Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1M5K:B43:B42
Extra
PDB:
ATOM 1 O3' U A 42 48.511 22.912 42.771 1.00119.20 O
ATOM 2 P C A 43 49.127 21.950 43.900 1.00129.21 P
ATOM 3 OP1 C A 43 48.381 20.665 43.856 1.00123.03 O
ATOM 4 OP2 C A 43 49.129 22.753 45.153 1.00136.04 O
ATOM 5 O5' C A 43 50.643 21.662 43.511 1.00106.65 O
ATOM 6 C5' C A 43 51.243 20.447 43.945 1.00 93.85 C
ATOM 7 C4' C A 43 52.717 20.621 44.227 1.00 85.19 C
ATOM 8 O4' C A 43 53.474 20.606 42.996 1.00 81.52 O
ATOM 9 C3' C A 43 53.205 21.870 44.941 1.00 74.90 C
ATOM 10 O3' C A 43 52.962 21.808 46.349 1.00 83.94 O
ATOM 11 C2' C A 43 54.704 21.810 44.642 1.00 91.03 C
ATOM 12 O2' C A 43 55.417 20.943 45.508 1.00 68.45 O
ATOM 13 C1' C A 43 54.723 21.238 43.217 1.00 87.94 C
ATOM 14 N1 C A 43 54.911 22.271 42.193 1.00 90.70 N
ATOM 15 C2 C A 43 56.210 22.672 41.872 1.00 91.54 C
ATOM 16 O2 C A 43 57.168 22.118 42.435 1.00 88.67 O
ATOM 17 N3 C A 43 56.389 23.649 40.956 1.00 99.10 N
ATOM 18 C4 C A 43 55.332 24.212 40.364 1.00102.05 C
ATOM 19 N4 C A 43 55.555 25.178 39.471 1.00103.74 N
ATOM 20 C5 C A 43 53.999 23.810 40.663 1.00100.39 C
ATOM 21 C6 C A 43 53.836 22.844 41.573 1.00 95.29 C
ATOM 22 P C A 44 52.735 23.169 47.189 1.00 83.31 P
ATOM 23 OP1 C A 44 52.530 22.810 48.611 1.00 73.33 O
ATOM 24 OP2 C A 44 51.720 23.994 46.484 1.00 88.23 O
ATOM 25 O5' C A 44 54.131 23.925 47.102 1.00 77.73 O
TER
ATOM 1 O3' C B 41 44.589 22.111 41.699 1.00 75.03 O
ATOM 2 P U B 42 44.809 22.718 40.230 1.00 83.54 P
ATOM 3 OP1 U B 42 44.703 24.200 40.285 1.00 89.48 O
ATOM 4 OP2 U B 42 43.921 21.948 39.320 1.00 83.75 O
ATOM 5 O5' U B 42 46.320 22.352 39.916 1.00 89.21 O
ATOM 6 C5' U B 42 46.920 21.227 40.530 1.00106.69 C
ATOM 7 C4' U B 42 48.398 21.454 40.702 1.00125.36 C
ATOM 8 O4' U B 42 49.012 21.597 39.381 1.00137.13 O
ATOM 9 C3' U B 42 48.826 22.740 41.389 1.00127.16 C
ATOM 10 O3' U B 42 48.511 22.912 42.771 1.00119.20 O
ATOM 11 C2' U B 42 50.256 22.859 40.905 1.00130.99 C
ATOM 12 O2' U B 42 51.120 21.852 41.389 1.00115.12 O
ATOM 13 C1' U B 42 50.007 22.621 39.420 1.00139.41 C
ATOM 14 N1 U B 42 49.419 23.854 38.870 1.00145.42 N
ATOM 15 C2 U B 42 50.198 24.998 38.905 1.00146.54 C
ATOM 16 O2 U B 42 51.346 25.004 39.314 1.00147.81 O
ATOM 17 N3 U B 42 49.580 26.136 38.451 1.00145.64 N
ATOM 18 C4 U B 42 48.295 26.246 37.966 1.00143.79 C
ATOM 19 O4 U B 42 47.877 27.349 37.612 1.00143.60 O
ATOM 20 C5 U B 42 47.560 25.018 37.936 1.00141.76 C
ATOM 21 C6 U B 42 48.134 23.890 38.371 1.00142.75 C
