Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A53:A90
Extra
PDB:
ATOM 1 O3' U A 52 -6.261 46.679 3.677 1.00 25.98 O
ATOM 2 P C A 53 -7.138 45.355 3.906 1.00 24.71 P
ATOM 3 OP1 C A 53 -7.344 44.748 2.564 1.00 28.92 O
ATOM 4 OP2 C A 53 -8.272 45.679 4.793 1.00 23.07 O
ATOM 5 O5' C A 53 -6.167 44.408 4.713 1.00 23.60 O
ATOM 6 C5' C A 53 -4.991 43.875 4.134 1.00 23.66 C
ATOM 7 C4' C A 53 -4.279 43.009 5.138 1.00 24.06 C
ATOM 8 O4' C A 53 -3.817 43.827 6.243 1.00 20.67 O
ATOM 9 C3' C A 53 -5.142 41.960 5.822 1.00 22.11 C
ATOM 10 O3' C A 53 -5.392 40.814 5.019 1.00 25.85 O
ATOM 11 C2' C A 53 -4.364 41.671 7.105 1.00 23.51 C
ATOM 12 O2' C A 53 -3.251 40.824 6.854 1.00 24.55 O
ATOM 13 C1' C A 53 -3.841 43.068 7.437 1.00 24.33 C
ATOM 14 N1 C A 53 -4.704 43.726 8.431 1.00 21.99 N
ATOM 15 C2 C A 53 -4.494 43.381 9.763 1.00 23.39 C
ATOM 16 O2 C A 53 -3.609 42.552 10.025 1.00 21.37 O
ATOM 17 N3 C A 53 -5.263 43.952 10.717 1.00 26.15 N
ATOM 18 C4 C A 53 -6.209 44.832 10.381 1.00 25.87 C
ATOM 19 N4 C A 53 -6.928 45.374 11.373 1.00 21.97 N
ATOM 20 C5 C A 53 -6.445 45.196 9.018 1.00 25.54 C
ATOM 21 C6 C A 53 -5.676 44.623 8.084 1.00 22.47 C
ATOM 22 P C A 54 -6.779 40.008 5.202 1.00 26.71 P
ATOM 23 OP1 C A 54 -6.760 38.961 4.167 1.00 24.99 O
ATOM 24 OP2 C A 54 -7.934 40.933 5.288 1.00 24.07 O
ATOM 25 O5' C A 54 -6.565 39.374 6.651 1.00 23.54 O
TER
ATOM 1 O3' U B 89 2.448 34.171 3.321 1.00 23.26 O
ATOM 2 P A B 90 3.105 35.594 3.697 1.00 24.29 P
ATOM 3 OP1 A B 90 3.441 36.203 2.395 1.00 26.11 O
ATOM 4 OP2 A B 90 4.200 35.424 4.707 1.00 22.65 O
ATOM 5 O5' A B 90 1.904 36.393 4.325 1.00 22.51 O
ATOM 6 C5' A B 90 0.766 36.648 3.526 1.00 23.02 C
ATOM 7 C4' A B 90 -0.159 37.629 4.189 1.00 26.24 C
ATOM 8 O4' A B 90 -0.938 36.961 5.210 1.00 22.26 O
ATOM 9 C3' A B 90 0.479 38.787 4.941 1.00 22.10 C
ATOM 10 O3' A B 90 0.983 39.808 4.098 1.00 23.45 O
ATOM 11 C2' A B 90 -0.672 39.252 5.820 1.00 22.26 C
ATOM 12 O2' A B 90 -1.597 40.007 5.043 1.00 23.78 O
ATOM 13 C1' A B 90 -1.324 37.917 6.174 1.00 21.09 C
ATOM 14 N9 A B 90 -1.005 37.398 7.521 1.00 20.50 N
ATOM 15 C8 A B 90 -0.265 36.279 7.833 1.00 19.73 C
ATOM 16 N7 A B 90 -0.200 36.034 9.126 1.00 19.19 N
ATOM 17 C5 A B 90 -0.953 37.057 9.688 1.00 18.45 C
ATOM 18 C6 A B 90 -1.279 37.355 11.020 1.00 18.63 C
ATOM 19 N6 A B 90 -0.846 36.622 12.061 1.00 15.14 N
ATOM 20 N1 A B 90 -2.076 38.440 11.245 1.00 20.34 N
ATOM 21 C2 A B 90 -2.502 39.179 10.198 1.00 20.26 C
ATOM 22 N3 A B 90 -2.255 38.988 8.892 1.00 20.05 N
ATOM 23 C4 A B 90 -1.466 37.903 8.707 1.00 18.97 C
