C3': (118.001,107.929,38.593)
C1': (118.058,109.856,37.251)
C5': (120.430,108.399,39.225)
O4': (118.952,110.093,38.314)
C8: (119.854,110.879,35.764)
O2': (116.844,107.912,36.434)
C6: (118.211,111.743,32.785)
C5: (118.722,111.366,34.036)
C4: (117.824,110.866,34.954)
P: (121.849,110.039,40.740)
C4': (119.011,108.915,39.166)
C2': (117.994,108.334,37.127)
C2: (116.134,111.133,33.580)
N1: (116.884,111.622,32.588)
N3: (116.501,110.723,34.788)
N6: (118.961,112.196,31.783)
N7: (120.003,111.382,34.566)
N9: (118.566,110.518,36.054)
O5': (121.355,109.499,39.325)
O3': (116.705,108.190,39.137)
Image (generated by PyMOL):