Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VQE:A1040:A1039
Extra
PDB:
ATOM 1 O3' U A1039 208.475 124.390 -3.272 1.00 44.39 O
ATOM 2 P C A1040 208.972 125.749 -3.962 1.00 43.17 P
ATOM 3 OP1 C A1040 210.185 125.420 -4.766 1.00 42.23 O
ATOM 4 OP2 C A1040 209.043 126.781 -2.899 1.00 44.94 O
ATOM 5 O5' C A1040 207.804 126.129 -4.973 1.00 41.94 O
ATOM 6 C5' C A1040 207.763 125.558 -6.298 1.00 39.71 C
ATOM 7 C4' C A1040 206.345 125.225 -6.697 1.00 35.55 C
ATOM 8 O4' C A1040 205.750 124.434 -5.626 1.00 35.56 O
ATOM 9 C3' C A1040 205.404 126.403 -6.913 1.00 33.61 C
ATOM 10 O3' C A1040 205.477 126.968 -8.246 1.00 25.08 O
ATOM 11 C2' C A1040 204.044 125.787 -6.597 1.00 35.33 C
ATOM 12 O2' C A1040 203.494 125.130 -7.717 1.00 35.93 O
ATOM 13 C1' C A1040 204.381 124.769 -5.487 1.00 38.08 C
ATOM 14 N1 C A1040 204.184 125.303 -4.118 1.00 44.15 N
ATOM 15 C2 C A1040 202.877 125.429 -3.585 1.00 47.80 C
ATOM 16 O2 C A1040 201.906 124.990 -4.228 1.00 51.09 O
ATOM 17 N3 C A1040 202.715 126.027 -2.373 1.00 48.81 N
ATOM 18 C4 C A1040 203.780 126.469 -1.695 1.00 48.47 C
ATOM 19 N4 C A1040 203.577 127.094 -0.533 1.00 48.10 N
ATOM 20 C5 C A1040 205.105 126.301 -2.182 1.00 49.15 C
ATOM 21 C6 C A1040 205.260 125.716 -3.381 1.00 47.88 C
TER
ATOM 1 O3' G B1038 211.427 125.600 1.940 1.00 47.06 O
ATOM 2 P U B1039 210.863 126.577 0.797 1.00 49.05 P
ATOM 3 OP1 U B1039 212.008 126.935 -0.093 1.00 51.03 O
ATOM 4 OP2 U B1039 210.080 127.670 1.439 1.00 48.98 O
ATOM 5 O5' U B1039 209.878 125.658 -0.036 1.00 48.83 O
ATOM 6 C5' U B1039 210.323 124.430 -0.631 1.00 48.08 C
ATOM 7 C4' U B1039 209.134 123.622 -1.079 1.00 47.87 C
ATOM 8 O4' U B1039 208.388 123.194 0.088 1.00 50.15 O
ATOM 9 C3' U B1039 208.133 124.398 -1.914 1.00 46.98 C
ATOM 10 O3' U B1039 208.475 124.390 -3.272 1.00 44.39 O
ATOM 11 C2' U B1039 206.824 123.676 -1.648 1.00 49.14 C
ATOM 12 O2' U B1039 206.634 122.551 -2.479 1.00 50.89 O
ATOM 13 C1' U B1039 206.997 123.241 -0.191 1.00 50.97 C
ATOM 14 N1 U B1039 206.342 124.153 0.765 1.00 53.15 N
ATOM 15 C2 U B1039 204.961 124.083 0.881 1.00 53.95 C
ATOM 16 O2 U B1039 204.282 123.307 0.240 1.00 55.80 O
ATOM 17 N3 U B1039 204.407 124.954 1.782 1.00 54.86 N
ATOM 18 C4 U B1039 205.071 125.862 2.574 1.00 54.97 C
ATOM 19 O4 U B1039 204.441 126.486 3.424 1.00 54.82 O
ATOM 20 C5 U B1039 206.490 125.881 2.399 1.00 54.75 C
ATOM 21 C6 U B1039 207.063 125.049 1.523 1.00 53.41 C
ATOM 22 P C B1040 208.972 125.749 -3.962 1.00 43.17 P
