Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12564:1750
Extra
PDB:
ATOM 1 O3' A A2563 33.036 -3.229 81.246 1.00 37.86 O
ATOM 2 P C A2564 33.863 -2.990 79.898 1.00 38.24 P
ATOM 3 OP1 C A2564 34.717 -1.785 80.098 1.00 38.29 O
ATOM 4 OP2 C A2564 32.876 -2.980 78.795 1.00 38.19 O
ATOM 5 O5' C A2564 34.784 -4.297 79.808 1.00 38.16 O
ATOM 6 C5' C A2564 35.851 -4.499 80.706 1.00 38.21 C
ATOM 7 C4' C A2564 36.479 -5.848 80.507 1.00 38.14 C
ATOM 8 O4' C A2564 35.483 -6.896 80.580 1.00 38.14 O
ATOM 9 C3' C A2564 37.151 -6.086 79.178 1.00 38.00 C
ATOM 10 O3' C A2564 38.427 -5.495 79.146 1.00 38.00 O
ATOM 11 C2' C A2564 37.211 -7.594 79.133 1.00 37.97 C
ATOM 12 O2' C A2564 38.272 -8.042 79.963 1.00 38.02 O
ATOM 13 C1' C A2564 35.883 -7.982 79.797 1.00 38.04 C
ATOM 14 N1 C A2564 34.822 -8.258 78.817 1.00 37.99 N
ATOM 15 C2 C A2564 34.806 -9.462 78.075 1.00 37.92 C
ATOM 16 O2 C A2564 35.693 -10.293 78.242 1.00 37.91 O
ATOM 17 N3 C A2564 33.823 -9.713 77.170 1.00 37.89 N
ATOM 18 C4 C A2564 32.857 -8.810 77.005 1.00 37.91 C
ATOM 19 N4 C A2564 31.906 -9.089 76.133 1.00 37.89 N
ATOM 20 C5 C A2564 32.848 -7.597 77.741 1.00 37.97 C
ATOM 21 C6 C A2564 33.828 -7.350 78.613 1.00 38.01 C
ATOM 22 P A A2565 39.152 -5.118 77.776 1.00 41.56 P
ATOM 23 OP1 A A2565 40.411 -4.415 78.161 1.00 41.61 O
ATOM 24 OP2 A A2565 38.181 -4.405 76.894 1.00 41.53 O
ATOM 25 O5' A A2565 39.480 -6.540 77.194 1.00 41.48 O
TER
ATOM 1 O3' G B 749 45.488 -6.442 83.078 1.00 34.14 O
ATOM 2 P A B 750 45.493 -7.034 84.557 1.00 37.82 P
ATOM 3 OP1 A B 750 45.744 -5.928 85.494 1.00 37.97 O
ATOM 4 OP2 A B 750 46.419 -8.126 84.523 1.00 37.83 O
ATOM 5 O5' A B 750 44.018 -7.561 84.786 1.00 37.81 O
ATOM 6 C5' A B 750 43.384 -8.393 83.861 1.00 37.67 C
ATOM 7 C4' A B 750 42.245 -7.693 83.187 1.00 37.59 C
ATOM 8 O4' A B 750 41.960 -8.375 81.962 1.00 37.45 O
ATOM 9 C3' A B 750 40.934 -7.626 83.961 1.00 37.67 C
ATOM 10 O3' A B 750 40.763 -6.358 84.580 1.00 37.76 O
ATOM 11 C2' A B 750 39.881 -7.903 82.901 1.00 37.54 C
ATOM 12 O2' A B 750 39.521 -6.702 82.259 1.00 37.49 O
ATOM 13 C1' A B 750 40.632 -8.721 81.890 1.00 37.43 C
ATOM 14 N9 A B 750 40.562 -10.151 82.096 1.00 37.45 N
ATOM 15 C8 A B 750 41.310 -10.914 82.924 1.00 37.54 C
ATOM 16 N7 A B 750 41.109 -12.191 82.774 1.00 37.54 N
ATOM 17 C5 A B 750 40.225 -12.221 81.707 1.00 37.43 C
ATOM 18 C6 A B 750 39.650 -13.271 81.036 1.00 37.38 C
ATOM 19 N6 A B 750 39.898 -14.505 81.403 1.00 37.45 N
ATOM 20 N1 A B 750 38.796 -13.009 80.039 1.00 37.29 N
ATOM 21 C2 A B 750 38.568 -11.724 79.754 1.00 37.24 C
ATOM 22 N3 A B 750 39.057 -10.631 80.287 1.00 37.27 N
ATOM 23 C4 A B 750 39.884 -10.975 81.271 1.00 37.37 C
