Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1D4R:B8:B7
Extra
PDB:
ATOM 1 O3' U A 7 35.913 -13.092 -19.167 1.00 49.52 O
ATOM 2 P C A 8 35.593 -12.444 -17.732 1.00 55.78 P
ATOM 3 OP1 C A 8 36.828 -12.595 -16.919 1.00 50.99 O
ATOM 4 OP2 C A 8 34.302 -12.960 -17.213 1.00 52.61 O
ATOM 5 O5' C A 8 35.390 -10.895 -18.048 1.00 51.66 O
ATOM 6 C5' C A 8 36.432 -10.142 -18.657 1.00 48.64 C
ATOM 7 C4' C A 8 35.981 -8.723 -18.885 1.00 52.21 C
ATOM 8 O4' C A 8 35.113 -8.657 -20.047 1.00 50.38 O
ATOM 9 C3' C A 8 35.151 -8.085 -17.781 1.00 47.60 C
ATOM 10 O3' C A 8 35.990 -7.605 -16.747 1.00 48.72 O
ATOM 11 C2' C A 8 34.496 -6.942 -18.540 1.00 44.31 C
ATOM 12 O2' C A 8 35.384 -5.884 -18.809 1.00 37.78 O
ATOM 13 C1' C A 8 34.137 -7.644 -19.846 1.00 48.49 C
ATOM 14 N1 C A 8 32.807 -8.266 -19.770 1.00 48.33 N
ATOM 15 C2 C A 8 31.679 -7.452 -19.976 1.00 51.24 C
ATOM 16 O2 C A 8 31.847 -6.233 -20.190 1.00 45.17 O
ATOM 17 N3 C A 8 30.447 -8.005 -19.923 1.00 43.88 N
ATOM 18 C4 C A 8 30.312 -9.304 -19.650 1.00 47.25 C
ATOM 19 N4 C A 8 29.080 -9.805 -19.598 1.00 38.07 N
ATOM 20 C5 C A 8 31.441 -10.150 -19.419 1.00 50.89 C
ATOM 21 C6 C A 8 32.657 -9.597 -19.497 1.00 46.41 C
ATOM 22 P C A 9 35.428 -7.495 -15.253 1.00 55.83 P
ATOM 23 OP1 C A 9 36.605 -7.102 -14.434 1.00 52.20 O
ATOM 24 OP2 C A 9 34.657 -8.718 -14.911 1.00 49.42 O
ATOM 25 O5' C A 9 34.404 -6.270 -15.297 1.00 47.66 O
TER
ATOM 1 O3' C B 6 33.806 -18.648 -21.086 1.00 55.82 O
ATOM 2 P U B 7 33.765 -17.816 -19.723 1.00 59.79 P
ATOM 3 OP1 U B 7 34.928 -18.270 -18.915 1.00 64.74 O
ATOM 4 OP2 U B 7 32.394 -17.895 -19.155 1.00 53.94 O
ATOM 5 O5' U B 7 34.036 -16.310 -20.172 1.00 56.97 O
ATOM 6 C5' U B 7 35.327 -15.900 -20.612 1.00 55.49 C
ATOM 7 C4' U B 7 35.293 -14.462 -21.070 1.00 53.69 C
ATOM 8 O4' U B 7 34.319 -14.311 -22.137 1.00 51.10 O
ATOM 9 C3' U B 7 34.844 -13.448 -20.030 1.00 53.33 C
ATOM 10 O3' U B 7 35.913 -13.092 -19.167 1.00 49.52 O
ATOM 11 C2' U B 7 34.420 -12.276 -20.905 1.00 49.83 C
ATOM 12 O2' U B 7 35.521 -11.510 -21.356 1.00 47.15 O
ATOM 13 C1' U B 7 33.757 -13.007 -22.077 1.00 49.70 C
ATOM 14 N1 U B 7 32.293 -13.111 -21.959 1.00 44.33 N
ATOM 15 C2 U B 7 31.551 -11.997 -22.327 1.00 52.39 C
ATOM 16 O2 U B 7 32.066 -10.964 -22.722 1.00 38.10 O
ATOM 17 N3 U B 7 30.190 -12.139 -22.210 1.00 43.31 N
ATOM 18 C4 U B 7 29.507 -13.253 -21.772 1.00 53.64 C
ATOM 19 O4 U B 7 28.274 -13.244 -21.760 1.00 42.80 O
ATOM 20 C5 U B 7 30.342 -14.357 -21.403 1.00 46.54 C
ATOM 21 C6 U B 7 31.672 -14.248 -21.508 1.00 47.34 C
ATOM 22 P C B 8 35.593 -12.444 -17.732 1.00 55.78 P