ATOM 22 P C B 43 49.127 21.950 43.900 1.00129.21 P
ATOM 23 OP1 C B 43 48.381 20.665 43.856 1.00123.03 O
ATOM 24 OP2 C B 43 49.129 22.753 45.153 1.00136.04 O
ATOM 25 O5' C B 43 50.643 21.662 43.511 1.00106.65 O
TER
ATOM 2 P C A 43 49.127 21.950 43.900 1.00129.21 P
ATOM 3 OP1 C A 43 48.381 20.665 43.856 1.00123.03 O
ATOM 4 OP2 C A 43 49.129 22.753 45.153 1.00136.04 O
ATOM 5 O5' C A 43 50.643 21.662 43.511 1.00106.65 O
ATOM 6 C5' C A 43 51.243 20.447 43.945 1.00 93.85 C
ATOM 7 C4' C A 43 52.717 20.621 44.227 1.00 85.19 C
ATOM 8 O4' C A 43 53.474 20.606 42.996 1.00 81.52 O
ATOM 9 C3' C A 43 53.205 21.870 44.941 1.00 74.90 C
ATOM 10 O3' C A 43 52.962 21.808 46.349 1.00 83.94 O
ATOM 11 C2' C A 43 54.704 21.810 44.642 1.00 91.03 C
ATOM 12 O2' C A 43 55.417 20.943 45.508 1.00 68.45 O
ATOM 13 C1' C A 43 54.723 21.238 43.217 1.00 87.94 C
ATOM 14 N1 C A 43 54.911 22.271 42.193 1.00 90.70 N
ATOM 15 C2 C A 43 56.210 22.672 41.872 1.00 91.54 C
ATOM 16 O2 C A 43 57.168 22.118 42.435 1.00 88.67 O
ATOM 17 N3 C A 43 56.389 23.649 40.956 1.00 99.10 N
ATOM 18 C4 C A 43 55.332 24.212 40.364 1.00102.05 C
ATOM 19 N4 C A 43 55.555 25.178 39.471 1.00103.74 N
ATOM 20 C5 C A 43 53.999 23.810 40.663 1.00100.39 C
ATOM 21 C6 C A 43 53.836 22.844 41.573 1.00 95.29 C
ATOM 22 P C A 44 52.735 23.169 47.189 1.00 83.31 P
ATOM 23 OP1 C A 44 52.530 22.810 48.611 1.00 73.33 O
ATOM 24 OP2 C A 44 51.720 23.994 46.484 1.00 88.23 O
ATOM 25 O5' C A 44 54.131 23.925 47.102 1.00 77.73 O
TER
ATOM 1 O3' C B 41 44.589 22.111 41.699 1.00 75.03 O
ATOM 2 P U B 42 44.809 22.718 40.230 1.00 83.54 P
ATOM 3 OP1 U B 42 44.703 24.200 40.285 1.00 89.48 O
ATOM 4 OP2 U B 42 43.921 21.948 39.320 1.00 83.75 O
ATOM 5 O5' U B 42 46.320 22.352 39.916 1.00 89.21 O
ATOM 6 C5' U B 42 46.920 21.227 40.530 1.00106.69 C
ATOM 7 C4' U B 42 48.398 21.454 40.702 1.00125.36 C
ATOM 8 O4' U B 42 49.012 21.597 39.381 1.00137.13 O
ATOM 9 C3' U B 42 48.826 22.740 41.389 1.00127.16 C
ATOM 10 O3' U B 42 48.511 22.912 42.771 1.00119.20 O
ATOM 11 C2' U B 42 50.256 22.859 40.905 1.00130.99 C
ATOM 12 O2' U B 42 51.120 21.852 41.389 1.00115.12 O
ATOM 13 C1' U B 42 50.007 22.621 39.420 1.00139.41 C
ATOM 14 N1 U B 42 49.419 23.854 38.870 1.00145.42 N
ATOM 15 C2 U B 42 50.198 24.998 38.905 1.00146.54 C
ATOM 16 O2 U B 42 51.346 25.004 39.314 1.00147.81 O
ATOM 17 N3 U B 42 49.580 26.136 38.451 1.00145.64 N
ATOM 18 C4 U B 42 48.295 26.246 37.966 1.00143.79 C
ATOM 19 O4 U B 42 47.877 27.349 37.612 1.00143.60 O
