Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3D2V:B13:B57
Extra
PDB:
ATOM 1 O3' G A 12 -5.294 29.596 -4.622 1.00 26.83 O
ATOM 2 P C A 13 -4.901 28.181 -3.993 1.00 30.69 P
ATOM 3 OP1 C A 13 -4.080 27.456 -4.988 1.00 28.72 O
ATOM 4 OP2 C A 13 -6.134 27.568 -3.451 1.00 30.74 O
ATOM 5 O5' C A 13 -3.949 28.577 -2.771 1.00 29.55 O
ATOM 6 C5' C A 13 -2.738 29.281 -3.016 1.00 29.89 C
ATOM 7 C4' C A 13 -2.108 29.724 -1.710 1.00 26.74 C
ATOM 8 O4' C A 13 -2.978 30.688 -1.068 1.00 27.77 O
ATOM 9 C3' C A 13 -1.943 28.631 -0.665 1.00 26.84 C
ATOM 10 O3' C A 13 -0.757 27.883 -0.891 1.00 29.59 O
ATOM 11 C2' C A 13 -1.829 29.467 0.599 1.00 29.17 C
ATOM 12 O2' C A 13 -0.551 30.053 0.728 1.00 26.51 O
ATOM 13 C1' C A 13 -2.870 30.549 0.334 1.00 28.80 C
ATOM 14 N1 C A 13 -4.203 30.204 0.873 1.00 30.89 N
ATOM 15 C2 C A 13 -4.421 30.326 2.246 1.00 31.80 C
ATOM 16 O2 C A 13 -3.494 30.726 2.964 1.00 31.53 O
ATOM 17 N3 C A 13 -5.641 30.008 2.743 1.00 32.52 N
ATOM 18 C4 C A 13 -6.606 29.584 1.927 1.00 32.47 C
ATOM 19 N4 C A 13 -7.789 29.284 2.472 1.00 34.30 N
ATOM 20 C5 C A 13 -6.401 29.451 0.522 1.00 30.66 C
ATOM 21 C6 C A 13 -5.193 29.767 0.041 1.00 33.30 C
ATOM 22 P U A 14 -0.806 26.288 -0.786 1.00 32.53 P
ATOM 23 OP1 U A 14 0.474 25.755 -1.304 1.00 37.39 O
ATOM 24 OP2 U A 14 -2.088 25.842 -1.372 1.00 32.37 O
ATOM 25 O5' U A 14 -0.860 26.025 0.788 1.00 31.20 O
TER
ATOM 1 O3' A B 56 7.429 29.094 4.379 1.00 38.63 O
ATOM 2 P A B 57 7.632 30.071 3.126 1.00 39.75 P
ATOM 3 OP1 A B 57 8.630 29.447 2.229 1.00 38.76 O
ATOM 4 OP2 A B 57 7.835 31.441 3.641 1.00 38.82 O
ATOM 5 O5' A B 57 6.214 29.991 2.392 1.00 36.66 O
ATOM 6 C5' A B 57 5.828 28.766 1.783 1.00 38.21 C
ATOM 7 C4' A B 57 4.385 28.840 1.330 1.00 38.03 C
ATOM 8 O4' A B 57 3.523 28.943 2.488 1.00 33.55 O
ATOM 9 C3' A B 57 4.051 30.061 0.486 1.00 34.09 C
ATOM 10 O3' A B 57 4.352 29.783 -0.871 1.00 34.34 O
ATOM 11 C2' A B 57 2.549 30.173 0.709 1.00 30.05 C
ATOM 12 O2' A B 57 1.839 29.265 -0.109 1.00 31.34 O
ATOM 13 C1' A B 57 2.409 29.756 2.172 1.00 31.28 C
ATOM 14 N9 A B 57 2.382 30.860 3.124 1.00 31.95 N
ATOM 15 C8 A B 57 3.446 31.397 3.792 1.00 32.91 C
ATOM 16 N7 A B 57 3.121 32.383 4.594 1.00 33.03 N
ATOM 17 C5 A B 57 1.750 32.500 4.443 1.00 31.18 C
ATOM 18 C6 A B 57 0.801 33.363 5.022 1.00 32.69 C
ATOM 19 N6 A B 57 1.114 34.314 5.911 1.00 34.02 N
ATOM 20 N1 A B 57 -0.488 33.210 4.654 1.00 31.67 N
ATOM 21 C2 A B 57 -0.797 32.258 3.766 1.00 30.26 C
ATOM 22 N3 A B 57 0.005 31.391 3.153 1.00 33.31 N
ATOM 23 C4 A B 57 1.278 31.566 3.541 1.00 33.67 C
