Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:0428:0140
Extra
PDB:
ATOM 1 O3' A A 427 56.861 116.526 35.537 1.00 51.06 O
ATOM 2 P C A 428 55.657 117.494 35.980 1.00 52.53 P
ATOM 3 OP1 C A 428 55.288 117.135 37.374 1.00 51.62 O
ATOM 4 OP2 C A 428 54.619 117.487 34.917 1.00 54.46 O
ATOM 5 O5' C A 428 56.301 118.951 35.993 1.00 54.91 O
ATOM 6 C5' C A 428 57.278 119.331 36.987 1.00 57.09 C
ATOM 7 C4' C A 428 57.657 120.779 36.806 1.00 58.83 C
ATOM 8 O4' C A 428 58.161 120.958 35.460 1.00 59.05 O
ATOM 9 C3' C A 428 56.506 121.768 36.950 1.00 58.83 C
ATOM 10 O3' C A 428 56.429 122.185 38.315 1.00 61.56 O
ATOM 11 C2' C A 428 56.931 122.921 36.050 1.00 58.52 C
ATOM 12 O2' C A 428 57.803 123.813 36.706 1.00 57.40 O
ATOM 13 C1' C A 428 57.702 122.191 34.943 1.00 58.84 C
ATOM 14 N1 C A 428 56.952 121.911 33.711 1.00 58.96 N
ATOM 15 C2 C A 428 57.084 122.778 32.616 1.00 59.32 C
ATOM 16 O2 C A 428 57.797 123.785 32.718 1.00 59.31 O
ATOM 17 N3 C A 428 56.438 122.494 31.472 1.00 60.05 N
ATOM 18 C4 C A 428 55.691 121.398 31.386 1.00 59.89 C
ATOM 19 N4 C A 428 55.104 121.141 30.222 1.00 61.31 N
ATOM 20 C5 C A 428 55.519 120.513 32.487 1.00 60.40 C
ATOM 21 C6 C A 428 56.156 120.807 33.620 1.00 59.24 C
ATOM 22 P A A 429 55.046 122.738 38.924 1.00 64.55 P
ATOM 23 OP1 A A 429 55.321 123.106 40.342 1.00 63.60 O
ATOM 24 OP2 A A 429 53.953 121.779 38.613 1.00 64.41 O
ATOM 25 O5' A A 429 54.775 124.083 38.122 1.00 64.12 O
TER
ATOM 1 O3' A B 139 60.528 128.519 41.477 1.00 60.15 O
ATOM 2 P A B 140 62.082 128.170 41.683 1.00 60.63 P
ATOM 3 OP1 A B 140 62.339 128.218 43.145 1.00 63.02 O
ATOM 4 OP2 A B 140 62.906 129.003 40.769 1.00 62.90 O
ATOM 5 O5' A B 140 62.202 126.649 41.226 1.00 58.68 O
ATOM 6 C5' A B 140 61.375 125.648 41.835 1.00 55.28 C
ATOM 7 C4' A B 140 60.666 124.835 40.778 1.00 54.54 C
ATOM 8 O4' A B 140 60.061 125.724 39.801 1.00 52.94 O
ATOM 9 C3' A B 140 61.530 123.914 39.934 1.00 53.44 C
ATOM 10 O3' A B 140 61.786 122.694 40.614 1.00 54.49 O
ATOM 11 C2' A B 140 60.652 123.699 38.711 1.00 52.91 C
ATOM 12 O2' A B 140 59.615 122.772 38.962 1.00 50.10 O
ATOM 13 C1' A B 140 60.056 125.097 38.531 1.00 52.88 C
ATOM 14 N9 A B 140 60.803 125.939 37.592 1.00 54.59 N
ATOM 15 C8 A B 140 61.712 126.934 37.862 1.00 54.28 C
ATOM 16 N7 A B 140 62.177 127.527 36.790 1.00 54.16 N
ATOM 17 C5 A B 140 61.538 126.874 35.742 1.00 54.47 C
ATOM 18 C6 A B 140 61.588 127.040 34.346 1.00 53.97 C
ATOM 19 N6 A B 140 62.332 127.957 33.726 1.00 55.55 N
ATOM 20 N1 A B 140 60.829 126.224 33.593 1.00 52.94 N
ATOM 21 C2 A B 140 60.075 125.313 34.199 1.00 53.86 C
ATOM 22 N3 A B 140 59.939 125.059 35.491 1.00 54.77 N
ATOM 23 C4 A B 140 60.703 125.887 36.220 1.00 54.82 C
