Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:01293:01292
Extra
PDB:
ATOM 1 O3' U A1292 9.761 122.912 65.199 1.00 35.95 O
ATOM 2 P C A1293 9.730 124.482 64.885 1.00 38.95 P
ATOM 3 OP1 C A1293 9.169 124.608 63.522 1.00 39.49 O
ATOM 4 OP2 C A1293 11.059 125.056 65.176 1.00 41.53 O
ATOM 5 O5' C A1293 8.724 125.100 65.960 1.00 37.18 O
ATOM 6 C5' C A1293 7.340 124.700 66.015 1.00 37.06 C
ATOM 7 C4' C A1293 6.676 125.260 67.257 1.00 36.82 C
ATOM 8 O4' C A1293 7.336 124.730 68.438 1.00 34.83 O
ATOM 9 C3' C A1293 6.741 126.772 67.436 1.00 36.96 C
ATOM 10 O3' C A1293 5.706 127.446 66.719 1.00 38.05 O
ATOM 11 C2' C A1293 6.578 126.930 68.942 1.00 36.67 C
ATOM 12 O2' C A1293 5.239 126.835 69.380 1.00 38.62 O
ATOM 13 C1' C A1293 7.356 125.719 69.455 1.00 35.88 C
ATOM 14 N1 C A1293 8.757 126.039 69.782 1.00 35.74 N
ATOM 15 C2 C A1293 9.036 126.713 70.983 1.00 36.06 C
ATOM 16 O2 C A1293 8.100 127.026 71.734 1.00 34.31 O
ATOM 17 N3 C A1293 10.318 127.003 71.292 1.00 37.27 N
ATOM 18 C4 C A1293 11.303 126.644 70.465 1.00 36.91 C
ATOM 19 N4 C A1293 12.554 126.936 70.824 1.00 37.08 N
ATOM 20 C5 C A1293 11.049 125.966 69.236 1.00 34.47 C
ATOM 21 C6 C A1293 9.777 125.688 68.937 1.00 35.94 C
ATOM 22 P C A1294 5.812 129.031 66.452 1.00 39.49 P
ATOM 23 OP1 C A1294 4.626 129.426 65.645 1.00 43.04 O
ATOM 24 OP2 C A1294 7.171 129.331 65.935 1.00 40.75 O
ATOM 25 O5' C A1294 5.698 129.696 67.895 1.00 37.55 O
TER
ATOM 1 O3' C B1291 14.800 119.429 65.105 1.00 37.02 O
ATOM 2 P U B1292 14.500 120.970 64.765 1.00 38.20 P
ATOM 3 OP1 U B1292 14.290 121.002 63.297 1.00 39.18 O
ATOM 4 OP2 U B1292 15.527 121.851 65.380 1.00 39.01 O
ATOM 5 O5' U B1292 13.128 121.284 65.514 1.00 39.72 O
ATOM 6 C5' U B1292 11.935 120.527 65.236 1.00 36.85 C
ATOM 7 C4' U B1292 10.825 120.939 66.172 1.00 36.91 C
ATOM 8 O4' U B1292 11.163 120.566 67.532 1.00 37.63 O
ATOM 9 C3' U B1292 10.549 122.429 66.270 1.00 37.27 C
ATOM 10 O3' U B1292 9.761 122.912 65.199 1.00 35.95 O
ATOM 11 C2' U B1292 9.828 122.536 67.606 1.00 38.66 C
ATOM 12 O2' U B1292 8.458 122.200 67.552 1.00 38.87 O
ATOM 13 C1' U B1292 10.587 121.498 68.436 1.00 39.51 C
ATOM 14 N1 U B1292 11.653 122.127 69.231 1.00 41.06 N
ATOM 15 C2 U B1292 11.278 122.745 70.413 1.00 42.78 C
ATOM 16 O2 U B1292 10.132 122.756 70.826 1.00 44.43 O
ATOM 17 N3 U B1292 12.295 123.355 71.095 1.00 44.48 N
ATOM 18 C4 U B1292 13.622 123.407 70.736 1.00 43.71 C
ATOM 19 O4 U B1292 14.415 124.015 71.460 1.00 43.97 O
ATOM 20 C5 U B1292 13.938 122.729 69.514 1.00 41.07 C
ATOM 21 C6 U B1292 12.968 122.126 68.822 1.00 40.11 C