ATOM 24 P U B 58 4.810 30.950 -1.869 1.00 36.52 P
ATOM 25 OP1 U B 58 5.320 30.292 -3.090 1.00 30.07 O
ATOM 26 OP2 U B 58 5.664 31.900 -1.122 1.00 36.79 O
ATOM 27 O5' U B 58 3.436 31.687 -2.224 1.00 32.09 O
TER
ATOM 2 P C A 13 -4.901 28.181 -3.993 1.00 30.69 P
ATOM 3 OP1 C A 13 -4.080 27.456 -4.988 1.00 28.72 O
ATOM 4 OP2 C A 13 -6.134 27.568 -3.451 1.00 30.74 O
ATOM 5 O5' C A 13 -3.949 28.577 -2.771 1.00 29.55 O
ATOM 6 C5' C A 13 -2.738 29.281 -3.016 1.00 29.89 C
ATOM 7 C4' C A 13 -2.108 29.724 -1.710 1.00 26.74 C
ATOM 8 O4' C A 13 -2.978 30.688 -1.068 1.00 27.77 O
ATOM 9 C3' C A 13 -1.943 28.631 -0.665 1.00 26.84 C
ATOM 10 O3' C A 13 -0.757 27.883 -0.891 1.00 29.59 O
ATOM 11 C2' C A 13 -1.829 29.467 0.599 1.00 29.17 C
ATOM 12 O2' C A 13 -0.551 30.053 0.728 1.00 26.51 O
ATOM 13 C1' C A 13 -2.870 30.549 0.334 1.00 28.80 C
ATOM 14 N1 C A 13 -4.203 30.204 0.873 1.00 30.89 N
ATOM 15 C2 C A 13 -4.421 30.326 2.246 1.00 31.80 C
ATOM 16 O2 C A 13 -3.494 30.726 2.964 1.00 31.53 O
ATOM 17 N3 C A 13 -5.641 30.008 2.743 1.00 32.52 N
ATOM 18 C4 C A 13 -6.606 29.584 1.927 1.00 32.47 C
ATOM 19 N4 C A 13 -7.789 29.284 2.472 1.00 34.30 N
ATOM 20 C5 C A 13 -6.401 29.451 0.522 1.00 30.66 C
ATOM 21 C6 C A 13 -5.193 29.767 0.041 1.00 33.30 C
ATOM 22 P U A 14 -0.806 26.288 -0.786 1.00 32.53 P
ATOM 23 OP1 U A 14 0.474 25.755 -1.304 1.00 37.39 O
ATOM 24 OP2 U A 14 -2.088 25.842 -1.372 1.00 32.37 O
ATOM 25 O5' U A 14 -0.860 26.025 0.788 1.00 31.20 O
TER
ATOM 1 O3' A B 56 7.429 29.094 4.379 1.00 38.63 O
ATOM 2 P A B 57 7.632 30.071 3.126 1.00 39.75 P
ATOM 3 OP1 A B 57 8.630 29.447 2.229 1.00 38.76 O
ATOM 4 OP2 A B 57 7.835 31.441 3.641 1.00 38.82 O
ATOM 5 O5' A B 57 6.214 29.991 2.392 1.00 36.66 O
ATOM 6 C5' A B 57 5.828 28.766 1.783 1.00 38.21 C
ATOM 7 C4' A B 57 4.385 28.840 1.330 1.00 38.03 C
ATOM 8 O4' A B 57 3.523 28.943 2.488 1.00 33.55 O
ATOM 9 C3' A B 57 4.051 30.061 0.486 1.00 34.09 C
ATOM 10 O3' A B 57 4.352 29.783 -0.871 1.00 34.34 O
ATOM 11 C2' A B 57 2.549 30.173 0.709 1.00 30.05 C
ATOM 12 O2' A B 57 1.839 29.265 -0.109 1.00 31.34 O
ATOM 13 C1' A B 57 2.409 29.756 2.172 1.00 31.28 C
ATOM 14 N9 A B 57 2.382 30.860 3.124 1.00 31.95 N
ATOM 15 C8 A B 57 3.446 31.397 3.792 1.00 32.91 C
ATOM 16 N7 A B 57 3.121 32.383 4.594 1.00 33.03 N
ATOM 17 C5 A B 57 1.750 32.500 4.443 1.00 31.18 C
ATOM 18 C6 A B 57 0.801 33.363 5.022 1.00 32.69 C
ATOM 19 N6 A B 57 1.114 34.314 5.911 1.00 34.02 N
ATOM 20 N1 A B 57 -0.488 33.210 4.654 1.00 31.67 N
ATOM 21 C2 A B 57 -0.797 32.258 3.766 1.00 30.26 C
