Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X12:X60
Extra
PDB:
ATOM 1 O3' G A 11 -14.753 -9.019 10.730 1.00 34.54 O
ATOM 2 P C A 12 -13.944 -9.133 12.106 1.00 32.77 P
ATOM 3 OP1 C A 12 -14.909 -9.093 13.219 1.00 33.46 O
ATOM 4 OP2 C A 12 -12.820 -8.174 12.045 1.00 33.88 O
ATOM 5 O5' C A 12 -13.306 -10.597 12.009 1.00 32.32 O
ATOM 6 C5' C A 12 -14.101 -11.760 12.201 1.00 30.36 C
ATOM 7 C4' C A 12 -13.264 -12.980 11.861 1.00 29.81 C
ATOM 8 O4' C A 12 -12.778 -12.868 10.498 1.00 27.79 O
ATOM 9 C3' C A 12 -11.990 -13.112 12.680 1.00 29.57 C
ATOM 10 O3' C A 12 -12.263 -13.707 13.934 1.00 31.55 O
ATOM 11 C2' C A 12 -11.160 -14.024 11.787 1.00 29.07 C
ATOM 12 O2' C A 12 -11.579 -15.374 11.853 1.00 26.66 O
ATOM 13 C1' C A 12 -11.490 -13.444 10.414 1.00 28.56 C
ATOM 14 N1 C A 12 -10.510 -12.424 9.935 1.00 28.68 N
ATOM 15 C2 C A 12 -9.288 -12.878 9.440 1.00 29.04 C
ATOM 16 O2 C A 12 -9.079 -14.098 9.432 1.00 29.41 O
ATOM 17 N3 C A 12 -8.380 -11.974 8.994 1.00 28.07 N
ATOM 18 C4 C A 12 -8.661 -10.671 9.033 1.00 28.16 C
ATOM 19 N4 C A 12 -7.732 -9.820 8.574 1.00 28.76 N
ATOM 20 C5 C A 12 -9.907 -10.184 9.536 1.00 28.39 C
ATOM 21 C6 C A 12 -10.795 -11.087 9.968 1.00 28.27 C
ATOM 22 P C A 13 -11.628 -13.080 15.263 1.00 32.24 P
ATOM 23 OP1 C A 13 -12.497 -13.465 16.394 1.00 32.21 O
ATOM 24 OP2 C A 13 -11.322 -11.656 15.004 1.00 32.95 O
ATOM 25 O5' C A 13 -10.233 -13.855 15.382 1.00 33.47 O
TER
ATOM 1 O3' A B 59 -10.224 -22.796 16.294 1.00 29.62 O
ATOM 2 P A B 60 -11.740 -22.939 15.799 1.00 29.16 P
ATOM 3 OP1 A B 60 -12.564 -23.208 16.995 1.00 30.09 O
ATOM 4 OP2 A B 60 -11.766 -23.877 14.657 1.00 29.82 O
ATOM 5 O5' A B 60 -12.096 -21.484 15.242 1.00 29.35 O
ATOM 6 C5' A B 60 -12.127 -20.367 16.120 1.00 28.32 C
ATOM 7 C4' A B 60 -12.194 -19.079 15.321 1.00 27.85 C
ATOM 8 O4' A B 60 -10.937 -18.858 14.630 1.00 27.47 O
ATOM 9 C3' A B 60 -13.244 -19.067 14.222 1.00 27.63 C
ATOM 10 O3' A B 60 -14.506 -18.708 14.775 1.00 28.19 O
ATOM 11 C2' A B 60 -12.695 -17.975 13.312 1.00 26.72 C
ATOM 12 O2' A B 60 -12.976 -16.685 13.814 1.00 25.34 O
ATOM 13 C1' A B 60 -11.193 -18.235 13.384 1.00 26.67 C
ATOM 14 N9 A B 60 -10.669 -19.070 12.304 1.00 25.90 N
ATOM 15 C8 A B 60 -10.485 -20.425 12.318 1.00 26.45 C
ATOM 16 N7 A B 60 -9.978 -20.905 11.205 1.00 25.65 N
ATOM 17 C5 A B 60 -9.815 -19.783 10.408 1.00 26.29 C
ATOM 18 C6 A B 60 -9.316 -19.619 9.102 1.00 26.47 C
ATOM 19 N6 A B 60 -8.887 -20.643 8.354 1.00 27.05 N
ATOM 20 N1 A B 60 -9.278 -18.367 8.596 1.00 26.64 N
ATOM 21 C2 A B 60 -9.716 -17.352 9.355 1.00 26.28 C
ATOM 22 N3 A B 60 -10.205 -17.388 10.597 1.00 26.24 N
ATOM 23 C4 A B 60 -10.231 -18.645 11.069 1.00 25.74 C
