Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1I9V:A48:A6
Extra
PDB:
ATOM 1 O3' C A 47 11.055 -6.431 -0.675 1.00 27.09 O
ATOM 2 P C A 48 10.486 -6.074 -2.129 1.00 25.33 P
ATOM 3 OP1 C A 48 11.188 -6.938 -3.119 1.00 26.73 O
ATOM 4 OP2 C A 48 10.544 -4.629 -2.253 1.00 24.52 O
ATOM 5 O5' C A 48 8.967 -6.552 -2.166 1.00 27.47 O
ATOM 6 C5' C A 48 8.032 -6.215 -1.143 1.00 28.31 C
ATOM 7 C4' C A 48 6.658 -6.723 -1.517 1.00 27.55 C
ATOM 8 O4' C A 48 6.124 -5.907 -2.588 1.00 27.63 O
ATOM 9 C3' C A 48 6.650 -8.135 -2.092 1.00 27.02 C
ATOM 10 O3' C A 48 6.586 -9.138 -1.094 1.00 28.75 O
ATOM 11 C2' C A 48 5.401 -8.146 -2.934 1.00 25.57 C
ATOM 12 O2' C A 48 4.312 -8.333 -2.060 1.00 26.52 O
ATOM 13 C1' C A 48 5.430 -6.727 -3.514 1.00 24.99 C
ATOM 14 N1 C A 48 6.155 -6.653 -4.791 1.00 23.67 N
ATOM 15 C2 C A 48 5.562 -7.214 -5.952 1.00 20.79 C
ATOM 16 O2 C A 48 4.509 -7.836 -5.849 1.00 19.98 O
ATOM 17 N3 C A 48 6.178 -7.088 -7.134 1.00 19.25 N
ATOM 18 C4 C A 48 7.388 -6.501 -7.204 1.00 20.73 C
ATOM 19 N4 C A 48 7.994 -6.450 -8.415 1.00 19.00 N
ATOM 20 C5 C A 48 8.039 -5.954 -6.043 1.00 19.16 C
ATOM 21 C6 C A 48 7.384 -6.043 -4.868 1.00 20.97 C
ATOM 22 P U A 49 7.245 -10.569 -1.385 1.00 29.44 P
ATOM 23 OP1 U A 49 7.354 -11.304 -0.130 1.00 30.78 O
ATOM 24 OP2 U A 49 8.462 -10.285 -2.174 1.00 31.24 O
ATOM 25 O5' U A 49 6.180 -11.342 -2.277 1.00 30.52 O
TER
ATOM 1 O3' U B 5 11.578 2.463 -5.494 1.00 41.70 O
ATOM 2 P U B 6 12.349 1.097 -4.926 1.00 33.26 P
ATOM 3 OP1 U B 6 13.221 1.712 -3.893 1.00 36.81 O
ATOM 4 OP2 U B 6 12.940 0.103 -5.867 1.00 33.13 O
ATOM 5 O5' U B 6 11.235 0.229 -4.181 1.00 34.99 O
ATOM 6 C5' U B 6 10.412 0.802 -3.171 1.00 32.14 C
ATOM 7 C4' U B 6 9.214 -0.081 -2.885 1.00 30.68 C
ATOM 8 O4' U B 6 8.410 -0.226 -4.087 1.00 30.95 O
ATOM 9 C3' U B 6 9.487 -1.488 -2.375 1.00 29.90 C
ATOM 10 O3' U B 6 8.568 -1.716 -1.317 1.00 29.86 O
ATOM 11 C2' U B 6 9.218 -2.365 -3.607 1.00 31.07 C
ATOM 12 O2' U B 6 8.740 -3.693 -3.395 1.00 30.76 O
ATOM 13 C1' U B 6 8.110 -1.594 -4.299 1.00 31.32 C
ATOM 14 N1 U B 6 8.066 -1.879 -5.743 1.00 29.61 N
ATOM 15 C2 U B 6 6.972 -2.570 -6.229 1.00 28.86 C
ATOM 16 O2 U B 6 6.034 -2.912 -5.536 1.00 28.52 O
ATOM 17 N3 U B 6 7.017 -2.842 -7.562 1.00 30.74 N
ATOM 18 C4 U B 6 8.016 -2.505 -8.441 1.00 29.96 C
ATOM 19 O4 U B 6 8.000 -2.980 -9.569 1.00 31.28 O
ATOM 20 C5 U B 6 9.082 -1.764 -7.873 1.00 28.66 C
ATOM 21 C6 U B 6 9.075 -1.485 -6.576 1.00 27.78 C