ATOM 23 OP1 C B1040 210.185 125.420 -4.766 1.00 42.23 O
ATOM 24 OP2 C B1040 209.043 126.781 -2.899 1.00 44.94 O
ATOM 25 O5' C B1040 207.804 126.129 -4.973 1.00 41.94 O
TER
ATOM 2 P C A1040 208.972 125.749 -3.962 1.00 43.17 P
ATOM 3 OP1 C A1040 210.185 125.420 -4.766 1.00 42.23 O
ATOM 4 OP2 C A1040 209.043 126.781 -2.899 1.00 44.94 O
ATOM 5 O5' C A1040 207.804 126.129 -4.973 1.00 41.94 O
ATOM 6 C5' C A1040 207.763 125.558 -6.298 1.00 39.71 C
ATOM 7 C4' C A1040 206.345 125.225 -6.697 1.00 35.55 C
ATOM 8 O4' C A1040 205.750 124.434 -5.626 1.00 35.56 O
ATOM 9 C3' C A1040 205.404 126.403 -6.913 1.00 33.61 C
ATOM 10 O3' C A1040 205.477 126.968 -8.246 1.00 25.08 O
ATOM 11 C2' C A1040 204.044 125.787 -6.597 1.00 35.33 C
ATOM 12 O2' C A1040 203.494 125.130 -7.717 1.00 35.93 O
ATOM 13 C1' C A1040 204.381 124.769 -5.487 1.00 38.08 C
ATOM 14 N1 C A1040 204.184 125.303 -4.118 1.00 44.15 N
ATOM 15 C2 C A1040 202.877 125.429 -3.585 1.00 47.80 C
ATOM 16 O2 C A1040 201.906 124.990 -4.228 1.00 51.09 O
ATOM 17 N3 C A1040 202.715 126.027 -2.373 1.00 48.81 N
ATOM 18 C4 C A1040 203.780 126.469 -1.695 1.00 48.47 C
ATOM 19 N4 C A1040 203.577 127.094 -0.533 1.00 48.10 N
ATOM 20 C5 C A1040 205.105 126.301 -2.182 1.00 49.15 C
ATOM 21 C6 C A1040 205.260 125.716 -3.381 1.00 47.88 C
TER
ATOM 1 O3' G B1038 211.427 125.600 1.940 1.00 47.06 O
ATOM 2 P U B1039 210.863 126.577 0.797 1.00 49.05 P
ATOM 3 OP1 U B1039 212.008 126.935 -0.093 1.00 51.03 O
ATOM 4 OP2 U B1039 210.080 127.670 1.439 1.00 48.98 O
ATOM 5 O5' U B1039 209.878 125.658 -0.036 1.00 48.83 O
ATOM 6 C5' U B1039 210.323 124.430 -0.631 1.00 48.08 C
ATOM 7 C4' U B1039 209.134 123.622 -1.079 1.00 47.87 C
ATOM 8 O4' U B1039 208.388 123.194 0.088 1.00 50.15 O
ATOM 9 C3' U B1039 208.133 124.398 -1.914 1.00 46.98 C
ATOM 10 O3' U B1039 208.475 124.390 -3.272 1.00 44.39 O
ATOM 11 C2' U B1039 206.824 123.676 -1.648 1.00 49.14 C
ATOM 12 O2' U B1039 206.634 122.551 -2.479 1.00 50.89 O
ATOM 13 C1' U B1039 206.997 123.241 -0.191 1.00 50.97 C
ATOM 14 N1 U B1039 206.342 124.153 0.765 1.00 53.15 N
ATOM 15 C2 U B1039 204.961 124.083 0.881 1.00 53.95 C
ATOM 16 O2 U B1039 204.282 123.307 0.240 1.00 55.80 O
ATOM 17 N3 U B1039 204.407 124.954 1.782 1.00 54.86 N
ATOM 18 C4 U B1039 205.071 125.862 2.574 1.00 54.97 C
ATOM 19 O4 U B1039 204.441 126.486 3.424 1.00 54.82 O
ATOM 20 C5 U B1039 206.490 125.881 2.399 1.00 54.75 C
ATOM 21 C6 U B1039 207.063 125.049 1.523 1.00 53.41 C
ATOM 22 P C B1040 208.972 125.749 -3.962 1.00 43.17 P
