Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VQF:A1040:A1039
Extra
PDB:
ATOM 1 O3' U A1039 208.882 124.606 -3.201 1.00 70.69 O
ATOM 2 P C A1040 209.314 125.983 -3.897 1.00 68.44 P
ATOM 3 OP1 C A1040 210.562 125.681 -4.656 1.00 67.35 O
ATOM 4 OP2 C A1040 209.312 127.054 -2.877 1.00 69.98 O
ATOM 5 O5' C A1040 208.130 126.298 -4.920 1.00 67.45 O
ATOM 6 C5' C A1040 208.143 125.780 -6.267 1.00 63.93 C
ATOM 7 C4' C A1040 206.732 125.522 -6.753 1.00 59.03 C
ATOM 8 O4' C A1040 206.084 124.655 -5.775 1.00 59.70 O
ATOM 9 C3' C A1040 205.824 126.738 -6.906 1.00 55.93 C
ATOM 10 O3' C A1040 205.920 127.399 -8.193 1.00 41.82 O
ATOM 11 C2' C A1040 204.443 126.133 -6.663 1.00 58.76 C
ATOM 12 O2' C A1040 203.941 125.571 -7.850 1.00 61.58 O
ATOM 13 C1' C A1040 204.728 125.029 -5.623 1.00 62.63 C
ATOM 14 N1 C A1040 204.541 125.448 -4.208 1.00 70.45 N
ATOM 15 C2 C A1040 203.232 125.620 -3.674 1.00 74.81 C
ATOM 16 O2 C A1040 202.239 125.338 -4.371 1.00 78.15 O
ATOM 17 N3 C A1040 203.095 126.091 -2.402 1.00 76.75 N
ATOM 18 C4 C A1040 204.182 126.374 -1.669 1.00 77.20 C
ATOM 19 N4 C A1040 204.010 126.872 -0.434 1.00 76.45 N
ATOM 20 C5 C A1040 205.500 126.168 -2.167 1.00 76.77 C
ATOM 21 C6 C A1040 205.632 125.704 -3.423 1.00 74.19 C
TER
ATOM 1 O3' G B1038 211.787 125.777 2.148 1.00 74.53 O
ATOM 2 P U B1039 211.267 126.752 0.977 1.00 76.11 P
ATOM 3 OP1 U B1039 212.474 127.068 0.152 1.00 76.73 O
ATOM 4 OP2 U B1039 210.475 127.880 1.548 1.00 74.89 O
ATOM 5 O5' U B1039 210.295 125.823 0.115 1.00 75.71 O
ATOM 6 C5' U B1039 210.771 124.631 -0.541 1.00 74.49 C
ATOM 7 C4' U B1039 209.602 123.811 -1.027 1.00 74.65 C
ATOM 8 O4' U B1039 208.875 123.295 0.118 1.00 77.50 O
ATOM 9 C3' U B1039 208.569 124.586 -1.833 1.00 73.69 C
ATOM 10 O3' U B1039 208.882 124.606 -3.201 1.00 70.69 O
ATOM 11 C2' U B1039 207.291 123.801 -1.596 1.00 76.41 C
ATOM 12 O2' U B1039 207.136 122.723 -2.499 1.00 77.44 O
ATOM 13 C1' U B1039 207.479 123.307 -0.157 1.00 78.67 C
ATOM 14 N1 U B1039 206.795 124.168 0.831 1.00 80.99 N
ATOM 15 C2 U B1039 205.414 124.045 0.957 1.00 82.50 C
ATOM 16 O2 U B1039 204.756 123.241 0.321 1.00 85.19 O
ATOM 17 N3 U B1039 204.832 124.898 1.861 1.00 83.00 N
ATOM 18 C4 U B1039 205.463 125.830 2.650 1.00 82.05 C
ATOM 19 O4 U B1039 204.807 126.455 3.478 1.00 80.93 O
ATOM 20 C5 U B1039 206.880 125.894 2.479 1.00 82.61 C
ATOM 21 C6 U B1039 207.484 125.081 1.601 1.00 81.55 C
ATOM 22 P C B1040 209.314 125.983 -3.897 1.00 68.44 P
