Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1CVJ:O4:R4
Extra
PDB:
ATOM 1 O3' A A 3 12.374 141.522 -9.811 1.00 41.28 O
ATOM 2 P A A 4 13.496 141.601 -10.944 1.00 52.20 P
ATOM 3 OP1 A A 4 14.170 142.926 -10.833 1.00 45.72 O
ATOM 4 OP2 A A 4 12.867 141.195 -12.233 1.00 47.56 O
ATOM 5 O5' A A 4 14.543 140.471 -10.531 1.00 48.97 O
ATOM 6 C5' A A 4 14.196 139.089 -10.599 1.00 43.25 C
ATOM 7 C4' A A 4 15.275 138.252 -9.956 1.00 42.52 C
ATOM 8 O4' A A 4 16.511 138.454 -10.696 1.00 40.18 O
ATOM 9 C3' A A 4 15.588 138.630 -8.511 1.00 39.46 C
ATOM 10 O3' A A 4 15.974 137.486 -7.761 1.00 34.05 O
ATOM 11 C2' A A 4 16.739 139.613 -8.674 1.00 37.19 C
ATOM 12 O2' A A 4 17.561 139.732 -7.534 1.00 37.82 O
ATOM 13 C1' A A 4 17.499 138.980 -9.835 1.00 39.37 C
ATOM 14 N9 A A 4 18.287 139.953 -10.581 1.00 41.63 N
ATOM 15 C8 A A 4 17.848 140.948 -11.414 1.00 39.46 C
ATOM 16 N7 A A 4 18.812 141.691 -11.900 1.00 39.00 N
ATOM 17 C5 A A 4 19.963 141.145 -11.351 1.00 41.06 C
ATOM 18 C6 A A 4 21.321 141.486 -11.461 1.00 41.84 C
ATOM 19 N6 A A 4 21.779 142.513 -12.177 1.00 49.12 N
ATOM 20 N1 A A 4 22.210 140.726 -10.795 1.00 43.79 N
ATOM 21 C2 A A 4 21.759 139.699 -10.068 1.00 41.36 C
ATOM 22 N3 A A 4 20.513 139.285 -9.878 1.00 39.81 N
ATOM 23 C4 A A 4 19.652 140.061 -10.553 1.00 42.42 C
ATOM 24 P A A 5 15.177 137.113 -6.410 1.00 43.07 P
ATOM 25 OP1 A A 5 14.146 136.102 -6.766 1.00 40.12 O
ATOM 26 OP2 A A 5 14.762 138.350 -5.703 1.00 37.20 O
ATOM 27 O5' A A 5 16.271 136.363 -5.523 1.00 47.66 O
TER
ATOM 1 O3' A B 3 24.435 141.859 -17.437 1.00 41.48 O
ATOM 2 P A B 4 23.269 142.474 -16.510 1.00 47.89 P
ATOM 3 OP1 A B 4 22.035 142.635 -17.315 1.00 47.21 O
ATOM 4 OP2 A B 4 23.828 143.640 -15.775 1.00 53.07 O
ATOM 5 O5' A B 4 23.009 141.345 -15.414 1.00 48.37 O
ATOM 6 C5' A B 4 24.035 140.971 -14.499 1.00 43.78 C
ATOM 7 C4' A B 4 23.820 139.560 -14.011 1.00 44.59 C
ATOM 8 O4' A B 4 22.524 139.485 -13.365 1.00 44.64 O
ATOM 9 C3' A B 4 23.826 138.471 -15.074 1.00 43.40 C
ATOM 10 O3' A B 4 24.341 137.273 -14.517 1.00 44.14 O
ATOM 11 C2' A B 4 22.347 138.286 -15.380 1.00 43.94 C
ATOM 12 O2' A B 4 22.030 136.983 -15.829 1.00 49.14 O
ATOM 13 C1' A B 4 21.728 138.515 -14.007 1.00 43.90 C
ATOM 14 N9 A B 4 20.370 139.038 -14.103 1.00 45.35 N
ATOM 15 C8 A B 4 19.959 140.257 -14.579 1.00 42.56 C
ATOM 16 N7 A B 4 18.659 140.415 -14.567 1.00 40.28 N
ATOM 17 C5 A B 4 18.185 139.222 -14.049 1.00 40.28 C
ATOM 18 C6 A B 4 16.890 138.750 -13.803 1.00 43.02 C
ATOM 19 N6 A B 4 15.788 139.454 -14.048 1.00 36.97 N
ATOM 20 N1 A B 4 16.762 137.507 -13.284 1.00 44.92 N
ATOM 21 C2 A B 4 17.874 136.799 -13.029 1.00 40.54 C
ATOM 22 N3 A B 4 19.145 137.135 -13.220 1.00 39.54 N
ATOM 23 C4 A B 4 19.230 138.372 -13.742 1.00 43.11 C
ATOM 24 P A B 5 25.502 136.474 -15.277 1.00 44.67 P