ATOM 23 OP1 C B1040 210.185 125.420 -4.766 1.00 42.23 O
ATOM 24 OP2 C B1040 209.043 126.781 -2.899 1.00 44.94 O
ATOM 25 O5' C B1040 207.804 126.129 -4.973 1.00 41.94 O
TER
Atoms:
C2: (202.877,125.429,-3.585)
OP1: (210.185,125.420,-4.766)
OP2: (209.043,126.781,-2.899)
C4: (203.780,126.469,-1.695)
O5': (207.804,126.129,-4.973)
C3': (205.404,126.403,-6.913)
C1': (204.381,124.769,-5.487)
O4': (205.750,124.434,-5.626)
C5': (207.763,125.558,-6.298)
P: (208.972,125.749,-3.962)
O2: (201.906,124.990,-4.228)
C4': (206.345,125.225,-6.697)
C2': (204.044,125.787,-6.597)
O2': (203.494,125.130,-7.717)
N1: (204.184,125.303,-4.118)
N3: (202.715,126.027,-2.373)
N4: (203.577,127.094,-0.533)
C6: (205.260,125.716,-3.381)
C5: (205.105,126.301,-2.182)
O3': (205.477,126.968,-8.246)
OP1: (210.185,125.420,-4.766)
OP2: (209.043,126.781,-2.899)
C4: (203.780,126.469,-1.695)
O5': (207.804,126.129,-4.973)
C3': (205.404,126.403,-6.913)
C1': (204.381,124.769,-5.487)
O4': (205.750,124.434,-5.626)
C5': (207.763,125.558,-6.298)
P: (208.972,125.749,-3.962)
O2: (201.906,124.990,-4.228)
C4': (206.345,125.225,-6.697)
C2': (204.044,125.787,-6.597)
O2': (203.494,125.130,-7.717)
N1: (204.184,125.303,-4.118)
N3: (202.715,126.027,-2.373)
N4: (203.577,127.094,-0.533)
C6: (205.260,125.716,-3.381)
C5: (205.105,126.301,-2.182)
O3': (205.477,126.968,-8.246)
C4: (205.071,125.862,2.574)
N3: (204.407,124.954,1.782)
OP1: (212.008,126.935,-0.093)
OP2: (210.080,127.670,1.439)
C2: (204.961,124.083,0.881)
C1': (206.997,123.241,-0.191)
C3': (208.133,124.398,-1.914)
O5': (209.878,125.658,-0.036)
O4': (208.388,123.194,0.088)
C5': (210.323,124.430,-0.631)
P: (210.863,126.577,0.797)
C4': (209.134,123.622,-1.079)
C2': (206.824,123.676,-1.648)
O2': (206.634,122.551,-2.479)
N1: (206.342,124.153,0.765)
O4: (204.441,126.486,3.424)
O2: (204.282,123.307,0.240)
C6: (207.063,125.049,1.523)
C5: (206.490,125.881,2.399)
O3': (208.475,124.390,-3.272)
N3: (204.407,124.954,1.782)
OP1: (212.008,126.935,-0.093)
OP2: (210.080,127.670,1.439)
C2: (204.961,124.083,0.881)
C1': (206.997,123.241,-0.191)
C3': (208.133,124.398,-1.914)
O5': (209.878,125.658,-0.036)
O4': (208.388,123.194,0.088)
C5': (210.323,124.430,-0.631)
P: (210.863,126.577,0.797)
C4': (209.134,123.622,-1.079)
C2': (206.824,123.676,-1.648)
O2': (206.634,122.551,-2.479)
N1: (206.342,124.153,0.765)
O4: (204.441,126.486,3.424)
O2: (204.282,123.307,0.240)
C6: (207.063,125.049,1.523)
C5: (206.490,125.881,2.399)
O3': (208.475,124.390,-3.272)
Image (generated by PyMOL):