ATOM 24 P A B 751 39.601 -6.086 85.694 1.00 38.04 P
ATOM 25 OP1 A B 751 39.463 -4.633 85.854 1.00 38.10 O
ATOM 26 OP2 A B 751 39.924 -6.857 86.858 1.00 38.17 O
ATOM 27 O5' A B 751 38.294 -6.678 85.029 1.00 37.94 O
TER
ATOM 2 P C A2564 33.863 -2.990 79.898 1.00 38.24 P
ATOM 3 OP1 C A2564 34.717 -1.785 80.098 1.00 38.29 O
ATOM 4 OP2 C A2564 32.876 -2.980 78.795 1.00 38.19 O
ATOM 5 O5' C A2564 34.784 -4.297 79.808 1.00 38.16 O
ATOM 6 C5' C A2564 35.851 -4.499 80.706 1.00 38.21 C
ATOM 7 C4' C A2564 36.479 -5.848 80.507 1.00 38.14 C
ATOM 8 O4' C A2564 35.483 -6.896 80.580 1.00 38.14 O
ATOM 9 C3' C A2564 37.151 -6.086 79.178 1.00 38.00 C
ATOM 10 O3' C A2564 38.427 -5.495 79.146 1.00 38.00 O
ATOM 11 C2' C A2564 37.211 -7.594 79.133 1.00 37.97 C
ATOM 12 O2' C A2564 38.272 -8.042 79.963 1.00 38.02 O
ATOM 13 C1' C A2564 35.883 -7.982 79.797 1.00 38.04 C
ATOM 14 N1 C A2564 34.822 -8.258 78.817 1.00 37.99 N
ATOM 15 C2 C A2564 34.806 -9.462 78.075 1.00 37.92 C
ATOM 16 O2 C A2564 35.693 -10.293 78.242 1.00 37.91 O
ATOM 17 N3 C A2564 33.823 -9.713 77.170 1.00 37.89 N
ATOM 18 C4 C A2564 32.857 -8.810 77.005 1.00 37.91 C
ATOM 19 N4 C A2564 31.906 -9.089 76.133 1.00 37.89 N
ATOM 20 C5 C A2564 32.848 -7.597 77.741 1.00 37.97 C
ATOM 21 C6 C A2564 33.828 -7.350 78.613 1.00 38.01 C
ATOM 22 P A A2565 39.152 -5.118 77.776 1.00 41.56 P
ATOM 23 OP1 A A2565 40.411 -4.415 78.161 1.00 41.61 O
ATOM 24 OP2 A A2565 38.181 -4.405 76.894 1.00 41.53 O
ATOM 25 O5' A A2565 39.480 -6.540 77.194 1.00 41.48 O
TER
ATOM 1 O3' G B 749 45.488 -6.442 83.078 1.00 34.14 O
ATOM 2 P A B 750 45.493 -7.034 84.557 1.00 37.82 P
ATOM 3 OP1 A B 750 45.744 -5.928 85.494 1.00 37.97 O
ATOM 4 OP2 A B 750 46.419 -8.126 84.523 1.00 37.83 O
ATOM 5 O5' A B 750 44.018 -7.561 84.786 1.00 37.81 O
ATOM 6 C5' A B 750 43.384 -8.393 83.861 1.00 37.67 C
ATOM 7 C4' A B 750 42.245 -7.693 83.187 1.00 37.59 C
ATOM 8 O4' A B 750 41.960 -8.375 81.962 1.00 37.45 O
ATOM 9 C3' A B 750 40.934 -7.626 83.961 1.00 37.67 C
ATOM 10 O3' A B 750 40.763 -6.358 84.580 1.00 37.76 O
ATOM 11 C2' A B 750 39.881 -7.903 82.901 1.00 37.54 C
ATOM 12 O2' A B 750 39.521 -6.702 82.259 1.00 37.49 O
ATOM 13 C1' A B 750 40.632 -8.721 81.890 1.00 37.43 C
ATOM 14 N9 A B 750 40.562 -10.151 82.096 1.00 37.45 N
ATOM 15 C8 A B 750 41.310 -10.914 82.924 1.00 37.54 C
ATOM 16 N7 A B 750 41.109 -12.191 82.774 1.00 37.54 N
ATOM 17 C5 A B 750 40.225 -12.221 81.707 1.00 37.43 C
ATOM 18 C6 A B 750 39.650 -13.271 81.036 1.00 37.38 C
ATOM 19 N6 A B 750 39.898 -14.505 81.403 1.00 37.45 N
ATOM 20 N1 A B 750 38.796 -13.009 80.039 1.00 37.29 N
ATOM 21 C2 A B 750 38.568 -11.724 79.754 1.00 37.24 C