ATOM 22 P C B1293 9.730 124.482 64.885 1.00 38.95 P
ATOM 23 OP1 C B1293 9.169 124.608 63.522 1.00 39.49 O
ATOM 24 OP2 C B1293 11.059 125.056 65.176 1.00 41.53 O
ATOM 25 O5' C B1293 8.724 125.100 65.960 1.00 37.18 O
TER
ATOM 2 P C A1293 9.730 124.482 64.885 1.00 38.95 P
ATOM 3 OP1 C A1293 9.169 124.608 63.522 1.00 39.49 O
ATOM 4 OP2 C A1293 11.059 125.056 65.176 1.00 41.53 O
ATOM 5 O5' C A1293 8.724 125.100 65.960 1.00 37.18 O
ATOM 6 C5' C A1293 7.340 124.700 66.015 1.00 37.06 C
ATOM 7 C4' C A1293 6.676 125.260 67.257 1.00 36.82 C
ATOM 8 O4' C A1293 7.336 124.730 68.438 1.00 34.83 O
ATOM 9 C3' C A1293 6.741 126.772 67.436 1.00 36.96 C
ATOM 10 O3' C A1293 5.706 127.446 66.719 1.00 38.05 O
ATOM 11 C2' C A1293 6.578 126.930 68.942 1.00 36.67 C
ATOM 12 O2' C A1293 5.239 126.835 69.380 1.00 38.62 O
ATOM 13 C1' C A1293 7.356 125.719 69.455 1.00 35.88 C
ATOM 14 N1 C A1293 8.757 126.039 69.782 1.00 35.74 N
ATOM 15 C2 C A1293 9.036 126.713 70.983 1.00 36.06 C
ATOM 16 O2 C A1293 8.100 127.026 71.734 1.00 34.31 O
ATOM 17 N3 C A1293 10.318 127.003 71.292 1.00 37.27 N
ATOM 18 C4 C A1293 11.303 126.644 70.465 1.00 36.91 C
ATOM 19 N4 C A1293 12.554 126.936 70.824 1.00 37.08 N
ATOM 20 C5 C A1293 11.049 125.966 69.236 1.00 34.47 C
ATOM 21 C6 C A1293 9.777 125.688 68.937 1.00 35.94 C
ATOM 22 P C A1294 5.812 129.031 66.452 1.00 39.49 P
ATOM 23 OP1 C A1294 4.626 129.426 65.645 1.00 43.04 O
ATOM 24 OP2 C A1294 7.171 129.331 65.935 1.00 40.75 O
ATOM 25 O5' C A1294 5.698 129.696 67.895 1.00 37.55 O
TER
ATOM 1 O3' C B1291 14.800 119.429 65.105 1.00 37.02 O
ATOM 2 P U B1292 14.500 120.970 64.765 1.00 38.20 P
ATOM 3 OP1 U B1292 14.290 121.002 63.297 1.00 39.18 O
ATOM 4 OP2 U B1292 15.527 121.851 65.380 1.00 39.01 O
ATOM 5 O5' U B1292 13.128 121.284 65.514 1.00 39.72 O
ATOM 6 C5' U B1292 11.935 120.527 65.236 1.00 36.85 C
ATOM 7 C4' U B1292 10.825 120.939 66.172 1.00 36.91 C
ATOM 8 O4' U B1292 11.163 120.566 67.532 1.00 37.63 O
ATOM 9 C3' U B1292 10.549 122.429 66.270 1.00 37.27 C
ATOM 10 O3' U B1292 9.761 122.912 65.199 1.00 35.95 O
ATOM 11 C2' U B1292 9.828 122.536 67.606 1.00 38.66 C
ATOM 12 O2' U B1292 8.458 122.200 67.552 1.00 38.87 O
ATOM 13 C1' U B1292 10.587 121.498 68.436 1.00 39.51 C
ATOM 14 N1 U B1292 11.653 122.127 69.231 1.00 41.06 N
ATOM 15 C2 U B1292 11.278 122.745 70.413 1.00 42.78 C
ATOM 16 O2 U B1292 10.132 122.756 70.826 1.00 44.43 O
ATOM 17 N3 U B1292 12.295 123.355 71.095 1.00 44.48 N
ATOM 18 C4 U B1292 13.622 123.407 70.736 1.00 43.71 C
ATOM 19 O4 U B1292 14.415 124.015 71.460 1.00 43.97 O