ATOM 22 N3 A B 57 0.005 31.391 3.153 1.00 33.31 N
ATOM 23 C4 A B 57 1.278 31.566 3.541 1.00 33.67 C
ATOM 24 P U B 58 4.810 30.950 -1.869 1.00 36.52 P
ATOM 25 OP1 U B 58 5.320 30.292 -3.090 1.00 30.07 O
ATOM 26 OP2 U B 58 5.664 31.900 -1.122 1.00 36.79 O
ATOM 27 O5' U B 58 3.436 31.687 -2.224 1.00 32.09 O
TER
Atoms:
C2: (-4.421,30.326,2.246)
OP1: (-4.080,27.456,-4.988)
OP2: (-6.134,27.568,-3.451)
C4: (-6.606,29.584,1.927)
O5': (-3.949,28.577,-2.771)
C3': (-1.943,28.631,-0.665)
C1': (-2.870,30.549,0.334)
O4': (-2.978,30.688,-1.068)
C5': (-2.738,29.281,-3.016)
P: (-4.901,28.181,-3.993)
O2: (-3.494,30.726,2.964)
C4': (-2.108,29.724,-1.710)
C2': (-1.829,29.467,0.599)
O2': (-0.551,30.053,0.728)
N1: (-4.203,30.204,0.873)
N3: (-5.641,30.008,2.743)
N4: (-7.789,29.284,2.472)
C6: (-5.193,29.767,0.041)
C5: (-6.401,29.451,0.522)
O3': (-0.757,27.883,-0.891)
OP1: (-4.080,27.456,-4.988)
OP2: (-6.134,27.568,-3.451)
C4: (-6.606,29.584,1.927)
O5': (-3.949,28.577,-2.771)
C3': (-1.943,28.631,-0.665)
C1': (-2.870,30.549,0.334)
O4': (-2.978,30.688,-1.068)
C5': (-2.738,29.281,-3.016)
P: (-4.901,28.181,-3.993)
O2: (-3.494,30.726,2.964)
C4': (-2.108,29.724,-1.710)
C2': (-1.829,29.467,0.599)
O2': (-0.551,30.053,0.728)
N1: (-4.203,30.204,0.873)
N3: (-5.641,30.008,2.743)
N4: (-7.789,29.284,2.472)
C6: (-5.193,29.767,0.041)
C5: (-6.401,29.451,0.522)
O3': (-0.757,27.883,-0.891)
OP1: (8.630,29.447,2.229)
OP2: (7.835,31.441,3.641)
C3': (4.051,30.061,0.486)
C1': (2.409,29.756,2.172)
C5': (5.828,28.766,1.783)
O4': (3.523,28.943,2.488)
C8: (3.446,31.397,3.792)
O2': (1.839,29.265,-0.109)
C6: (0.801,33.363,5.022)
C5: (1.750,32.500,4.443)
C4: (1.278,31.566,3.541)
P: (7.632,30.071,3.126)
C4': (4.385,28.840,1.330)
C2': (2.549,30.173,0.709)
C2: (-0.797,32.258,3.766)
N1: (-0.488,33.210,4.654)
N3: (0.005,31.391,3.153)
N6: (1.114,34.314,5.911)
N7: (3.121,32.383,4.594)
N9: (2.382,30.860,3.124)
O5': (6.214,29.991,2.392)
O3': (4.352,29.783,-0.871)
OP2: (7.835,31.441,3.641)
C3': (4.051,30.061,0.486)
C1': (2.409,29.756,2.172)
C5': (5.828,28.766,1.783)
O4': (3.523,28.943,2.488)
C8: (3.446,31.397,3.792)
O2': (1.839,29.265,-0.109)
C6: (0.801,33.363,5.022)
C5: (1.750,32.500,4.443)
C4: (1.278,31.566,3.541)
P: (7.632,30.071,3.126)
C4': (4.385,28.840,1.330)
C2': (2.549,30.173,0.709)
C2: (-0.797,32.258,3.766)
N1: (-0.488,33.210,4.654)
N3: (0.005,31.391,3.153)
N6: (1.114,34.314,5.911)
N7: (3.121,32.383,4.594)
N9: (2.382,30.860,3.124)
O5': (6.214,29.991,2.392)
O3': (4.352,29.783,-0.871)
Image (generated by PyMOL):