ATOM 24 P A B 91 2.233 40.656 4.628 1.00 24.27 P
ATOM 25 OP1 A B 91 2.630 41.543 3.504 1.00 28.84 O
ATOM 26 OP2 A B 91 3.210 39.697 5.212 1.00 25.82 O
ATOM 27 O5' A B 91 1.616 41.502 5.825 1.00 21.23 O
TER
ATOM 2 P C A 53 -7.138 45.355 3.906 1.00 24.71 P
ATOM 3 OP1 C A 53 -7.344 44.748 2.564 1.00 28.92 O
ATOM 4 OP2 C A 53 -8.272 45.679 4.793 1.00 23.07 O
ATOM 5 O5' C A 53 -6.167 44.408 4.713 1.00 23.60 O
ATOM 6 C5' C A 53 -4.991 43.875 4.134 1.00 23.66 C
ATOM 7 C4' C A 53 -4.279 43.009 5.138 1.00 24.06 C
ATOM 8 O4' C A 53 -3.817 43.827 6.243 1.00 20.67 O
ATOM 9 C3' C A 53 -5.142 41.960 5.822 1.00 22.11 C
ATOM 10 O3' C A 53 -5.392 40.814 5.019 1.00 25.85 O
ATOM 11 C2' C A 53 -4.364 41.671 7.105 1.00 23.51 C
ATOM 12 O2' C A 53 -3.251 40.824 6.854 1.00 24.55 O
ATOM 13 C1' C A 53 -3.841 43.068 7.437 1.00 24.33 C
ATOM 14 N1 C A 53 -4.704 43.726 8.431 1.00 21.99 N
ATOM 15 C2 C A 53 -4.494 43.381 9.763 1.00 23.39 C
ATOM 16 O2 C A 53 -3.609 42.552 10.025 1.00 21.37 O
ATOM 17 N3 C A 53 -5.263 43.952 10.717 1.00 26.15 N
ATOM 18 C4 C A 53 -6.209 44.832 10.381 1.00 25.87 C
ATOM 19 N4 C A 53 -6.928 45.374 11.373 1.00 21.97 N
ATOM 20 C5 C A 53 -6.445 45.196 9.018 1.00 25.54 C
ATOM 21 C6 C A 53 -5.676 44.623 8.084 1.00 22.47 C
ATOM 22 P C A 54 -6.779 40.008 5.202 1.00 26.71 P
ATOM 23 OP1 C A 54 -6.760 38.961 4.167 1.00 24.99 O
ATOM 24 OP2 C A 54 -7.934 40.933 5.288 1.00 24.07 O
ATOM 25 O5' C A 54 -6.565 39.374 6.651 1.00 23.54 O
TER
ATOM 1 O3' U B 89 2.448 34.171 3.321 1.00 23.26 O
ATOM 2 P A B 90 3.105 35.594 3.697 1.00 24.29 P
ATOM 3 OP1 A B 90 3.441 36.203 2.395 1.00 26.11 O
ATOM 4 OP2 A B 90 4.200 35.424 4.707 1.00 22.65 O
ATOM 5 O5' A B 90 1.904 36.393 4.325 1.00 22.51 O
ATOM 6 C5' A B 90 0.766 36.648 3.526 1.00 23.02 C
ATOM 7 C4' A B 90 -0.159 37.629 4.189 1.00 26.24 C
ATOM 8 O4' A B 90 -0.938 36.961 5.210 1.00 22.26 O
ATOM 9 C3' A B 90 0.479 38.787 4.941 1.00 22.10 C
ATOM 10 O3' A B 90 0.983 39.808 4.098 1.00 23.45 O
ATOM 11 C2' A B 90 -0.672 39.252 5.820 1.00 22.26 C
ATOM 12 O2' A B 90 -1.597 40.007 5.043 1.00 23.78 O
ATOM 13 C1' A B 90 -1.324 37.917 6.174 1.00 21.09 C
ATOM 14 N9 A B 90 -1.005 37.398 7.521 1.00 20.50 N
ATOM 15 C8 A B 90 -0.265 36.279 7.833 1.00 19.73 C
ATOM 16 N7 A B 90 -0.200 36.034 9.126 1.00 19.19 N
ATOM 17 C5 A B 90 -0.953 37.057 9.688 1.00 18.45 C
ATOM 18 C6 A B 90 -1.279 37.355 11.020 1.00 18.63 C
ATOM 19 N6 A B 90 -0.846 36.622 12.061 1.00 15.14 N
ATOM 20 N1 A B 90 -2.076 38.440 11.245 1.00 20.34 N
ATOM 21 C2 A B 90 -2.502 39.179 10.198 1.00 20.26 C
