Doublet info:
Details
Nucleotide types:
CU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:0969:0968
Extra
PDB:
ATOM 1 O3' U A 968 61.681 57.490 110.134 1.00 50.00 O
ATOM 2 P C A 969 61.652 56.032 109.460 1.00 52.78 P
ATOM 3 OP1 C A 969 63.057 55.560 109.371 1.00 51.62 O
ATOM 4 OP2 C A 969 60.815 56.064 108.234 1.00 51.24 O
ATOM 5 O5' C A 969 60.860 55.183 110.552 1.00 52.14 O
ATOM 6 C5' C A 969 61.131 53.790 110.769 1.00 52.73 C
ATOM 7 C4' C A 969 60.182 53.228 111.806 1.00 54.15 C
ATOM 8 O4' C A 969 60.441 53.808 113.118 1.00 53.35 O
ATOM 9 C3' C A 969 58.714 53.540 111.581 1.00 54.18 C
ATOM 10 O3' C A 969 58.110 52.742 110.581 1.00 55.27 O
ATOM 11 C2' C A 969 58.128 53.308 112.964 1.00 52.16 C
ATOM 12 O2' C A 969 57.984 51.943 113.278 1.00 50.58 O
ATOM 13 C1' C A 969 59.217 53.922 113.839 1.00 52.70 C
ATOM 14 N1 C A 969 58.924 55.348 114.066 1.00 54.51 N
ATOM 15 C2 C A 969 58.077 55.701 115.123 1.00 55.44 C
ATOM 16 O2 C A 969 57.628 54.807 115.862 1.00 57.04 O
ATOM 17 N3 C A 969 57.765 57.005 115.312 1.00 55.10 N
ATOM 18 C4 C A 969 58.266 57.936 114.502 1.00 53.64 C
ATOM 19 N4 C A 969 57.922 59.203 114.721 1.00 52.51 N
ATOM 20 C5 C A 969 59.141 57.609 113.430 1.00 54.44 C
ATOM 21 C6 C A 969 59.444 56.317 113.251 1.00 55.20 C
ATOM 22 P C A 970 56.825 53.305 109.806 1.00 55.36 P
ATOM 23 OP1 C A 970 55.940 52.143 109.539 1.00 56.59 O
ATOM 24 OP2 C A 970 57.295 54.155 108.673 1.00 54.40 O
ATOM 25 O5' C A 970 56.106 54.209 110.903 1.00 51.33 O
TER
ATOM 1 O3' C B 967 65.676 62.594 108.060 1.00 43.61 O
ATOM 2 P U B 968 64.462 61.841 107.303 1.00 44.44 P
ATOM 3 OP1 U B 968 65.036 60.878 106.331 1.00 42.85 O
ATOM 4 OP2 U B 968 63.510 62.874 106.835 1.00 44.79 O
ATOM 5 O5' U B 968 63.707 61.012 108.431 1.00 44.76 O
ATOM 6 C5' U B 968 64.316 59.863 109.041 1.00 47.10 C
ATOM 7 C4' U B 968 63.345 59.194 109.991 1.00 47.63 C
ATOM 8 O4' U B 968 62.910 60.163 110.985 1.00 47.38 O
ATOM 9 C3' U B 968 62.072 58.622 109.375 1.00 47.41 C
ATOM 10 O3' U B 968 61.681 57.490 110.134 1.00 50.00 O
ATOM 11 C2' U B 968 61.064 59.745 109.598 1.00 46.45 C
ATOM 12 O2' U B 968 59.728 59.296 109.684 1.00 44.75 O
ATOM 13 C1' U B 968 61.505 60.280 110.954 1.00 46.15 C
ATOM 14 N1 U B 968 61.145 61.688 111.166 1.00 47.07 N
ATOM 15 C2 U B 968 60.075 61.958 111.996 1.00 48.13 C
ATOM 16 O2 U B 968 59.423 61.087 112.544 1.00 48.40 O
ATOM 17 N3 U B 968 59.791 63.291 112.159 1.00 49.13 N
ATOM 18 C4 U B 968 60.450 64.357 111.586 1.00 48.86 C
ATOM 19 O4 U B 968 60.058 65.502 111.813 1.00 48.94 O
ATOM 20 C5 U B 968 61.544 63.996 110.740 1.00 48.54 C
ATOM 21 C6 U B 968 61.846 62.707 110.563 1.00 47.32 C