ATOM 23 OP1 C B1040 210.562 125.681 -4.656 1.00 67.35 O
ATOM 24 OP2 C B1040 209.312 127.054 -2.877 1.00 69.98 O
ATOM 25 O5' C B1040 208.130 126.298 -4.920 1.00 67.45 O
TER
ATOM 2 P C A1040 209.314 125.983 -3.897 1.00 68.44 P
ATOM 3 OP1 C A1040 210.562 125.681 -4.656 1.00 67.35 O
ATOM 4 OP2 C A1040 209.312 127.054 -2.877 1.00 69.98 O
ATOM 5 O5' C A1040 208.130 126.298 -4.920 1.00 67.45 O
ATOM 6 C5' C A1040 208.143 125.780 -6.267 1.00 63.93 C
ATOM 7 C4' C A1040 206.732 125.522 -6.753 1.00 59.03 C
ATOM 8 O4' C A1040 206.084 124.655 -5.775 1.00 59.70 O
ATOM 9 C3' C A1040 205.824 126.738 -6.906 1.00 55.93 C
ATOM 10 O3' C A1040 205.920 127.399 -8.193 1.00 41.82 O
ATOM 11 C2' C A1040 204.443 126.133 -6.663 1.00 58.76 C
ATOM 12 O2' C A1040 203.941 125.571 -7.850 1.00 61.58 O
ATOM 13 C1' C A1040 204.728 125.029 -5.623 1.00 62.63 C
ATOM 14 N1 C A1040 204.541 125.448 -4.208 1.00 70.45 N
ATOM 15 C2 C A1040 203.232 125.620 -3.674 1.00 74.81 C
ATOM 16 O2 C A1040 202.239 125.338 -4.371 1.00 78.15 O
ATOM 17 N3 C A1040 203.095 126.091 -2.402 1.00 76.75 N
ATOM 18 C4 C A1040 204.182 126.374 -1.669 1.00 77.20 C
ATOM 19 N4 C A1040 204.010 126.872 -0.434 1.00 76.45 N
ATOM 20 C5 C A1040 205.500 126.168 -2.167 1.00 76.77 C
ATOM 21 C6 C A1040 205.632 125.704 -3.423 1.00 74.19 C
TER
ATOM 1 O3' G B1038 211.787 125.777 2.148 1.00 74.53 O
ATOM 2 P U B1039 211.267 126.752 0.977 1.00 76.11 P
ATOM 3 OP1 U B1039 212.474 127.068 0.152 1.00 76.73 O
ATOM 4 OP2 U B1039 210.475 127.880 1.548 1.00 74.89 O
ATOM 5 O5' U B1039 210.295 125.823 0.115 1.00 75.71 O
ATOM 6 C5' U B1039 210.771 124.631 -0.541 1.00 74.49 C
ATOM 7 C4' U B1039 209.602 123.811 -1.027 1.00 74.65 C
ATOM 8 O4' U B1039 208.875 123.295 0.118 1.00 77.50 O
ATOM 9 C3' U B1039 208.569 124.586 -1.833 1.00 73.69 C
ATOM 10 O3' U B1039 208.882 124.606 -3.201 1.00 70.69 O
ATOM 11 C2' U B1039 207.291 123.801 -1.596 1.00 76.41 C
ATOM 12 O2' U B1039 207.136 122.723 -2.499 1.00 77.44 O
ATOM 13 C1' U B1039 207.479 123.307 -0.157 1.00 78.67 C
ATOM 14 N1 U B1039 206.795 124.168 0.831 1.00 80.99 N
ATOM 15 C2 U B1039 205.414 124.045 0.957 1.00 82.50 C
ATOM 16 O2 U B1039 204.756 123.241 0.321 1.00 85.19 O
ATOM 17 N3 U B1039 204.832 124.898 1.861 1.00 83.00 N
ATOM 18 C4 U B1039 205.463 125.830 2.650 1.00 82.05 C
ATOM 19 O4 U B1039 204.807 126.455 3.478 1.00 80.93 O
ATOM 20 C5 U B1039 206.880 125.894 2.479 1.00 82.61 C
ATOM 21 C6 U B1039 207.484 125.081 1.601 1.00 81.55 C
ATOM 22 P C B1040 209.314 125.983 -3.897 1.00 68.44 P