ATOM 24 P C B 141 62.996 121.762 40.145 1.00 54.13 P
ATOM 25 OP1 C B 141 63.027 120.583 41.038 1.00 53.45 O
ATOM 26 OP2 C B 141 64.206 122.608 40.000 1.00 53.85 O
ATOM 27 O5' C B 141 62.535 121.257 38.708 1.00 55.45 O
TER
ATOM 2 P C A 428 55.657 117.494 35.980 1.00 52.53 P
ATOM 3 OP1 C A 428 55.288 117.135 37.374 1.00 51.62 O
ATOM 4 OP2 C A 428 54.619 117.487 34.917 1.00 54.46 O
ATOM 5 O5' C A 428 56.301 118.951 35.993 1.00 54.91 O
ATOM 6 C5' C A 428 57.278 119.331 36.987 1.00 57.09 C
ATOM 7 C4' C A 428 57.657 120.779 36.806 1.00 58.83 C
ATOM 8 O4' C A 428 58.161 120.958 35.460 1.00 59.05 O
ATOM 9 C3' C A 428 56.506 121.768 36.950 1.00 58.83 C
ATOM 10 O3' C A 428 56.429 122.185 38.315 1.00 61.56 O
ATOM 11 C2' C A 428 56.931 122.921 36.050 1.00 58.52 C
ATOM 12 O2' C A 428 57.803 123.813 36.706 1.00 57.40 O
ATOM 13 C1' C A 428 57.702 122.191 34.943 1.00 58.84 C
ATOM 14 N1 C A 428 56.952 121.911 33.711 1.00 58.96 N
ATOM 15 C2 C A 428 57.084 122.778 32.616 1.00 59.32 C
ATOM 16 O2 C A 428 57.797 123.785 32.718 1.00 59.31 O
ATOM 17 N3 C A 428 56.438 122.494 31.472 1.00 60.05 N
ATOM 18 C4 C A 428 55.691 121.398 31.386 1.00 59.89 C
ATOM 19 N4 C A 428 55.104 121.141 30.222 1.00 61.31 N
ATOM 20 C5 C A 428 55.519 120.513 32.487 1.00 60.40 C
ATOM 21 C6 C A 428 56.156 120.807 33.620 1.00 59.24 C
ATOM 22 P A A 429 55.046 122.738 38.924 1.00 64.55 P
ATOM 23 OP1 A A 429 55.321 123.106 40.342 1.00 63.60 O
ATOM 24 OP2 A A 429 53.953 121.779 38.613 1.00 64.41 O
ATOM 25 O5' A A 429 54.775 124.083 38.122 1.00 64.12 O
TER
ATOM 1 O3' A B 139 60.528 128.519 41.477 1.00 60.15 O
ATOM 2 P A B 140 62.082 128.170 41.683 1.00 60.63 P
ATOM 3 OP1 A B 140 62.339 128.218 43.145 1.00 63.02 O
ATOM 4 OP2 A B 140 62.906 129.003 40.769 1.00 62.90 O
ATOM 5 O5' A B 140 62.202 126.649 41.226 1.00 58.68 O
ATOM 6 C5' A B 140 61.375 125.648 41.835 1.00 55.28 C
ATOM 7 C4' A B 140 60.666 124.835 40.778 1.00 54.54 C
ATOM 8 O4' A B 140 60.061 125.724 39.801 1.00 52.94 O
ATOM 9 C3' A B 140 61.530 123.914 39.934 1.00 53.44 C
ATOM 10 O3' A B 140 61.786 122.694 40.614 1.00 54.49 O
ATOM 11 C2' A B 140 60.652 123.699 38.711 1.00 52.91 C
ATOM 12 O2' A B 140 59.615 122.772 38.962 1.00 50.10 O
ATOM 13 C1' A B 140 60.056 125.097 38.531 1.00 52.88 C
ATOM 14 N9 A B 140 60.803 125.939 37.592 1.00 54.59 N
ATOM 15 C8 A B 140 61.712 126.934 37.862 1.00 54.28 C
ATOM 16 N7 A B 140 62.177 127.527 36.790 1.00 54.16 N
ATOM 17 C5 A B 140 61.538 126.874 35.742 1.00 54.47 C
ATOM 18 C6 A B 140 61.588 127.040 34.346 1.00 53.97 C
ATOM 19 N6 A B 140 62.332 127.957 33.726 1.00 55.55 N
ATOM 20 N1 A B 140 60.829 126.224 33.593 1.00 52.94 N
ATOM 21 C2 A B 140 60.075 125.313 34.199 1.00 53.86 C