ATOM 24 P U B 61 -15.884 -19.172 14.104 1.00 29.87 P
ATOM 25 OP1 U B 61 -16.964 -18.861 15.070 1.00 29.03 O
ATOM 26 OP2 U B 61 -15.745 -20.556 13.595 1.00 30.07 O
ATOM 27 O5' U B 61 -16.018 -18.172 12.862 1.00 29.24 O
TER
ATOM 2 P C A 12 -13.944 -9.133 12.106 1.00 32.77 P
ATOM 3 OP1 C A 12 -14.909 -9.093 13.219 1.00 33.46 O
ATOM 4 OP2 C A 12 -12.820 -8.174 12.045 1.00 33.88 O
ATOM 5 O5' C A 12 -13.306 -10.597 12.009 1.00 32.32 O
ATOM 6 C5' C A 12 -14.101 -11.760 12.201 1.00 30.36 C
ATOM 7 C4' C A 12 -13.264 -12.980 11.861 1.00 29.81 C
ATOM 8 O4' C A 12 -12.778 -12.868 10.498 1.00 27.79 O
ATOM 9 C3' C A 12 -11.990 -13.112 12.680 1.00 29.57 C
ATOM 10 O3' C A 12 -12.263 -13.707 13.934 1.00 31.55 O
ATOM 11 C2' C A 12 -11.160 -14.024 11.787 1.00 29.07 C
ATOM 12 O2' C A 12 -11.579 -15.374 11.853 1.00 26.66 O
ATOM 13 C1' C A 12 -11.490 -13.444 10.414 1.00 28.56 C
ATOM 14 N1 C A 12 -10.510 -12.424 9.935 1.00 28.68 N
ATOM 15 C2 C A 12 -9.288 -12.878 9.440 1.00 29.04 C
ATOM 16 O2 C A 12 -9.079 -14.098 9.432 1.00 29.41 O
ATOM 17 N3 C A 12 -8.380 -11.974 8.994 1.00 28.07 N
ATOM 18 C4 C A 12 -8.661 -10.671 9.033 1.00 28.16 C
ATOM 19 N4 C A 12 -7.732 -9.820 8.574 1.00 28.76 N
ATOM 20 C5 C A 12 -9.907 -10.184 9.536 1.00 28.39 C
ATOM 21 C6 C A 12 -10.795 -11.087 9.968 1.00 28.27 C
ATOM 22 P C A 13 -11.628 -13.080 15.263 1.00 32.24 P
ATOM 23 OP1 C A 13 -12.497 -13.465 16.394 1.00 32.21 O
ATOM 24 OP2 C A 13 -11.322 -11.656 15.004 1.00 32.95 O
ATOM 25 O5' C A 13 -10.233 -13.855 15.382 1.00 33.47 O
TER
ATOM 1 O3' A B 59 -10.224 -22.796 16.294 1.00 29.62 O
ATOM 2 P A B 60 -11.740 -22.939 15.799 1.00 29.16 P
ATOM 3 OP1 A B 60 -12.564 -23.208 16.995 1.00 30.09 O
ATOM 4 OP2 A B 60 -11.766 -23.877 14.657 1.00 29.82 O
ATOM 5 O5' A B 60 -12.096 -21.484 15.242 1.00 29.35 O
ATOM 6 C5' A B 60 -12.127 -20.367 16.120 1.00 28.32 C
ATOM 7 C4' A B 60 -12.194 -19.079 15.321 1.00 27.85 C
ATOM 8 O4' A B 60 -10.937 -18.858 14.630 1.00 27.47 O
ATOM 9 C3' A B 60 -13.244 -19.067 14.222 1.00 27.63 C
ATOM 10 O3' A B 60 -14.506 -18.708 14.775 1.00 28.19 O
ATOM 11 C2' A B 60 -12.695 -17.975 13.312 1.00 26.72 C
ATOM 12 O2' A B 60 -12.976 -16.685 13.814 1.00 25.34 O
ATOM 13 C1' A B 60 -11.193 -18.235 13.384 1.00 26.67 C
ATOM 14 N9 A B 60 -10.669 -19.070 12.304 1.00 25.90 N
ATOM 15 C8 A B 60 -10.485 -20.425 12.318 1.00 26.45 C
ATOM 16 N7 A B 60 -9.978 -20.905 11.205 1.00 25.65 N
ATOM 17 C5 A B 60 -9.815 -19.783 10.408 1.00 26.29 C
ATOM 18 C6 A B 60 -9.316 -19.619 9.102 1.00 26.47 C
ATOM 19 N6 A B 60 -8.887 -20.643 8.354 1.00 27.05 N
ATOM 20 N1 A B 60 -9.278 -18.367 8.596 1.00 26.64 N
ATOM 21 C2 A B 60 -9.716 -17.352 9.355 1.00 26.28 C
ATOM 22 N3 A B 60 -10.205 -17.388 10.597 1.00 26.24 N