ATOM 22 N3 A B 750 39.057 -10.631 80.287 1.00 37.27 N
ATOM 23 C4 A B 750 39.884 -10.975 81.271 1.00 37.37 C
ATOM 24 P A B 751 39.601 -6.086 85.694 1.00 38.04 P
ATOM 25 OP1 A B 751 39.463 -4.633 85.854 1.00 38.10 O
ATOM 26 OP2 A B 751 39.924 -6.857 86.858 1.00 38.17 O
ATOM 27 O5' A B 751 38.294 -6.678 85.029 1.00 37.94 O
TER
Atoms:
C2: (34.806,-9.462,78.075)
OP1: (34.717,-1.785,80.098)
OP2: (32.876,-2.980,78.795)
C4: (32.857,-8.810,77.005)
O5': (34.784,-4.297,79.808)
C3': (37.151,-6.086,79.178)
C1': (35.883,-7.982,79.797)
O4': (35.483,-6.896,80.580)
C5': (35.851,-4.499,80.706)
P: (33.863,-2.990,79.898)
O2: (35.693,-10.293,78.242)
C4': (36.479,-5.848,80.507)
C2': (37.211,-7.594,79.133)
O2': (38.272,-8.042,79.963)
N1: (34.822,-8.258,78.817)
N3: (33.823,-9.713,77.170)
N4: (31.906,-9.089,76.133)
C6: (33.828,-7.350,78.613)
C5: (32.848,-7.597,77.741)
O3': (38.427,-5.495,79.146)
OP1: (34.717,-1.785,80.098)
OP2: (32.876,-2.980,78.795)
C4: (32.857,-8.810,77.005)
O5': (34.784,-4.297,79.808)
C3': (37.151,-6.086,79.178)
C1': (35.883,-7.982,79.797)
O4': (35.483,-6.896,80.580)
C5': (35.851,-4.499,80.706)
P: (33.863,-2.990,79.898)
O2: (35.693,-10.293,78.242)
C4': (36.479,-5.848,80.507)
C2': (37.211,-7.594,79.133)
O2': (38.272,-8.042,79.963)
N1: (34.822,-8.258,78.817)
N3: (33.823,-9.713,77.170)
N4: (31.906,-9.089,76.133)
C6: (33.828,-7.350,78.613)
C5: (32.848,-7.597,77.741)
O3': (38.427,-5.495,79.146)
OP1: (45.744,-5.928,85.494)
OP2: (46.419,-8.126,84.523)
C3': (40.934,-7.626,83.961)
C1': (40.632,-8.721,81.890)
C5': (43.384,-8.393,83.861)
O4': (41.960,-8.375,81.962)
C8: (41.310,-10.914,82.924)
O2': (39.521,-6.702,82.259)
C6: (39.650,-13.271,81.036)
C5: (40.225,-12.221,81.707)
C4: (39.884,-10.975,81.271)
P: (45.493,-7.034,84.557)
C4': (42.245,-7.693,83.187)
C2': (39.881,-7.903,82.901)
C2: (38.568,-11.724,79.754)
N1: (38.796,-13.009,80.039)
N3: (39.057,-10.631,80.287)
N6: (39.898,-14.505,81.403)
N7: (41.109,-12.191,82.774)
N9: (40.562,-10.151,82.096)
O5': (44.018,-7.561,84.786)
O3': (40.763,-6.358,84.580)
OP2: (46.419,-8.126,84.523)
C3': (40.934,-7.626,83.961)
C1': (40.632,-8.721,81.890)
C5': (43.384,-8.393,83.861)
O4': (41.960,-8.375,81.962)
C8: (41.310,-10.914,82.924)
O2': (39.521,-6.702,82.259)
C6: (39.650,-13.271,81.036)
C5: (40.225,-12.221,81.707)
C4: (39.884,-10.975,81.271)
P: (45.493,-7.034,84.557)
C4': (42.245,-7.693,83.187)
C2': (39.881,-7.903,82.901)
C2: (38.568,-11.724,79.754)
N1: (38.796,-13.009,80.039)
N3: (39.057,-10.631,80.287)
N6: (39.898,-14.505,81.403)
N7: (41.109,-12.191,82.774)
N9: (40.562,-10.151,82.096)
O5': (44.018,-7.561,84.786)
O3': (40.763,-6.358,84.580)
Image (generated by PyMOL):