ATOM 22 P U B 7 8.910 -1.171 0.175 1.00 29.64 P
ATOM 23 OP1 U B 7 7.815 -1.657 1.044 1.00 26.35 O
ATOM 24 OP2 U B 7 9.222 0.268 0.084 1.00 28.99 O
ATOM 25 O5' U B 7 10.209 -1.982 0.526 1.00 29.68 O
TER
ATOM 2 P C A 48 10.486 -6.074 -2.129 1.00 25.33 P
ATOM 3 OP1 C A 48 11.188 -6.938 -3.119 1.00 26.73 O
ATOM 4 OP2 C A 48 10.544 -4.629 -2.253 1.00 24.52 O
ATOM 5 O5' C A 48 8.967 -6.552 -2.166 1.00 27.47 O
ATOM 6 C5' C A 48 8.032 -6.215 -1.143 1.00 28.31 C
ATOM 7 C4' C A 48 6.658 -6.723 -1.517 1.00 27.55 C
ATOM 8 O4' C A 48 6.124 -5.907 -2.588 1.00 27.63 O
ATOM 9 C3' C A 48 6.650 -8.135 -2.092 1.00 27.02 C
ATOM 10 O3' C A 48 6.586 -9.138 -1.094 1.00 28.75 O
ATOM 11 C2' C A 48 5.401 -8.146 -2.934 1.00 25.57 C
ATOM 12 O2' C A 48 4.312 -8.333 -2.060 1.00 26.52 O
ATOM 13 C1' C A 48 5.430 -6.727 -3.514 1.00 24.99 C
ATOM 14 N1 C A 48 6.155 -6.653 -4.791 1.00 23.67 N
ATOM 15 C2 C A 48 5.562 -7.214 -5.952 1.00 20.79 C
ATOM 16 O2 C A 48 4.509 -7.836 -5.849 1.00 19.98 O
ATOM 17 N3 C A 48 6.178 -7.088 -7.134 1.00 19.25 N
ATOM 18 C4 C A 48 7.388 -6.501 -7.204 1.00 20.73 C
ATOM 19 N4 C A 48 7.994 -6.450 -8.415 1.00 19.00 N
ATOM 20 C5 C A 48 8.039 -5.954 -6.043 1.00 19.16 C
ATOM 21 C6 C A 48 7.384 -6.043 -4.868 1.00 20.97 C
ATOM 22 P U A 49 7.245 -10.569 -1.385 1.00 29.44 P
ATOM 23 OP1 U A 49 7.354 -11.304 -0.130 1.00 30.78 O
ATOM 24 OP2 U A 49 8.462 -10.285 -2.174 1.00 31.24 O
ATOM 25 O5' U A 49 6.180 -11.342 -2.277 1.00 30.52 O
TER
ATOM 1 O3' U B 5 11.578 2.463 -5.494 1.00 41.70 O
ATOM 2 P U B 6 12.349 1.097 -4.926 1.00 33.26 P
ATOM 3 OP1 U B 6 13.221 1.712 -3.893 1.00 36.81 O
ATOM 4 OP2 U B 6 12.940 0.103 -5.867 1.00 33.13 O
ATOM 5 O5' U B 6 11.235 0.229 -4.181 1.00 34.99 O
ATOM 6 C5' U B 6 10.412 0.802 -3.171 1.00 32.14 C
ATOM 7 C4' U B 6 9.214 -0.081 -2.885 1.00 30.68 C
ATOM 8 O4' U B 6 8.410 -0.226 -4.087 1.00 30.95 O
ATOM 9 C3' U B 6 9.487 -1.488 -2.375 1.00 29.90 C
ATOM 10 O3' U B 6 8.568 -1.716 -1.317 1.00 29.86 O
ATOM 11 C2' U B 6 9.218 -2.365 -3.607 1.00 31.07 C
ATOM 12 O2' U B 6 8.740 -3.693 -3.395 1.00 30.76 O
ATOM 13 C1' U B 6 8.110 -1.594 -4.299 1.00 31.32 C
ATOM 14 N1 U B 6 8.066 -1.879 -5.743 1.00 29.61 N
ATOM 15 C2 U B 6 6.972 -2.570 -6.229 1.00 28.86 C
ATOM 16 O2 U B 6 6.034 -2.912 -5.536 1.00 28.52 O
ATOM 17 N3 U B 6 7.017 -2.842 -7.562 1.00 30.74 N
ATOM 18 C4 U B 6 8.016 -2.505 -8.441 1.00 29.96 C
ATOM 19 O4 U B 6 8.000 -2.980 -9.569 1.00 31.28 O