ATOM 23 OP1 C B 8 36.828 -12.595 -16.919 1.00 50.99 O
ATOM 24 OP2 C B 8 34.302 -12.960 -17.213 1.00 52.61 O
ATOM 25 O5' C B 8 35.390 -10.895 -18.048 1.00 51.66 O
TER
ATOM 2 P C A 8 35.593 -12.444 -17.732 1.00 55.78 P
ATOM 3 OP1 C A 8 36.828 -12.595 -16.919 1.00 50.99 O
ATOM 4 OP2 C A 8 34.302 -12.960 -17.213 1.00 52.61 O
ATOM 5 O5' C A 8 35.390 -10.895 -18.048 1.00 51.66 O
ATOM 6 C5' C A 8 36.432 -10.142 -18.657 1.00 48.64 C
ATOM 7 C4' C A 8 35.981 -8.723 -18.885 1.00 52.21 C
ATOM 8 O4' C A 8 35.113 -8.657 -20.047 1.00 50.38 O
ATOM 9 C3' C A 8 35.151 -8.085 -17.781 1.00 47.60 C
ATOM 10 O3' C A 8 35.990 -7.605 -16.747 1.00 48.72 O
ATOM 11 C2' C A 8 34.496 -6.942 -18.540 1.00 44.31 C
ATOM 12 O2' C A 8 35.384 -5.884 -18.809 1.00 37.78 O
ATOM 13 C1' C A 8 34.137 -7.644 -19.846 1.00 48.49 C
ATOM 14 N1 C A 8 32.807 -8.266 -19.770 1.00 48.33 N
ATOM 15 C2 C A 8 31.679 -7.452 -19.976 1.00 51.24 C
ATOM 16 O2 C A 8 31.847 -6.233 -20.190 1.00 45.17 O
ATOM 17 N3 C A 8 30.447 -8.005 -19.923 1.00 43.88 N
ATOM 18 C4 C A 8 30.312 -9.304 -19.650 1.00 47.25 C
ATOM 19 N4 C A 8 29.080 -9.805 -19.598 1.00 38.07 N
ATOM 20 C5 C A 8 31.441 -10.150 -19.419 1.00 50.89 C
ATOM 21 C6 C A 8 32.657 -9.597 -19.497 1.00 46.41 C
ATOM 22 P C A 9 35.428 -7.495 -15.253 1.00 55.83 P
ATOM 23 OP1 C A 9 36.605 -7.102 -14.434 1.00 52.20 O
ATOM 24 OP2 C A 9 34.657 -8.718 -14.911 1.00 49.42 O
ATOM 25 O5' C A 9 34.404 -6.270 -15.297 1.00 47.66 O
TER
ATOM 1 O3' C B 6 33.806 -18.648 -21.086 1.00 55.82 O
ATOM 2 P U B 7 33.765 -17.816 -19.723 1.00 59.79 P
ATOM 3 OP1 U B 7 34.928 -18.270 -18.915 1.00 64.74 O
ATOM 4 OP2 U B 7 32.394 -17.895 -19.155 1.00 53.94 O
ATOM 5 O5' U B 7 34.036 -16.310 -20.172 1.00 56.97 O
ATOM 6 C5' U B 7 35.327 -15.900 -20.612 1.00 55.49 C
ATOM 7 C4' U B 7 35.293 -14.462 -21.070 1.00 53.69 C
ATOM 8 O4' U B 7 34.319 -14.311 -22.137 1.00 51.10 O
ATOM 9 C3' U B 7 34.844 -13.448 -20.030 1.00 53.33 C
ATOM 10 O3' U B 7 35.913 -13.092 -19.167 1.00 49.52 O
ATOM 11 C2' U B 7 34.420 -12.276 -20.905 1.00 49.83 C
ATOM 12 O2' U B 7 35.521 -11.510 -21.356 1.00 47.15 O
ATOM 13 C1' U B 7 33.757 -13.007 -22.077 1.00 49.70 C
ATOM 14 N1 U B 7 32.293 -13.111 -21.959 1.00 44.33 N
ATOM 15 C2 U B 7 31.551 -11.997 -22.327 1.00 52.39 C
ATOM 16 O2 U B 7 32.066 -10.964 -22.722 1.00 38.10 O
ATOM 17 N3 U B 7 30.190 -12.139 -22.210 1.00 43.31 N
ATOM 18 C4 U B 7 29.507 -13.253 -21.772 1.00 53.64 C
ATOM 19 O4 U B 7 28.274 -13.244 -21.760 1.00 42.80 O
ATOM 20 C5 U B 7 30.342 -14.357 -21.403 1.00 46.54 C
ATOM 21 C6 U B 7 31.672 -14.248 -21.508 1.00 47.34 C
