Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1110:1109
Extra
PDB:
ATOM 1 O3' U A 109 60.094 -42.419 139.603 1.00 66.39 O
ATOM 2 P C A 110 59.446 -43.220 140.832 1.00 60.73 P
ATOM 3 OP1 C A 110 60.231 -42.856 142.053 1.00 61.36 O
ATOM 4 OP2 C A 110 59.371 -44.661 140.444 1.00 60.82 O
ATOM 5 O5' C A 110 57.984 -42.584 140.908 1.00 60.43 O
ATOM 6 C5' C A 110 56.825 -43.389 140.952 1.00 60.45 C
ATOM 7 C4' C A 110 55.670 -42.691 140.291 1.00 59.85 C
ATOM 8 O4' C A 110 55.735 -42.899 138.868 1.00 59.24 O
ATOM 9 C3' C A 110 54.289 -43.180 140.675 1.00 59.96 C
ATOM 10 O3' C A 110 53.819 -42.618 141.877 1.00 60.36 O
ATOM 11 C2' C A 110 53.432 -42.821 139.470 1.00 59.22 C
ATOM 12 O2' C A 110 52.938 -41.489 139.579 1.00 58.96 O
ATOM 13 C1' C A 110 54.446 -42.893 138.320 1.00 58.82 C
ATOM 14 N1 C A 110 54.294 -44.092 137.498 1.00 58.67 N
ATOM 15 C2 C A 110 53.091 -44.318 136.837 1.00 58.28 C
ATOM 16 O2 C A 110 52.158 -43.504 136.995 1.00 58.08 O
ATOM 17 N3 C A 110 52.990 -45.418 136.038 1.00 58.14 N
ATOM 18 C4 C A 110 54.039 -46.253 135.897 1.00 58.37 C
ATOM 19 N4 C A 110 53.904 -47.346 135.130 1.00 58.26 N
ATOM 20 C5 C A 110 55.280 -46.013 136.561 1.00 58.77 C
ATOM 21 C6 C A 110 55.356 -44.930 137.340 1.00 58.90 C
ATOM 22 P A A 111 53.153 -43.563 142.977 1.00 61.52 P
ATOM 23 OP1 A A 111 52.758 -42.697 144.085 1.00 61.85 O
ATOM 24 OP2 A A 111 54.093 -44.687 143.226 1.00 61.98 O
ATOM 25 O5' A A 111 51.860 -44.101 142.266 1.00 61.14 O
TER
ATOM 1 O3' C B 108 64.504 -44.907 135.764 1.00 61.10 O
ATOM 2 P U B 109 63.457 -45.230 136.927 1.00 66.24 P
ATOM 3 OP1 U B 109 64.109 -44.884 138.214 1.00 66.87 O
ATOM 4 OP2 U B 109 62.995 -46.616 136.718 1.00 66.37 O
ATOM 5 O5' U B 109 62.277 -44.200 136.630 1.00 65.70 O
ATOM 6 C5' U B 109 62.448 -42.795 136.825 1.00 65.54 C
ATOM 7 C4' U B 109 61.277 -42.204 137.543 1.00 65.57 C
ATOM 8 O4' U B 109 60.196 -41.928 136.575 1.00 64.92 O
ATOM 9 C3' U B 109 60.700 -43.141 138.569 1.00 66.14 C
ATOM 10 O3' U B 109 60.094 -42.419 139.603 1.00 66.39 O
ATOM 11 C2' U B 109 59.635 -43.844 137.773 1.00 65.76 C
ATOM 12 O2' U B 109 58.650 -44.519 138.535 1.00 66.11 O
ATOM 13 C1' U B 109 59.071 -42.706 136.907 1.00 65.06 C
ATOM 14 N1 U B 109 58.440 -43.242 135.682 1.00 64.53 N
ATOM 15 C2 U B 109 57.217 -42.941 135.140 1.00 64.06 C
ATOM 16 O2 U B 109 56.507 -41.977 135.395 1.00 63.90 O
ATOM 17 N3 U B 109 56.841 -43.791 134.150 1.00 63.75 N
ATOM 18 C4 U B 109 57.474 -44.899 133.668 1.00 63.85 C
ATOM 19 O4 U B 109 56.993 -45.572 132.760 1.00 63.55 O
ATOM 20 C5 U B 109 58.672 -45.178 134.316 1.00 64.35 C
ATOM 21 C6 U B 109 59.046 -44.382 135.282 1.00 64.66 C
