Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3R8S:A580:A513
Extra
PDB:
ATOM 1 O3' U A 579 -62.771 -88.510 14.974 1.00 0.01 O
ATOM 2 P C A 580 -63.128 -88.607 16.515 1.00 0.01 P
ATOM 3 OP1 C A 580 -64.175 -89.609 16.647 1.00 0.01 O
ATOM 4 OP2 C A 580 -63.394 -87.232 16.986 1.00 0.01 O
ATOM 5 O5' C A 580 -61.796 -89.145 17.143 1.00 0.01 O
ATOM 6 C5' C A 580 -61.390 -90.462 16.905 1.00 0.01 C
ATOM 7 C4' C A 580 -60.075 -90.735 17.548 1.00 0.01 C
ATOM 8 O4' C A 580 -59.126 -89.747 17.119 1.00 0.01 O
ATOM 9 C3' C A 580 -60.057 -90.663 19.052 1.00 0.01 C
ATOM 10 O3' C A 580 -60.447 -91.888 19.632 1.00 0.01 O
ATOM 11 C2' C A 580 -58.616 -90.274 19.345 1.00 0.01 C
ATOM 12 O2' C A 580 -57.767 -91.392 19.228 1.00 0.01 O
ATOM 13 C1' C A 580 -58.311 -89.355 18.185 1.00 0.01 C
ATOM 14 N1 C A 580 -58.575 -87.907 18.465 1.00 0.01 N
ATOM 15 C2 C A 580 -57.761 -87.164 19.298 1.00 0.01 C
ATOM 16 O2 C A 580 -56.875 -87.749 19.889 1.00 0.01 O
ATOM 17 N3 C A 580 -57.970 -85.857 19.481 1.00 0.01 N
ATOM 18 C4 C A 580 -58.948 -85.251 18.837 1.00 0.01 C
ATOM 19 N4 C A 580 -59.156 -83.943 19.048 1.00 0.01 N
ATOM 20 C5 C A 580 -59.771 -85.967 17.937 1.00 0.01 C
ATOM 21 C6 C A 580 -59.547 -87.258 17.775 1.00 0.01 C
ATOM 22 P A A 581 -61.419 -91.940 20.890 1.00 0.01 P
ATOM 23 OP1 A A 581 -61.749 -93.345 21.098 1.00 0.01 O
ATOM 24 OP2 A A 581 -62.496 -91.014 20.665 1.00 0.01 O
ATOM 25 O5' A A 581 -60.489 -91.413 22.064 1.00 0.01 O
TER
ATOM 1 O3' A B 512 -55.396 -99.769 20.857 1.00 0.01 O
ATOM 2 P A B 513 -55.211 -99.478 19.298 1.00 0.01 P
ATOM 3 OP1 A B 513 -56.062-100.412 18.595 1.00 0.01 O
ATOM 4 OP2 A B 513 -53.767 -99.470 18.998 1.00 0.01 O
ATOM 5 O5' A B 513 -55.789 -98.041 19.139 1.00 0.01 O
ATOM 6 C5' A B 513 -57.136 -97.801 19.385 1.00 0.01 C
ATOM 7 C4' A B 513 -57.450 -96.366 19.181 1.00 0.01 C
ATOM 8 O4' A B 513 -56.880 -95.579 20.240 1.00 0.01 O
ATOM 9 C3' A B 513 -56.873 -95.729 17.953 1.00 0.01 C
ATOM 10 O3' A B 513 -57.547 -96.122 16.787 1.00 0.01 O
ATOM 11 C2' A B 513 -57.049 -94.270 18.301 1.00 0.01 C
ATOM 12 O2' A B 513 -58.415 -93.906 18.233 1.00 0.01 O
ATOM 13 C1' A B 513 -56.651 -94.285 19.766 1.00 0.01 C
ATOM 14 N9 A B 513 -55.251 -93.987 19.950 1.00 0.01 N
ATOM 15 C8 A B 513 -54.272 -94.895 20.034 1.00 0.01 C
ATOM 16 N7 A B 513 -53.117 -94.340 20.213 1.00 0.01 N
ATOM 17 C5 A B 513 -53.370 -92.978 20.241 1.00 0.01 C
ATOM 18 C6 A B 513 -52.541 -91.863 20.405 1.00 0.01 C
ATOM 19 N6 A B 513 -51.227 -91.945 20.583 1.00 0.01 N
ATOM 20 N1 A B 513 -53.113 -90.661 20.415 1.00 0.01 N
ATOM 21 C2 A B 513 -54.422 -90.603 20.241 1.00 0.01 C
ATOM 22 N3 A B 513 -55.308 -91.566 20.064 1.00 0.01 N
ATOM 23 C4 A B 513 -54.704 -92.752 20.085 1.00 0.01 C
ATOM 24 P A B 514 -56.792 -96.222 15.382 1.00 0.01 P