ATOM 23 C4 A B 60 -10.231 -18.645 11.069 1.00 25.74 C
ATOM 24 P U B 61 -15.884 -19.172 14.104 1.00 29.87 P
ATOM 25 OP1 U B 61 -16.964 -18.861 15.070 1.00 29.03 O
ATOM 26 OP2 U B 61 -15.745 -20.556 13.595 1.00 30.07 O
ATOM 27 O5' U B 61 -16.018 -18.172 12.862 1.00 29.24 O
TER
Atoms:
C2: (-9.288,-12.878,9.440)
OP1: (-14.909,-9.093,13.219)
OP2: (-12.820,-8.174,12.045)
C4: (-8.661,-10.671,9.033)
O5': (-13.306,-10.597,12.009)
C3': (-11.990,-13.112,12.680)
C1': (-11.490,-13.444,10.414)
O4': (-12.778,-12.868,10.498)
C5': (-14.101,-11.760,12.201)
P: (-13.944,-9.133,12.106)
O2: (-9.079,-14.098,9.432)
C4': (-13.264,-12.980,11.861)
C2': (-11.160,-14.024,11.787)
O2': (-11.579,-15.374,11.853)
N1: (-10.510,-12.424,9.935)
N3: (-8.380,-11.974,8.994)
N4: (-7.732,-9.820,8.574)
C6: (-10.795,-11.087,9.968)
C5: (-9.907,-10.184,9.536)
O3': (-12.263,-13.707,13.934)
OP1: (-14.909,-9.093,13.219)
OP2: (-12.820,-8.174,12.045)
C4: (-8.661,-10.671,9.033)
O5': (-13.306,-10.597,12.009)
C3': (-11.990,-13.112,12.680)
C1': (-11.490,-13.444,10.414)
O4': (-12.778,-12.868,10.498)
C5': (-14.101,-11.760,12.201)
P: (-13.944,-9.133,12.106)
O2: (-9.079,-14.098,9.432)
C4': (-13.264,-12.980,11.861)
C2': (-11.160,-14.024,11.787)
O2': (-11.579,-15.374,11.853)
N1: (-10.510,-12.424,9.935)
N3: (-8.380,-11.974,8.994)
N4: (-7.732,-9.820,8.574)
C6: (-10.795,-11.087,9.968)
C5: (-9.907,-10.184,9.536)
O3': (-12.263,-13.707,13.934)
OP1: (-12.564,-23.208,16.995)
OP2: (-11.766,-23.877,14.657)
C3': (-13.244,-19.067,14.222)
C1': (-11.193,-18.235,13.384)
C5': (-12.127,-20.367,16.120)
O4': (-10.937,-18.858,14.630)
C8: (-10.485,-20.425,12.318)
O2': (-12.976,-16.685,13.814)
C6: (-9.316,-19.619,9.102)
C5: (-9.815,-19.783,10.408)
C4: (-10.231,-18.645,11.069)
P: (-11.740,-22.939,15.799)
C4': (-12.194,-19.079,15.321)
C2': (-12.695,-17.975,13.312)
C2: (-9.716,-17.352,9.355)
N1: (-9.278,-18.367,8.596)
N3: (-10.205,-17.388,10.597)
N6: (-8.887,-20.643,8.354)
N7: (-9.978,-20.905,11.205)
N9: (-10.669,-19.070,12.304)
O5': (-12.096,-21.484,15.242)
O3': (-14.506,-18.708,14.775)
OP2: (-11.766,-23.877,14.657)
C3': (-13.244,-19.067,14.222)
C1': (-11.193,-18.235,13.384)
C5': (-12.127,-20.367,16.120)
O4': (-10.937,-18.858,14.630)
C8: (-10.485,-20.425,12.318)
O2': (-12.976,-16.685,13.814)
C6: (-9.316,-19.619,9.102)
C5: (-9.815,-19.783,10.408)
C4: (-10.231,-18.645,11.069)
P: (-11.740,-22.939,15.799)
C4': (-12.194,-19.079,15.321)
C2': (-12.695,-17.975,13.312)
C2: (-9.716,-17.352,9.355)
N1: (-9.278,-18.367,8.596)
N3: (-10.205,-17.388,10.597)
N6: (-8.887,-20.643,8.354)
N7: (-9.978,-20.905,11.205)
N9: (-10.669,-19.070,12.304)
O5': (-12.096,-21.484,15.242)
O3': (-14.506,-18.708,14.775)
Image (generated by PyMOL):