ATOM 22 P C B 110 59.446 -43.220 140.832 1.00 60.73 P
ATOM 23 OP1 C B 110 60.231 -42.856 142.053 1.00 61.36 O
ATOM 24 OP2 C B 110 59.371 -44.661 140.444 1.00 60.82 O
ATOM 25 O5' C B 110 57.984 -42.584 140.908 1.00 60.43 O
TER
ATOM 2 P C A 110 59.446 -43.220 140.832 1.00 60.73 P
ATOM 3 OP1 C A 110 60.231 -42.856 142.053 1.00 61.36 O
ATOM 4 OP2 C A 110 59.371 -44.661 140.444 1.00 60.82 O
ATOM 5 O5' C A 110 57.984 -42.584 140.908 1.00 60.43 O
ATOM 6 C5' C A 110 56.825 -43.389 140.952 1.00 60.45 C
ATOM 7 C4' C A 110 55.670 -42.691 140.291 1.00 59.85 C
ATOM 8 O4' C A 110 55.735 -42.899 138.868 1.00 59.24 O
ATOM 9 C3' C A 110 54.289 -43.180 140.675 1.00 59.96 C
ATOM 10 O3' C A 110 53.819 -42.618 141.877 1.00 60.36 O
ATOM 11 C2' C A 110 53.432 -42.821 139.470 1.00 59.22 C
ATOM 12 O2' C A 110 52.938 -41.489 139.579 1.00 58.96 O
ATOM 13 C1' C A 110 54.446 -42.893 138.320 1.00 58.82 C
ATOM 14 N1 C A 110 54.294 -44.092 137.498 1.00 58.67 N
ATOM 15 C2 C A 110 53.091 -44.318 136.837 1.00 58.28 C
ATOM 16 O2 C A 110 52.158 -43.504 136.995 1.00 58.08 O
ATOM 17 N3 C A 110 52.990 -45.418 136.038 1.00 58.14 N
ATOM 18 C4 C A 110 54.039 -46.253 135.897 1.00 58.37 C
ATOM 19 N4 C A 110 53.904 -47.346 135.130 1.00 58.26 N
ATOM 20 C5 C A 110 55.280 -46.013 136.561 1.00 58.77 C
ATOM 21 C6 C A 110 55.356 -44.930 137.340 1.00 58.90 C
ATOM 22 P A A 111 53.153 -43.563 142.977 1.00 61.52 P
ATOM 23 OP1 A A 111 52.758 -42.697 144.085 1.00 61.85 O
ATOM 24 OP2 A A 111 54.093 -44.687 143.226 1.00 61.98 O
ATOM 25 O5' A A 111 51.860 -44.101 142.266 1.00 61.14 O
TER
ATOM 1 O3' C B 108 64.504 -44.907 135.764 1.00 61.10 O
ATOM 2 P U B 109 63.457 -45.230 136.927 1.00 66.24 P
ATOM 3 OP1 U B 109 64.109 -44.884 138.214 1.00 66.87 O
ATOM 4 OP2 U B 109 62.995 -46.616 136.718 1.00 66.37 O
ATOM 5 O5' U B 109 62.277 -44.200 136.630 1.00 65.70 O
ATOM 6 C5' U B 109 62.448 -42.795 136.825 1.00 65.54 C
ATOM 7 C4' U B 109 61.277 -42.204 137.543 1.00 65.57 C
ATOM 8 O4' U B 109 60.196 -41.928 136.575 1.00 64.92 O
ATOM 9 C3' U B 109 60.700 -43.141 138.569 1.00 66.14 C
ATOM 10 O3' U B 109 60.094 -42.419 139.603 1.00 66.39 O
ATOM 11 C2' U B 109 59.635 -43.844 137.773 1.00 65.76 C
ATOM 12 O2' U B 109 58.650 -44.519 138.535 1.00 66.11 O
ATOM 13 C1' U B 109 59.071 -42.706 136.907 1.00 65.06 C
ATOM 14 N1 U B 109 58.440 -43.242 135.682 1.00 64.53 N
ATOM 15 C2 U B 109 57.217 -42.941 135.140 1.00 64.06 C
ATOM 16 O2 U B 109 56.507 -41.977 135.395 1.00 63.90 O
ATOM 17 N3 U B 109 56.841 -43.791 134.150 1.00 63.75 N
ATOM 18 C4 U B 109 57.474 -44.899 133.668 1.00 63.85 C
ATOM 19 O4 U B 109 56.993 -45.572 132.760 1.00 63.55 O
ATOM 20 C5 U B 109 58.672 -45.178 134.316 1.00 64.35 C