ATOM 22 P C B 8 35.593 -12.444 -17.732 1.00 55.78 P
ATOM 23 OP1 C B 8 36.828 -12.595 -16.919 1.00 50.99 O
ATOM 24 OP2 C B 8 34.302 -12.960 -17.213 1.00 52.61 O
ATOM 25 O5' C B 8 35.390 -10.895 -18.048 1.00 51.66 O
TER
Atoms:
C2: (31.679,-7.452,-19.976)
OP1: (36.828,-12.595,-16.919)
OP2: (34.302,-12.960,-17.213)
C4: (30.312,-9.304,-19.650)
O5': (35.390,-10.895,-18.048)
C3': (35.151,-8.085,-17.781)
C1': (34.137,-7.644,-19.846)
O4': (35.113,-8.657,-20.047)
C5': (36.432,-10.142,-18.657)
P: (35.593,-12.444,-17.732)
O2: (31.847,-6.233,-20.190)
C4': (35.981,-8.723,-18.885)
C2': (34.496,-6.942,-18.540)
O2': (35.384,-5.884,-18.809)
N1: (32.807,-8.266,-19.770)
N3: (30.447,-8.005,-19.923)
N4: (29.080,-9.805,-19.598)
C6: (32.657,-9.597,-19.497)
C5: (31.441,-10.150,-19.419)
O3': (35.990,-7.605,-16.747)
OP1: (36.828,-12.595,-16.919)
OP2: (34.302,-12.960,-17.213)
C4: (30.312,-9.304,-19.650)
O5': (35.390,-10.895,-18.048)
C3': (35.151,-8.085,-17.781)
C1': (34.137,-7.644,-19.846)
O4': (35.113,-8.657,-20.047)
C5': (36.432,-10.142,-18.657)
P: (35.593,-12.444,-17.732)
O2: (31.847,-6.233,-20.190)
C4': (35.981,-8.723,-18.885)
C2': (34.496,-6.942,-18.540)
O2': (35.384,-5.884,-18.809)
N1: (32.807,-8.266,-19.770)
N3: (30.447,-8.005,-19.923)
N4: (29.080,-9.805,-19.598)
C6: (32.657,-9.597,-19.497)
C5: (31.441,-10.150,-19.419)
O3': (35.990,-7.605,-16.747)
C4: (29.507,-13.253,-21.772)
N3: (30.190,-12.139,-22.210)
OP1: (34.928,-18.270,-18.915)
OP2: (32.394,-17.895,-19.155)
C2: (31.551,-11.997,-22.327)
C1': (33.757,-13.007,-22.077)
C3': (34.844,-13.448,-20.030)
O5': (34.036,-16.310,-20.172)
O4': (34.319,-14.311,-22.137)
C5': (35.327,-15.900,-20.612)
P: (33.765,-17.816,-19.723)
C4': (35.293,-14.462,-21.070)
C2': (34.420,-12.276,-20.905)
O2': (35.521,-11.510,-21.356)
N1: (32.293,-13.111,-21.959)
O4: (28.274,-13.244,-21.760)
O2: (32.066,-10.964,-22.722)
C6: (31.672,-14.248,-21.508)
C5: (30.342,-14.357,-21.403)
O3': (35.913,-13.092,-19.167)
N3: (30.190,-12.139,-22.210)
OP1: (34.928,-18.270,-18.915)
OP2: (32.394,-17.895,-19.155)
C2: (31.551,-11.997,-22.327)
C1': (33.757,-13.007,-22.077)
C3': (34.844,-13.448,-20.030)
O5': (34.036,-16.310,-20.172)
O4': (34.319,-14.311,-22.137)
C5': (35.327,-15.900,-20.612)
P: (33.765,-17.816,-19.723)
C4': (35.293,-14.462,-21.070)
C2': (34.420,-12.276,-20.905)
O2': (35.521,-11.510,-21.356)
N1: (32.293,-13.111,-21.959)
O4: (28.274,-13.244,-21.760)
O2: (32.066,-10.964,-22.722)
C6: (31.672,-14.248,-21.508)
C5: (30.342,-14.357,-21.403)
O3': (35.913,-13.092,-19.167)
Image (generated by PyMOL):