ATOM 22 P C B 969 61.652 56.032 109.460 1.00 52.78 P
ATOM 23 OP1 C B 969 63.057 55.560 109.371 1.00 51.62 O
ATOM 24 OP2 C B 969 60.815 56.064 108.234 1.00 51.24 O
ATOM 25 O5' C B 969 60.860 55.183 110.552 1.00 52.14 O
TER
ATOM 2 P C A 969 61.652 56.032 109.460 1.00 52.78 P
ATOM 3 OP1 C A 969 63.057 55.560 109.371 1.00 51.62 O
ATOM 4 OP2 C A 969 60.815 56.064 108.234 1.00 51.24 O
ATOM 5 O5' C A 969 60.860 55.183 110.552 1.00 52.14 O
ATOM 6 C5' C A 969 61.131 53.790 110.769 1.00 52.73 C
ATOM 7 C4' C A 969 60.182 53.228 111.806 1.00 54.15 C
ATOM 8 O4' C A 969 60.441 53.808 113.118 1.00 53.35 O
ATOM 9 C3' C A 969 58.714 53.540 111.581 1.00 54.18 C
ATOM 10 O3' C A 969 58.110 52.742 110.581 1.00 55.27 O
ATOM 11 C2' C A 969 58.128 53.308 112.964 1.00 52.16 C
ATOM 12 O2' C A 969 57.984 51.943 113.278 1.00 50.58 O
ATOM 13 C1' C A 969 59.217 53.922 113.839 1.00 52.70 C
ATOM 14 N1 C A 969 58.924 55.348 114.066 1.00 54.51 N
ATOM 15 C2 C A 969 58.077 55.701 115.123 1.00 55.44 C
ATOM 16 O2 C A 969 57.628 54.807 115.862 1.00 57.04 O
ATOM 17 N3 C A 969 57.765 57.005 115.312 1.00 55.10 N
ATOM 18 C4 C A 969 58.266 57.936 114.502 1.00 53.64 C
ATOM 19 N4 C A 969 57.922 59.203 114.721 1.00 52.51 N
ATOM 20 C5 C A 969 59.141 57.609 113.430 1.00 54.44 C
ATOM 21 C6 C A 969 59.444 56.317 113.251 1.00 55.20 C
ATOM 22 P C A 970 56.825 53.305 109.806 1.00 55.36 P
ATOM 23 OP1 C A 970 55.940 52.143 109.539 1.00 56.59 O
ATOM 24 OP2 C A 970 57.295 54.155 108.673 1.00 54.40 O
ATOM 25 O5' C A 970 56.106 54.209 110.903 1.00 51.33 O
TER
ATOM 1 O3' C B 967 65.676 62.594 108.060 1.00 43.61 O
ATOM 2 P U B 968 64.462 61.841 107.303 1.00 44.44 P
ATOM 3 OP1 U B 968 65.036 60.878 106.331 1.00 42.85 O
ATOM 4 OP2 U B 968 63.510 62.874 106.835 1.00 44.79 O
ATOM 5 O5' U B 968 63.707 61.012 108.431 1.00 44.76 O
ATOM 6 C5' U B 968 64.316 59.863 109.041 1.00 47.10 C
ATOM 7 C4' U B 968 63.345 59.194 109.991 1.00 47.63 C
ATOM 8 O4' U B 968 62.910 60.163 110.985 1.00 47.38 O
ATOM 9 C3' U B 968 62.072 58.622 109.375 1.00 47.41 C
ATOM 10 O3' U B 968 61.681 57.490 110.134 1.00 50.00 O
ATOM 11 C2' U B 968 61.064 59.745 109.598 1.00 46.45 C
ATOM 12 O2' U B 968 59.728 59.296 109.684 1.00 44.75 O
ATOM 13 C1' U B 968 61.505 60.280 110.954 1.00 46.15 C
ATOM 14 N1 U B 968 61.145 61.688 111.166 1.00 47.07 N
ATOM 15 C2 U B 968 60.075 61.958 111.996 1.00 48.13 C
ATOM 16 O2 U B 968 59.423 61.087 112.544 1.00 48.40 O
ATOM 17 N3 U B 968 59.791 63.291 112.159 1.00 49.13 N
ATOM 18 C4 U B 968 60.450 64.357 111.586 1.00 48.86 C
ATOM 19 O4 U B 968 60.058 65.502 111.813 1.00 48.94 O
