ClaRNA

Doublet info:

Details

Nucleotide types: CU
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 1M5O:E43:E42

Extra

PDB:
ATOM 1 O3' U A 42 36.244 20.874 105.018 1.00101.74 O
ATOM 2 P C A 43 35.953 22.134 104.061 1.00 83.37 P
ATOM 3 OP1 C A 43 36.747 21.950 102.820 1.00 84.42 O
ATOM 4 OP2 C A 43 36.141 23.360 104.875 1.00 94.30 O
ATOM 5 O5' C A 43 34.402 22.022 103.706 1.00 83.30 O
ATOM 6 C5' C A 43 33.412 22.039 104.730 1.00 80.97 C
ATOM 7 C4' C A 43 32.361 20.987 104.458 1.00 81.21 C
ATOM 8 O4' C A 43 31.835 20.526 105.732 1.00 66.75 O
ATOM 9 C3' C A 43 31.137 21.453 103.687 1.00 70.02 C
ATOM 10 O3' C A 43 31.001 21.449 102.278 1.00 71.28 O
ATOM 11 C2' C A 43 30.020 21.727 104.677 1.00 80.99 C
ATOM 12 O2' C A 43 28.820 21.093 104.275 1.00 75.32 O
ATOM 13 C1' C A 43 30.517 21.026 105.941 1.00 85.26 C
ATOM 14 N1 C A 43 30.565 22.002 107.044 1.00 85.35 N
ATOM 15 C2 C A 43 29.365 22.387 107.672 1.00 84.61 C
ATOM 16 O2 C A 43 28.291 21.883 107.294 1.00 82.02 O
ATOM 17 N3 C A 43 29.410 23.299 108.671 1.00 87.44 N
ATOM 18 C4 C A 43 30.584 23.821 109.050 1.00 89.52 C
ATOM 19 N4 C A 43 30.582 24.718 110.039 1.00 93.03 N
ATOM 20 C5 C A 43 31.812 23.446 108.432 1.00 88.69 C
ATOM 21 C6 C A 43 31.757 22.542 107.446 1.00 87.56 C
ATOM 22 P C A 44 31.003 22.851 101.494 1.00 51.07 P
ATOM 23 OP1 C A 44 30.946 22.592 100.036 1.00 56.61 O
ATOM 24 OP2 C A 44 32.114 23.668 102.050 1.00 59.18 O
ATOM 25 O5' C A 44 29.646 23.542 101.943 1.00 49.71 O
TER

ATOM 1 O3' C B 41 40.330 21.942 104.242 1.00 61.95 O
ATOM 2 P U B 42 40.432 22.530 105.737 1.00 68.97 P
ATOM 3 OP1 U B 42 39.646 23.786 105.814 1.00 91.33 O
ATOM 4 OP2 U B 42 41.872 22.546 106.085 1.00 79.33 O
ATOM 5 O5' U B 42 39.723 21.429 106.650 1.00 89.68 O
ATOM 6 C5' U B 42 38.568 21.720 107.461 1.00 89.71 C
ATOM 7 C4' U B 42 37.541 20.626 107.266 1.00103.33 C
ATOM 8 O4' U B 42 36.949 20.265 108.554 1.00104.38 O
ATOM 9 C3' U B 42 36.365 21.084 106.415 1.00103.31 C
ATOM 10 O3' U B 42 36.244 20.874 105.018 1.00101.74 O
ATOM 11 C2' U B 42 35.197 21.392 107.333 1.00109.07 C
ATOM 12 O2' U B 42 34.006 20.804 106.856 1.00 93.28 O
ATOM 13 C1' U B 42 35.574 20.629 108.597 1.00110.16 C
ATOM 14 N1 U B 42 35.270 21.403 109.809 1.00110.48 N
ATOM 15 C2 U B 42 34.042 21.165 110.409 1.00110.23 C
ATOM 16 O2 U B 42 33.259 20.321 110.001 1.00106.57 O
ATOM 17 N3 U B 42 33.763 21.952 111.498 1.00111.33 N
ATOM 18 C4 U B 42 34.568 22.928 112.043 1.00111.72 C
ATOM 19 O4 U B 42 34.173 23.559 113.025 1.00111.33 O
ATOM 20 C5 U B 42 35.826 23.102 111.379 1.00111.33 C
ATOM 21 C6 U B 42 36.130 22.347 110.314 1.00111.03 C
ATOM 22 P C B 43 35.953 22.134 104.061 1.00 83.37 P
ATOM 23 OP1 C B 43 36.747 21.950 102.820 1.00 84.42 O
ATOM 24 OP2 C B 43 36.141 23.360 104.875 1.00 94.30 O
ATOM 25 O5' C B 43 34.402 22.022 103.706 1.00 83.30 O
TER

Atoms:
C2: (29.365,22.387,107.672)
OP1: (36.747,21.950,102.820)
OP2: (36.141,23.360,104.875)
C4: (30.584,23.821,109.050)
O5': (34.402,22.022,103.706)
C3': (31.137,21.453,103.687)
C1': (30.517,21.026,105.941)
O4': (31.835,20.526,105.732)
C5': (33.412,22.039,104.730)
P: (35.953,22.134,104.061)
O2: (28.291,21.883,107.294)
C4': (32.361,20.987,104.458)
C2': (30.020,21.727,104.677)
O2': (28.820,21.093,104.275)
N1: (30.565,22.002,107.044)
N3: (29.410,23.299,108.671)
N4: (30.582,24.718,110.039)
C6: (31.757,22.542,107.446)
C5: (31.812,23.446,108.432)
O3': (31.001,21.449,102.278)
C4: (34.568,22.928,112.043)
N3: (33.763,21.952,111.498)
OP1: (39.646,23.786,105.814)
OP2: (41.872,22.546,106.085)
C2: (34.042,21.165,110.409)
C1': (35.574,20.629,108.597)
C3': (36.365,21.084,106.415)
O5': (39.723,21.429,106.650)
O4': (36.949,20.265,108.554)
C5': (38.568,21.720,107.461)
P: (40.432,22.530,105.737)
C4': (37.541,20.626,107.266)
C2': (35.197,21.392,107.333)
O2': (34.006,20.804,106.856)
N1: (35.270,21.403,109.809)
O4: (34.173,23.559,113.025)
O2: (33.259,20.321,110.001)
C6: (36.130,22.347,110.314)
C5: (35.826,23.102,111.379)
O3': (36.244,20.874,105.018)
Image (generated by PyMOL):
PyMOL image
show in jmol