ATOM 21 C6 U B 109 59.046 -44.382 135.282 1.00 64.66 C
ATOM 22 P C B 110 59.446 -43.220 140.832 1.00 60.73 P
ATOM 23 OP1 C B 110 60.231 -42.856 142.053 1.00 61.36 O
ATOM 24 OP2 C B 110 59.371 -44.661 140.444 1.00 60.82 O
ATOM 25 O5' C B 110 57.984 -42.584 140.908 1.00 60.43 O
TER
Atoms:
C2: (53.091,-44.318,136.837)
OP1: (60.231,-42.856,142.053)
OP2: (59.371,-44.661,140.444)
C4: (54.039,-46.253,135.897)
O5': (57.984,-42.584,140.908)
C3': (54.289,-43.180,140.675)
C1': (54.446,-42.893,138.320)
O4': (55.735,-42.899,138.868)
C5': (56.825,-43.389,140.952)
P: (59.446,-43.220,140.832)
O2: (52.158,-43.504,136.995)
C4': (55.670,-42.691,140.291)
C2': (53.432,-42.821,139.470)
O2': (52.938,-41.489,139.579)
N1: (54.294,-44.092,137.498)
N3: (52.990,-45.418,136.038)
N4: (53.904,-47.346,135.130)
C6: (55.356,-44.930,137.340)
C5: (55.280,-46.013,136.561)
O3': (53.819,-42.618,141.877)
OP1: (60.231,-42.856,142.053)
OP2: (59.371,-44.661,140.444)
C4: (54.039,-46.253,135.897)
O5': (57.984,-42.584,140.908)
C3': (54.289,-43.180,140.675)
C1': (54.446,-42.893,138.320)
O4': (55.735,-42.899,138.868)
C5': (56.825,-43.389,140.952)
P: (59.446,-43.220,140.832)
O2: (52.158,-43.504,136.995)
C4': (55.670,-42.691,140.291)
C2': (53.432,-42.821,139.470)
O2': (52.938,-41.489,139.579)
N1: (54.294,-44.092,137.498)
N3: (52.990,-45.418,136.038)
N4: (53.904,-47.346,135.130)
C6: (55.356,-44.930,137.340)
C5: (55.280,-46.013,136.561)
O3': (53.819,-42.618,141.877)
C4: (57.474,-44.899,133.668)
N3: (56.841,-43.791,134.150)
OP1: (64.109,-44.884,138.214)
OP2: (62.995,-46.616,136.718)
C2: (57.217,-42.941,135.140)
C1': (59.071,-42.706,136.907)
C3': (60.700,-43.141,138.569)
O5': (62.277,-44.200,136.630)
O4': (60.196,-41.928,136.575)
C5': (62.448,-42.795,136.825)
P: (63.457,-45.230,136.927)
C4': (61.277,-42.204,137.543)
C2': (59.635,-43.844,137.773)
O2': (58.650,-44.519,138.535)
N1: (58.440,-43.242,135.682)
O4: (56.993,-45.572,132.760)
O2: (56.507,-41.977,135.395)
C6: (59.046,-44.382,135.282)
C5: (58.672,-45.178,134.316)
O3': (60.094,-42.419,139.603)
N3: (56.841,-43.791,134.150)
OP1: (64.109,-44.884,138.214)
OP2: (62.995,-46.616,136.718)
C2: (57.217,-42.941,135.140)
C1': (59.071,-42.706,136.907)
C3': (60.700,-43.141,138.569)
O5': (62.277,-44.200,136.630)
O4': (60.196,-41.928,136.575)
C5': (62.448,-42.795,136.825)
P: (63.457,-45.230,136.927)
C4': (61.277,-42.204,137.543)
C2': (59.635,-43.844,137.773)
O2': (58.650,-44.519,138.535)
N1: (58.440,-43.242,135.682)
O4: (56.993,-45.572,132.760)
O2: (56.507,-41.977,135.395)
C6: (59.046,-44.382,135.282)
C5: (58.672,-45.178,134.316)
O3': (60.094,-42.419,139.603)
Image (generated by PyMOL):