ATOM 22 N3 A B 90 -2.255 38.988 8.892 1.00 20.05 N
ATOM 23 C4 A B 90 -1.466 37.903 8.707 1.00 18.97 C
ATOM 24 P A B 91 2.233 40.656 4.628 1.00 24.27 P
ATOM 25 OP1 A B 91 2.630 41.543 3.504 1.00 28.84 O
ATOM 26 OP2 A B 91 3.210 39.697 5.212 1.00 25.82 O
ATOM 27 O5' A B 91 1.616 41.502 5.825 1.00 21.23 O
TER
Atoms:
C2: (-4.494,43.381,9.763)
OP1: (-7.344,44.748,2.564)
OP2: (-8.272,45.679,4.793)
C4: (-6.209,44.832,10.381)
O5': (-6.167,44.408,4.713)
C3': (-5.142,41.960,5.822)
C1': (-3.841,43.068,7.437)
O4': (-3.817,43.827,6.243)
C5': (-4.991,43.875,4.134)
P: (-7.138,45.355,3.906)
O2: (-3.609,42.552,10.025)
C4': (-4.279,43.009,5.138)
C2': (-4.364,41.671,7.105)
O2': (-3.251,40.824,6.854)
N1: (-4.704,43.726,8.431)
N3: (-5.263,43.952,10.717)
N4: (-6.928,45.374,11.373)
C6: (-5.676,44.623,8.084)
C5: (-6.445,45.196,9.018)
O3': (-5.392,40.814,5.019)
OP1: (-7.344,44.748,2.564)
OP2: (-8.272,45.679,4.793)
C4: (-6.209,44.832,10.381)
O5': (-6.167,44.408,4.713)
C3': (-5.142,41.960,5.822)
C1': (-3.841,43.068,7.437)
O4': (-3.817,43.827,6.243)
C5': (-4.991,43.875,4.134)
P: (-7.138,45.355,3.906)
O2: (-3.609,42.552,10.025)
C4': (-4.279,43.009,5.138)
C2': (-4.364,41.671,7.105)
O2': (-3.251,40.824,6.854)
N1: (-4.704,43.726,8.431)
N3: (-5.263,43.952,10.717)
N4: (-6.928,45.374,11.373)
C6: (-5.676,44.623,8.084)
C5: (-6.445,45.196,9.018)
O3': (-5.392,40.814,5.019)
OP1: (3.441,36.203,2.395)
OP2: (4.200,35.424,4.707)
C3': (0.479,38.787,4.941)
C1': (-1.324,37.917,6.174)
C5': (0.766,36.648,3.526)
O4': (-0.938,36.961,5.210)
C8: (-0.265,36.279,7.833)
O2': (-1.597,40.007,5.043)
C6: (-1.279,37.355,11.020)
C5: (-0.953,37.057,9.688)
C4: (-1.466,37.903,8.707)
P: (3.105,35.594,3.697)
C4': (-0.159,37.629,4.189)
C2': (-0.672,39.252,5.820)
C2: (-2.502,39.179,10.198)
N1: (-2.076,38.440,11.245)
N3: (-2.255,38.988,8.892)
N6: (-0.846,36.622,12.061)
N7: (-0.200,36.034,9.126)
N9: (-1.005,37.398,7.521)
O5': (1.904,36.393,4.325)
O3': (0.983,39.808,4.098)
OP2: (4.200,35.424,4.707)
C3': (0.479,38.787,4.941)
C1': (-1.324,37.917,6.174)
C5': (0.766,36.648,3.526)
O4': (-0.938,36.961,5.210)
C8: (-0.265,36.279,7.833)
O2': (-1.597,40.007,5.043)
C6: (-1.279,37.355,11.020)
C5: (-0.953,37.057,9.688)
C4: (-1.466,37.903,8.707)
P: (3.105,35.594,3.697)
C4': (-0.159,37.629,4.189)
C2': (-0.672,39.252,5.820)
C2: (-2.502,39.179,10.198)
N1: (-2.076,38.440,11.245)
N3: (-2.255,38.988,8.892)
N6: (-0.846,36.622,12.061)
N7: (-0.200,36.034,9.126)
N9: (-1.005,37.398,7.521)
O5': (1.904,36.393,4.325)
O3': (0.983,39.808,4.098)
Image (generated by PyMOL):