ATOM 20 C5 U B 6 9.082 -1.764 -7.873 1.00 28.66 C
ATOM 21 C6 U B 6 9.075 -1.485 -6.576 1.00 27.78 C
ATOM 22 P U B 7 8.910 -1.171 0.175 1.00 29.64 P
ATOM 23 OP1 U B 7 7.815 -1.657 1.044 1.00 26.35 O
ATOM 24 OP2 U B 7 9.222 0.268 0.084 1.00 28.99 O
ATOM 25 O5' U B 7 10.209 -1.982 0.526 1.00 29.68 O
TER
Atoms:
C2: (5.562,-7.214,-5.952)
OP1: (11.188,-6.938,-3.119)
OP2: (10.544,-4.629,-2.253)
C4: (7.388,-6.501,-7.204)
O5': (8.967,-6.552,-2.166)
C3': (6.650,-8.135,-2.092)
C1': (5.430,-6.727,-3.514)
O4': (6.124,-5.907,-2.588)
C5': (8.032,-6.215,-1.143)
P: (10.486,-6.074,-2.129)
O2: (4.509,-7.836,-5.849)
C4': (6.658,-6.723,-1.517)
C2': (5.401,-8.146,-2.934)
O2': (4.312,-8.333,-2.060)
N1: (6.155,-6.653,-4.791)
N3: (6.178,-7.088,-7.134)
N4: (7.994,-6.450,-8.415)
C6: (7.384,-6.043,-4.868)
C5: (8.039,-5.954,-6.043)
O3': (6.586,-9.138,-1.094)
OP1: (11.188,-6.938,-3.119)
OP2: (10.544,-4.629,-2.253)
C4: (7.388,-6.501,-7.204)
O5': (8.967,-6.552,-2.166)
C3': (6.650,-8.135,-2.092)
C1': (5.430,-6.727,-3.514)
O4': (6.124,-5.907,-2.588)
C5': (8.032,-6.215,-1.143)
P: (10.486,-6.074,-2.129)
O2: (4.509,-7.836,-5.849)
C4': (6.658,-6.723,-1.517)
C2': (5.401,-8.146,-2.934)
O2': (4.312,-8.333,-2.060)
N1: (6.155,-6.653,-4.791)
N3: (6.178,-7.088,-7.134)
N4: (7.994,-6.450,-8.415)
C6: (7.384,-6.043,-4.868)
C5: (8.039,-5.954,-6.043)
O3': (6.586,-9.138,-1.094)
C4: (8.016,-2.505,-8.441)
N3: (7.017,-2.842,-7.562)
OP1: (13.221,1.712,-3.893)
OP2: (12.940,0.103,-5.867)
C2: (6.972,-2.570,-6.229)
C1': (8.110,-1.594,-4.299)
C3': (9.487,-1.488,-2.375)
O5': (11.235,0.229,-4.181)
O4': (8.410,-0.226,-4.087)
C5': (10.412,0.802,-3.171)
P: (12.349,1.097,-4.926)
C4': (9.214,-0.081,-2.885)
C2': (9.218,-2.365,-3.607)
O2': (8.740,-3.693,-3.395)
N1: (8.066,-1.879,-5.743)
O4: (8.000,-2.980,-9.569)
O2: (6.034,-2.912,-5.536)
C6: (9.075,-1.485,-6.576)
C5: (9.082,-1.764,-7.873)
O3': (8.568,-1.716,-1.317)
N3: (7.017,-2.842,-7.562)
OP1: (13.221,1.712,-3.893)
OP2: (12.940,0.103,-5.867)
C2: (6.972,-2.570,-6.229)
C1': (8.110,-1.594,-4.299)
C3': (9.487,-1.488,-2.375)
O5': (11.235,0.229,-4.181)
O4': (8.410,-0.226,-4.087)
C5': (10.412,0.802,-3.171)
P: (12.349,1.097,-4.926)
C4': (9.214,-0.081,-2.885)
C2': (9.218,-2.365,-3.607)
O2': (8.740,-3.693,-3.395)
N1: (8.066,-1.879,-5.743)
O4: (8.000,-2.980,-9.569)
O2: (6.034,-2.912,-5.536)
C6: (9.075,-1.485,-6.576)
C5: (9.082,-1.764,-7.873)
O3': (8.568,-1.716,-1.317)
Image (generated by PyMOL):