ATOM 20 C5 U B 42 47.560 25.018 37.936 1.00141.76 C
ATOM 21 C6 U B 42 48.134 23.890 38.371 1.00142.75 C
ATOM 22 P C B 43 49.127 21.950 43.900 1.00129.21 P
ATOM 23 OP1 C B 43 48.381 20.665 43.856 1.00123.03 O
ATOM 24 OP2 C B 43 49.129 22.753 45.153 1.00136.04 O
ATOM 25 O5' C B 43 50.643 21.662 43.511 1.00106.65 O
TER
Atoms:
C2: (56.210,22.672,41.872)
OP1: (48.381,20.665,43.856)
OP2: (49.129,22.753,45.153)
C4: (55.332,24.212,40.364)
O5': (50.643,21.662,43.511)
C3': (53.205,21.870,44.941)
C1': (54.723,21.238,43.217)
O4': (53.474,20.606,42.996)
C5': (51.243,20.447,43.945)
P: (49.127,21.950,43.900)
O2: (57.168,22.118,42.435)
C4': (52.717,20.621,44.227)
C2': (54.704,21.810,44.642)
O2': (55.417,20.943,45.508)
N1: (54.911,22.271,42.193)
N3: (56.389,23.649,40.956)
N4: (55.555,25.178,39.471)
C6: (53.836,22.844,41.573)
C5: (53.999,23.810,40.663)
O3': (52.962,21.808,46.349)
OP1: (48.381,20.665,43.856)
OP2: (49.129,22.753,45.153)
C4: (55.332,24.212,40.364)
O5': (50.643,21.662,43.511)
C3': (53.205,21.870,44.941)
C1': (54.723,21.238,43.217)
O4': (53.474,20.606,42.996)
C5': (51.243,20.447,43.945)
P: (49.127,21.950,43.900)
O2: (57.168,22.118,42.435)
C4': (52.717,20.621,44.227)
C2': (54.704,21.810,44.642)
O2': (55.417,20.943,45.508)
N1: (54.911,22.271,42.193)
N3: (56.389,23.649,40.956)
N4: (55.555,25.178,39.471)
C6: (53.836,22.844,41.573)
C5: (53.999,23.810,40.663)
O3': (52.962,21.808,46.349)
C4: (48.295,26.246,37.966)
N3: (49.580,26.136,38.451)
OP1: (44.703,24.200,40.285)
OP2: (43.921,21.948,39.320)
C2: (50.198,24.998,38.905)
C1': (50.007,22.621,39.420)
C3': (48.826,22.740,41.389)
O5': (46.320,22.352,39.916)
O4': (49.012,21.597,39.381)
C5': (46.920,21.227,40.530)
P: (44.809,22.718,40.230)
C4': (48.398,21.454,40.702)
C2': (50.256,22.859,40.905)
O2': (51.120,21.852,41.389)
N1: (49.419,23.854,38.870)
O4: (47.877,27.349,37.612)
O2: (51.346,25.004,39.314)
C6: (48.134,23.890,38.371)
C5: (47.560,25.018,37.936)
O3': (48.511,22.912,42.771)
N3: (49.580,26.136,38.451)
OP1: (44.703,24.200,40.285)
OP2: (43.921,21.948,39.320)
C2: (50.198,24.998,38.905)
C1': (50.007,22.621,39.420)
C3': (48.826,22.740,41.389)
O5': (46.320,22.352,39.916)
O4': (49.012,21.597,39.381)
C5': (46.920,21.227,40.530)
P: (44.809,22.718,40.230)
C4': (48.398,21.454,40.702)
C2': (50.256,22.859,40.905)
O2': (51.120,21.852,41.389)
N1: (49.419,23.854,38.870)
O4: (47.877,27.349,37.612)
O2: (51.346,25.004,39.314)
C6: (48.134,23.890,38.371)
C5: (47.560,25.018,37.936)
O3': (48.511,22.912,42.771)
Image (generated by PyMOL):