ATOM 20 C5 U B 968 61.544 63.996 110.740 1.00 48.54 C
ATOM 21 C6 U B 968 61.846 62.707 110.563 1.00 47.32 C
ATOM 22 P C B 969 61.652 56.032 109.460 1.00 52.78 P
ATOM 23 OP1 C B 969 63.057 55.560 109.371 1.00 51.62 O
ATOM 24 OP2 C B 969 60.815 56.064 108.234 1.00 51.24 O
ATOM 25 O5' C B 969 60.860 55.183 110.552 1.00 52.14 O
TER
Atoms:
C2: (58.077,55.701,115.123)
OP1: (63.057,55.560,109.371)
OP2: (60.815,56.064,108.234)
C4: (58.266,57.936,114.502)
O5': (60.860,55.183,110.552)
C3': (58.714,53.540,111.581)
C1': (59.217,53.922,113.839)
O4': (60.441,53.808,113.118)
C5': (61.131,53.790,110.769)
P: (61.652,56.032,109.460)
O2: (57.628,54.807,115.862)
C4': (60.182,53.228,111.806)
C2': (58.128,53.308,112.964)
O2': (57.984,51.943,113.278)
N1: (58.924,55.348,114.066)
N3: (57.765,57.005,115.312)
N4: (57.922,59.203,114.721)
C6: (59.444,56.317,113.251)
C5: (59.141,57.609,113.430)
O3': (58.110,52.742,110.581)
OP1: (63.057,55.560,109.371)
OP2: (60.815,56.064,108.234)
C4: (58.266,57.936,114.502)
O5': (60.860,55.183,110.552)
C3': (58.714,53.540,111.581)
C1': (59.217,53.922,113.839)
O4': (60.441,53.808,113.118)
C5': (61.131,53.790,110.769)
P: (61.652,56.032,109.460)
O2: (57.628,54.807,115.862)
C4': (60.182,53.228,111.806)
C2': (58.128,53.308,112.964)
O2': (57.984,51.943,113.278)
N1: (58.924,55.348,114.066)
N3: (57.765,57.005,115.312)
N4: (57.922,59.203,114.721)
C6: (59.444,56.317,113.251)
C5: (59.141,57.609,113.430)
O3': (58.110,52.742,110.581)
C4: (60.450,64.357,111.586)
N3: (59.791,63.291,112.159)
OP1: (65.036,60.878,106.331)
OP2: (63.510,62.874,106.835)
C2: (60.075,61.958,111.996)
C1': (61.505,60.280,110.954)
C3': (62.072,58.622,109.375)
O5': (63.707,61.012,108.431)
O4': (62.910,60.163,110.985)
C5': (64.316,59.863,109.041)
P: (64.462,61.841,107.303)
C4': (63.345,59.194,109.991)
C2': (61.064,59.745,109.598)
O2': (59.728,59.296,109.684)
N1: (61.145,61.688,111.166)
O4: (60.058,65.502,111.813)
O2: (59.423,61.087,112.544)
C6: (61.846,62.707,110.563)
C5: (61.544,63.996,110.740)
O3': (61.681,57.490,110.134)
N3: (59.791,63.291,112.159)
OP1: (65.036,60.878,106.331)
OP2: (63.510,62.874,106.835)
C2: (60.075,61.958,111.996)
C1': (61.505,60.280,110.954)
C3': (62.072,58.622,109.375)
O5': (63.707,61.012,108.431)
O4': (62.910,60.163,110.985)
C5': (64.316,59.863,109.041)
P: (64.462,61.841,107.303)
C4': (63.345,59.194,109.991)
C2': (61.064,59.745,109.598)
O2': (59.728,59.296,109.684)
N1: (61.145,61.688,111.166)
O4: (60.058,65.502,111.813)
O2: (59.423,61.087,112.544)
C6: (61.846,62.707,110.563)
C5: (61.544,63.996,110.740)
O3': (61.681,57.490,110.134)
Image (generated by PyMOL):