ATOM 25 OP1 A B 514 -57.618 -97.082 14.521 1.00 0.01 O
ATOM 26 OP2 A B 514 -55.390 -96.600 15.645 1.00 0.01 O
ATOM 27 O5' A B 514 -56.858 -94.754 14.864 1.00 0.01 O
TER
ATOM 2 P C A 580 -63.128 -88.607 16.515 1.00 0.01 P
ATOM 3 OP1 C A 580 -64.175 -89.609 16.647 1.00 0.01 O
ATOM 4 OP2 C A 580 -63.394 -87.232 16.986 1.00 0.01 O
ATOM 5 O5' C A 580 -61.796 -89.145 17.143 1.00 0.01 O
ATOM 6 C5' C A 580 -61.390 -90.462 16.905 1.00 0.01 C
ATOM 7 C4' C A 580 -60.075 -90.735 17.548 1.00 0.01 C
ATOM 8 O4' C A 580 -59.126 -89.747 17.119 1.00 0.01 O
ATOM 9 C3' C A 580 -60.057 -90.663 19.052 1.00 0.01 C
ATOM 10 O3' C A 580 -60.447 -91.888 19.632 1.00 0.01 O
ATOM 11 C2' C A 580 -58.616 -90.274 19.345 1.00 0.01 C
ATOM 12 O2' C A 580 -57.767 -91.392 19.228 1.00 0.01 O
ATOM 13 C1' C A 580 -58.311 -89.355 18.185 1.00 0.01 C
ATOM 14 N1 C A 580 -58.575 -87.907 18.465 1.00 0.01 N
ATOM 15 C2 C A 580 -57.761 -87.164 19.298 1.00 0.01 C
ATOM 16 O2 C A 580 -56.875 -87.749 19.889 1.00 0.01 O
ATOM 17 N3 C A 580 -57.970 -85.857 19.481 1.00 0.01 N
ATOM 18 C4 C A 580 -58.948 -85.251 18.837 1.00 0.01 C
ATOM 19 N4 C A 580 -59.156 -83.943 19.048 1.00 0.01 N
ATOM 20 C5 C A 580 -59.771 -85.967 17.937 1.00 0.01 C
ATOM 21 C6 C A 580 -59.547 -87.258 17.775 1.00 0.01 C
ATOM 22 P A A 581 -61.419 -91.940 20.890 1.00 0.01 P
ATOM 23 OP1 A A 581 -61.749 -93.345 21.098 1.00 0.01 O
ATOM 24 OP2 A A 581 -62.496 -91.014 20.665 1.00 0.01 O
ATOM 25 O5' A A 581 -60.489 -91.413 22.064 1.00 0.01 O
TER
ATOM 1 O3' A B 512 -55.396 -99.769 20.857 1.00 0.01 O
ATOM 2 P A B 513 -55.211 -99.478 19.298 1.00 0.01 P
ATOM 3 OP1 A B 513 -56.062-100.412 18.595 1.00 0.01 O
ATOM 4 OP2 A B 513 -53.767 -99.470 18.998 1.00 0.01 O
ATOM 5 O5' A B 513 -55.789 -98.041 19.139 1.00 0.01 O
ATOM 6 C5' A B 513 -57.136 -97.801 19.385 1.00 0.01 C
ATOM 7 C4' A B 513 -57.450 -96.366 19.181 1.00 0.01 C
ATOM 8 O4' A B 513 -56.880 -95.579 20.240 1.00 0.01 O
ATOM 9 C3' A B 513 -56.873 -95.729 17.953 1.00 0.01 C
ATOM 10 O3' A B 513 -57.547 -96.122 16.787 1.00 0.01 O
ATOM 11 C2' A B 513 -57.049 -94.270 18.301 1.00 0.01 C
ATOM 12 O2' A B 513 -58.415 -93.906 18.233 1.00 0.01 O
ATOM 13 C1' A B 513 -56.651 -94.285 19.766 1.00 0.01 C
ATOM 14 N9 A B 513 -55.251 -93.987 19.950 1.00 0.01 N
ATOM 15 C8 A B 513 -54.272 -94.895 20.034 1.00 0.01 C
ATOM 16 N7 A B 513 -53.117 -94.340 20.213 1.00 0.01 N
ATOM 17 C5 A B 513 -53.370 -92.978 20.241 1.00 0.01 C
ATOM 18 C6 A B 513 -52.541 -91.863 20.405 1.00 0.01 C
ATOM 19 N6 A B 513 -51.227 -91.945 20.583 1.00 0.01 N
ATOM 20 N1 A B 513 -53.113 -90.661 20.415 1.00 0.01 N
ATOM 21 C2 A B 513 -54.422 -90.603 20.241 1.00 0.01 C
ATOM 22 N3 A B 513 -55.308 -91.566 20.064 1.00 0.01 N