ATOM 25 OP1 A B 5 26.787 136.931 -14.720 1.00 48.39 O
ATOM 26 OP2 A B 5 25.275 136.570 -16.740 1.00 42.29 O
ATOM 27 O5' A B 5 25.266 134.971 -14.813 1.00 45.32 O
TER
ATOM 2 P A A 4 13.496 141.601 -10.944 1.00 52.20 P
ATOM 3 OP1 A A 4 14.170 142.926 -10.833 1.00 45.72 O
ATOM 4 OP2 A A 4 12.867 141.195 -12.233 1.00 47.56 O
ATOM 5 O5' A A 4 14.543 140.471 -10.531 1.00 48.97 O
ATOM 6 C5' A A 4 14.196 139.089 -10.599 1.00 43.25 C
ATOM 7 C4' A A 4 15.275 138.252 -9.956 1.00 42.52 C
ATOM 8 O4' A A 4 16.511 138.454 -10.696 1.00 40.18 O
ATOM 9 C3' A A 4 15.588 138.630 -8.511 1.00 39.46 C
ATOM 10 O3' A A 4 15.974 137.486 -7.761 1.00 34.05 O
ATOM 11 C2' A A 4 16.739 139.613 -8.674 1.00 37.19 C
ATOM 12 O2' A A 4 17.561 139.732 -7.534 1.00 37.82 O
ATOM 13 C1' A A 4 17.499 138.980 -9.835 1.00 39.37 C
ATOM 14 N9 A A 4 18.287 139.953 -10.581 1.00 41.63 N
ATOM 15 C8 A A 4 17.848 140.948 -11.414 1.00 39.46 C
ATOM 16 N7 A A 4 18.812 141.691 -11.900 1.00 39.00 N
ATOM 17 C5 A A 4 19.963 141.145 -11.351 1.00 41.06 C
ATOM 18 C6 A A 4 21.321 141.486 -11.461 1.00 41.84 C
ATOM 19 N6 A A 4 21.779 142.513 -12.177 1.00 49.12 N
ATOM 20 N1 A A 4 22.210 140.726 -10.795 1.00 43.79 N
ATOM 21 C2 A A 4 21.759 139.699 -10.068 1.00 41.36 C
ATOM 22 N3 A A 4 20.513 139.285 -9.878 1.00 39.81 N
ATOM 23 C4 A A 4 19.652 140.061 -10.553 1.00 42.42 C
ATOM 24 P A A 5 15.177 137.113 -6.410 1.00 43.07 P
ATOM 25 OP1 A A 5 14.146 136.102 -6.766 1.00 40.12 O
ATOM 26 OP2 A A 5 14.762 138.350 -5.703 1.00 37.20 O
ATOM 27 O5' A A 5 16.271 136.363 -5.523 1.00 47.66 O
TER
ATOM 1 O3' A B 3 24.435 141.859 -17.437 1.00 41.48 O
ATOM 2 P A B 4 23.269 142.474 -16.510 1.00 47.89 P
ATOM 3 OP1 A B 4 22.035 142.635 -17.315 1.00 47.21 O
ATOM 4 OP2 A B 4 23.828 143.640 -15.775 1.00 53.07 O
ATOM 5 O5' A B 4 23.009 141.345 -15.414 1.00 48.37 O
ATOM 6 C5' A B 4 24.035 140.971 -14.499 1.00 43.78 C
ATOM 7 C4' A B 4 23.820 139.560 -14.011 1.00 44.59 C
ATOM 8 O4' A B 4 22.524 139.485 -13.365 1.00 44.64 O
ATOM 9 C3' A B 4 23.826 138.471 -15.074 1.00 43.40 C
ATOM 10 O3' A B 4 24.341 137.273 -14.517 1.00 44.14 O
ATOM 11 C2' A B 4 22.347 138.286 -15.380 1.00 43.94 C
ATOM 12 O2' A B 4 22.030 136.983 -15.829 1.00 49.14 O
ATOM 13 C1' A B 4 21.728 138.515 -14.007 1.00 43.90 C
ATOM 14 N9 A B 4 20.370 139.038 -14.103 1.00 45.35 N
ATOM 15 C8 A B 4 19.959 140.257 -14.579 1.00 42.56 C
ATOM 16 N7 A B 4 18.659 140.415 -14.567 1.00 40.28 N
ATOM 17 C5 A B 4 18.185 139.222 -14.049 1.00 40.28 C
ATOM 18 C6 A B 4 16.890 138.750 -13.803 1.00 43.02 C
ATOM 19 N6 A B 4 15.788 139.454 -14.048 1.00 36.97 N
ATOM 20 N1 A B 4 16.762 137.507 -13.284 1.00 44.92 N
ATOM 21 C2 A B 4 17.874 136.799 -13.029 1.00 40.54 C
ATOM 22 N3 A B 4 19.145 137.135 -13.220 1.00 39.54 N
ATOM 23 C4 A B 4 19.230 138.372 -13.742 1.00 43.11 C