ATOM 20 C5 U B1292 13.938 122.729 69.514 1.00 41.07 C
ATOM 21 C6 U B1292 12.968 122.126 68.822 1.00 40.11 C
ATOM 22 P C B1293 9.730 124.482 64.885 1.00 38.95 P
ATOM 23 OP1 C B1293 9.169 124.608 63.522 1.00 39.49 O
ATOM 24 OP2 C B1293 11.059 125.056 65.176 1.00 41.53 O
ATOM 25 O5' C B1293 8.724 125.100 65.960 1.00 37.18 O
TER
Atoms:
C2: (9.036,126.713,70.983)
OP1: (9.169,124.608,63.522)
OP2: (11.059,125.056,65.176)
C4: (11.303,126.644,70.465)
O5': (8.724,125.100,65.960)
C3': (6.741,126.772,67.436)
C1': (7.356,125.719,69.455)
O4': (7.336,124.730,68.438)
C5': (7.340,124.700,66.015)
P: (9.730,124.482,64.885)
O2: (8.100,127.026,71.734)
C4': (6.676,125.260,67.257)
C2': (6.578,126.930,68.942)
O2': (5.239,126.835,69.380)
N1: (8.757,126.039,69.782)
N3: (10.318,127.003,71.292)
N4: (12.554,126.936,70.824)
C6: (9.777,125.688,68.937)
C5: (11.049,125.966,69.236)
O3': (5.706,127.446,66.719)
OP1: (9.169,124.608,63.522)
OP2: (11.059,125.056,65.176)
C4: (11.303,126.644,70.465)
O5': (8.724,125.100,65.960)
C3': (6.741,126.772,67.436)
C1': (7.356,125.719,69.455)
O4': (7.336,124.730,68.438)
C5': (7.340,124.700,66.015)
P: (9.730,124.482,64.885)
O2: (8.100,127.026,71.734)
C4': (6.676,125.260,67.257)
C2': (6.578,126.930,68.942)
O2': (5.239,126.835,69.380)
N1: (8.757,126.039,69.782)
N3: (10.318,127.003,71.292)
N4: (12.554,126.936,70.824)
C6: (9.777,125.688,68.937)
C5: (11.049,125.966,69.236)
O3': (5.706,127.446,66.719)
C4: (13.622,123.407,70.736)
N3: (12.295,123.355,71.095)
OP1: (14.290,121.002,63.297)
OP2: (15.527,121.851,65.380)
C2: (11.278,122.745,70.413)
C1': (10.587,121.498,68.436)
C3': (10.549,122.429,66.270)
O5': (13.128,121.284,65.514)
O4': (11.163,120.566,67.532)
C5': (11.935,120.527,65.236)
P: (14.500,120.970,64.765)
C4': (10.825,120.939,66.172)
C2': (9.828,122.536,67.606)
O2': (8.458,122.200,67.552)
N1: (11.653,122.127,69.231)
O4: (14.415,124.015,71.460)
O2: (10.132,122.756,70.826)
C6: (12.968,122.126,68.822)
C5: (13.938,122.729,69.514)
O3': (9.761,122.912,65.199)
N3: (12.295,123.355,71.095)
OP1: (14.290,121.002,63.297)
OP2: (15.527,121.851,65.380)
C2: (11.278,122.745,70.413)
C1': (10.587,121.498,68.436)
C3': (10.549,122.429,66.270)
O5': (13.128,121.284,65.514)
O4': (11.163,120.566,67.532)
C5': (11.935,120.527,65.236)
P: (14.500,120.970,64.765)
C4': (10.825,120.939,66.172)
C2': (9.828,122.536,67.606)
O2': (8.458,122.200,67.552)
N1: (11.653,122.127,69.231)
O4: (14.415,124.015,71.460)
O2: (10.132,122.756,70.826)
C6: (12.968,122.126,68.822)
C5: (13.938,122.729,69.514)
O3': (9.761,122.912,65.199)
Image (generated by PyMOL):