ATOM 23 C4 A B 513 -54.704 -92.752 20.085 1.00 0.01 C
ATOM 24 P A B 514 -56.792 -96.222 15.382 1.00 0.01 P
ATOM 25 OP1 A B 514 -57.618 -97.082 14.521 1.00 0.01 O
ATOM 26 OP2 A B 514 -55.390 -96.600 15.645 1.00 0.01 O
ATOM 27 O5' A B 514 -56.858 -94.754 14.864 1.00 0.01 O
TER
Atoms:
C2: (-57.761,-87.164,19.298)
OP1: (-64.175,-89.609,16.647)
OP2: (-63.394,-87.232,16.986)
C4: (-58.948,-85.251,18.837)
O5': (-61.796,-89.145,17.143)
C3': (-60.057,-90.663,19.052)
C1': (-58.311,-89.355,18.185)
O4': (-59.126,-89.747,17.119)
C5': (-61.390,-90.462,16.905)
P: (-63.128,-88.607,16.515)
O2: (-56.875,-87.749,19.889)
C4': (-60.075,-90.735,17.548)
C2': (-58.616,-90.274,19.345)
O2': (-57.767,-91.392,19.228)
N1: (-58.575,-87.907,18.465)
N3: (-57.970,-85.857,19.481)
N4: (-59.156,-83.943,19.048)
C6: (-59.547,-87.258,17.775)
C5: (-59.771,-85.967,17.937)
O3': (-60.447,-91.888,19.632)
OP1: (-64.175,-89.609,16.647)
OP2: (-63.394,-87.232,16.986)
C4: (-58.948,-85.251,18.837)
O5': (-61.796,-89.145,17.143)
C3': (-60.057,-90.663,19.052)
C1': (-58.311,-89.355,18.185)
O4': (-59.126,-89.747,17.119)
C5': (-61.390,-90.462,16.905)
P: (-63.128,-88.607,16.515)
O2: (-56.875,-87.749,19.889)
C4': (-60.075,-90.735,17.548)
C2': (-58.616,-90.274,19.345)
O2': (-57.767,-91.392,19.228)
N1: (-58.575,-87.907,18.465)
N3: (-57.970,-85.857,19.481)
N4: (-59.156,-83.943,19.048)
C6: (-59.547,-87.258,17.775)
C5: (-59.771,-85.967,17.937)
O3': (-60.447,-91.888,19.632)
OP1: (-56.062,-100.412,18.595)
OP2: (-53.767,-99.470,18.998)
C3': (-56.873,-95.729,17.953)
C1': (-56.651,-94.285,19.766)
C5': (-57.136,-97.801,19.385)
O4': (-56.880,-95.579,20.240)
C8: (-54.272,-94.895,20.034)
O2': (-58.415,-93.906,18.233)
C6: (-52.541,-91.863,20.405)
C5: (-53.370,-92.978,20.241)
C4: (-54.704,-92.752,20.085)
P: (-55.211,-99.478,19.298)
C4': (-57.450,-96.366,19.181)
C2': (-57.049,-94.270,18.301)
C2: (-54.422,-90.603,20.241)
N1: (-53.113,-90.661,20.415)
N3: (-55.308,-91.566,20.064)
N6: (-51.227,-91.945,20.583)
N7: (-53.117,-94.340,20.213)
N9: (-55.251,-93.987,19.950)
O5': (-55.789,-98.041,19.139)
O3': (-57.547,-96.122,16.787)
OP2: (-53.767,-99.470,18.998)
C3': (-56.873,-95.729,17.953)
C1': (-56.651,-94.285,19.766)
C5': (-57.136,-97.801,19.385)
O4': (-56.880,-95.579,20.240)
C8: (-54.272,-94.895,20.034)
O2': (-58.415,-93.906,18.233)
C6: (-52.541,-91.863,20.405)
C5: (-53.370,-92.978,20.241)
C4: (-54.704,-92.752,20.085)
P: (-55.211,-99.478,19.298)
C4': (-57.450,-96.366,19.181)
C2': (-57.049,-94.270,18.301)
C2: (-54.422,-90.603,20.241)
N1: (-53.113,-90.661,20.415)
N3: (-55.308,-91.566,20.064)
N6: (-51.227,-91.945,20.583)
N7: (-53.117,-94.340,20.213)
N9: (-55.251,-93.987,19.950)
O5': (-55.789,-98.041,19.139)
O3': (-57.547,-96.122,16.787)
Image (generated by PyMOL):