ATOM 24 P A B 5 25.502 136.474 -15.277 1.00 44.67 P
ATOM 25 OP1 A B 5 26.787 136.931 -14.720 1.00 48.39 O
ATOM 26 OP2 A B 5 25.275 136.570 -16.740 1.00 42.29 O
ATOM 27 O5' A B 5 25.266 134.971 -14.813 1.00 45.32 O
TER
Atoms:
OP1: (14.170,142.926,-10.833)
OP2: (12.867,141.195,-12.233)
C3': (15.588,138.630,-8.511)
C1': (17.499,138.980,-9.835)
C5': (14.196,139.089,-10.599)
O4': (16.511,138.454,-10.696)
C8: (17.848,140.948,-11.414)
O2': (17.561,139.732,-7.534)
C6: (21.321,141.486,-11.461)
C5: (19.963,141.145,-11.351)
C4: (19.652,140.061,-10.553)
P: (13.496,141.601,-10.944)
C4': (15.275,138.252,-9.956)
C2': (16.739,139.613,-8.674)
C2: (21.759,139.699,-10.068)
N1: (22.210,140.726,-10.795)
N3: (20.513,139.285,-9.878)
N6: (21.779,142.513,-12.177)
N7: (18.812,141.691,-11.900)
N9: (18.287,139.953,-10.581)
O5': (14.543,140.471,-10.531)
O3': (15.974,137.486,-7.761)
OP2: (12.867,141.195,-12.233)
C3': (15.588,138.630,-8.511)
C1': (17.499,138.980,-9.835)
C5': (14.196,139.089,-10.599)
O4': (16.511,138.454,-10.696)
C8: (17.848,140.948,-11.414)
O2': (17.561,139.732,-7.534)
C6: (21.321,141.486,-11.461)
C5: (19.963,141.145,-11.351)
C4: (19.652,140.061,-10.553)
P: (13.496,141.601,-10.944)
C4': (15.275,138.252,-9.956)
C2': (16.739,139.613,-8.674)
C2: (21.759,139.699,-10.068)
N1: (22.210,140.726,-10.795)
N3: (20.513,139.285,-9.878)
N6: (21.779,142.513,-12.177)
N7: (18.812,141.691,-11.900)
N9: (18.287,139.953,-10.581)
O5': (14.543,140.471,-10.531)
O3': (15.974,137.486,-7.761)
OP1: (22.035,142.635,-17.315)
OP2: (23.828,143.640,-15.775)
C3': (23.826,138.471,-15.074)
C1': (21.728,138.515,-14.007)
C5': (24.035,140.971,-14.499)
O4': (22.524,139.485,-13.365)
C8: (19.959,140.257,-14.579)
O2': (22.030,136.983,-15.829)
C6: (16.890,138.750,-13.803)
C5: (18.185,139.222,-14.049)
C4: (19.230,138.372,-13.742)
P: (23.269,142.474,-16.510)
C4': (23.820,139.560,-14.011)
C2': (22.347,138.286,-15.380)
C2: (17.874,136.799,-13.029)
N1: (16.762,137.507,-13.284)
N3: (19.145,137.135,-13.220)
N6: (15.788,139.454,-14.048)
N7: (18.659,140.415,-14.567)
N9: (20.370,139.038,-14.103)
O5': (23.009,141.345,-15.414)
O3': (24.341,137.273,-14.517)
OP2: (23.828,143.640,-15.775)
C3': (23.826,138.471,-15.074)
C1': (21.728,138.515,-14.007)
C5': (24.035,140.971,-14.499)
O4': (22.524,139.485,-13.365)
C8: (19.959,140.257,-14.579)
O2': (22.030,136.983,-15.829)
C6: (16.890,138.750,-13.803)
C5: (18.185,139.222,-14.049)
C4: (19.230,138.372,-13.742)
P: (23.269,142.474,-16.510)
C4': (23.820,139.560,-14.011)
C2': (22.347,138.286,-15.380)
C2: (17.874,136.799,-13.029)
N1: (16.762,137.507,-13.284)
N3: (19.145,137.135,-13.220)
N6: (15.788,139.454,-14.048)
N7: (18.659,140.415,-14.567)
N9: (20.370,139.038,-14.103)
O5': (23.009,141.345,-15.414)
O3': (24.341,137.273,-14.517)
Image (generated by PyMOL):