ATOM 23 OP1 C B1040 210.562 125.681 -4.656 1.00 67.35 O
ATOM 24 OP2 C B1040 209.312 127.054 -2.877 1.00 69.98 O
ATOM 25 O5' C B1040 208.130 126.298 -4.920 1.00 67.45 O
TER
Atoms:
C2: (203.232,125.620,-3.674)
OP1: (210.562,125.681,-4.656)
OP2: (209.312,127.054,-2.877)
C4: (204.182,126.374,-1.669)
O5': (208.130,126.298,-4.920)
C3': (205.824,126.738,-6.906)
C1': (204.728,125.029,-5.623)
O4': (206.084,124.655,-5.775)
C5': (208.143,125.780,-6.267)
P: (209.314,125.983,-3.897)
O2: (202.239,125.338,-4.371)
C4': (206.732,125.522,-6.753)
C2': (204.443,126.133,-6.663)
O2': (203.941,125.571,-7.850)
N1: (204.541,125.448,-4.208)
N3: (203.095,126.091,-2.402)
N4: (204.010,126.872,-0.434)
C6: (205.632,125.704,-3.423)
C5: (205.500,126.168,-2.167)
O3': (205.920,127.399,-8.193)
OP1: (210.562,125.681,-4.656)
OP2: (209.312,127.054,-2.877)
C4: (204.182,126.374,-1.669)
O5': (208.130,126.298,-4.920)
C3': (205.824,126.738,-6.906)
C1': (204.728,125.029,-5.623)
O4': (206.084,124.655,-5.775)
C5': (208.143,125.780,-6.267)
P: (209.314,125.983,-3.897)
O2: (202.239,125.338,-4.371)
C4': (206.732,125.522,-6.753)
C2': (204.443,126.133,-6.663)
O2': (203.941,125.571,-7.850)
N1: (204.541,125.448,-4.208)
N3: (203.095,126.091,-2.402)
N4: (204.010,126.872,-0.434)
C6: (205.632,125.704,-3.423)
C5: (205.500,126.168,-2.167)
O3': (205.920,127.399,-8.193)
C4: (205.463,125.830,2.650)
N3: (204.832,124.898,1.861)
OP1: (212.474,127.068,0.152)
OP2: (210.475,127.880,1.548)
C2: (205.414,124.045,0.957)
C1': (207.479,123.307,-0.157)
C3': (208.569,124.586,-1.833)
O5': (210.295,125.823,0.115)
O4': (208.875,123.295,0.118)
C5': (210.771,124.631,-0.541)
P: (211.267,126.752,0.977)
C4': (209.602,123.811,-1.027)
C2': (207.291,123.801,-1.596)
O2': (207.136,122.723,-2.499)
N1: (206.795,124.168,0.831)
O4: (204.807,126.455,3.478)
O2: (204.756,123.241,0.321)
C6: (207.484,125.081,1.601)
C5: (206.880,125.894,2.479)
O3': (208.882,124.606,-3.201)
N3: (204.832,124.898,1.861)
OP1: (212.474,127.068,0.152)
OP2: (210.475,127.880,1.548)
C2: (205.414,124.045,0.957)
C1': (207.479,123.307,-0.157)
C3': (208.569,124.586,-1.833)
O5': (210.295,125.823,0.115)
O4': (208.875,123.295,0.118)
C5': (210.771,124.631,-0.541)
P: (211.267,126.752,0.977)
C4': (209.602,123.811,-1.027)
C2': (207.291,123.801,-1.596)
O2': (207.136,122.723,-2.499)
N1: (206.795,124.168,0.831)
O4: (204.807,126.455,3.478)
O2: (204.756,123.241,0.321)
C6: (207.484,125.081,1.601)
C5: (206.880,125.894,2.479)
O3': (208.882,124.606,-3.201)
Image (generated by PyMOL):