ATOM 22 N3 A B 140 59.939 125.059 35.491 1.00 54.77 N
ATOM 23 C4 A B 140 60.703 125.887 36.220 1.00 54.82 C
ATOM 24 P C B 141 62.996 121.762 40.145 1.00 54.13 P
ATOM 25 OP1 C B 141 63.027 120.583 41.038 1.00 53.45 O
ATOM 26 OP2 C B 141 64.206 122.608 40.000 1.00 53.85 O
ATOM 27 O5' C B 141 62.535 121.257 38.708 1.00 55.45 O
TER
Atoms:
C2: (57.084,122.778,32.616)
OP1: (55.288,117.135,37.374)
OP2: (54.619,117.487,34.917)
C4: (55.691,121.398,31.386)
O5': (56.301,118.951,35.993)
C3': (56.506,121.768,36.950)
C1': (57.702,122.191,34.943)
O4': (58.161,120.958,35.460)
C5': (57.278,119.331,36.987)
P: (55.657,117.494,35.980)
O2: (57.797,123.785,32.718)
C4': (57.657,120.779,36.806)
C2': (56.931,122.921,36.050)
O2': (57.803,123.813,36.706)
N1: (56.952,121.911,33.711)
N3: (56.438,122.494,31.472)
N4: (55.104,121.141,30.222)
C6: (56.156,120.807,33.620)
C5: (55.519,120.513,32.487)
O3': (56.429,122.185,38.315)
OP1: (55.288,117.135,37.374)
OP2: (54.619,117.487,34.917)
C4: (55.691,121.398,31.386)
O5': (56.301,118.951,35.993)
C3': (56.506,121.768,36.950)
C1': (57.702,122.191,34.943)
O4': (58.161,120.958,35.460)
C5': (57.278,119.331,36.987)
P: (55.657,117.494,35.980)
O2: (57.797,123.785,32.718)
C4': (57.657,120.779,36.806)
C2': (56.931,122.921,36.050)
O2': (57.803,123.813,36.706)
N1: (56.952,121.911,33.711)
N3: (56.438,122.494,31.472)
N4: (55.104,121.141,30.222)
C6: (56.156,120.807,33.620)
C5: (55.519,120.513,32.487)
O3': (56.429,122.185,38.315)
OP1: (62.339,128.218,43.145)
OP2: (62.906,129.003,40.769)
C3': (61.530,123.914,39.934)
C1': (60.056,125.097,38.531)
C5': (61.375,125.648,41.835)
O4': (60.061,125.724,39.801)
C8: (61.712,126.934,37.862)
O2': (59.615,122.772,38.962)
C6: (61.588,127.040,34.346)
C5: (61.538,126.874,35.742)
C4: (60.703,125.887,36.220)
P: (62.082,128.170,41.683)
C4': (60.666,124.835,40.778)
C2': (60.652,123.699,38.711)
C2: (60.075,125.313,34.199)
N1: (60.829,126.224,33.593)
N3: (59.939,125.059,35.491)
N6: (62.332,127.957,33.726)
N7: (62.177,127.527,36.790)
N9: (60.803,125.939,37.592)
O5': (62.202,126.649,41.226)
O3': (61.786,122.694,40.614)
OP2: (62.906,129.003,40.769)
C3': (61.530,123.914,39.934)
C1': (60.056,125.097,38.531)
C5': (61.375,125.648,41.835)
O4': (60.061,125.724,39.801)
C8: (61.712,126.934,37.862)
O2': (59.615,122.772,38.962)
C6: (61.588,127.040,34.346)
C5: (61.538,126.874,35.742)
C4: (60.703,125.887,36.220)
P: (62.082,128.170,41.683)
C4': (60.666,124.835,40.778)
C2': (60.652,123.699,38.711)
C2: (60.075,125.313,34.199)
N1: (60.829,126.224,33.593)
N3: (59.939,125.059,35.491)
N6: (62.332,127.957,33.726)
N7: (62.177,127.527,36.790)
N9: (60.803,125.939,37.592)
O5': (62.202,126.649,41.226)
O3': (61.786,122.694,40.614)
Image (generated by PyMOL):