Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3PDR:A46:A64
Extra
PDB:
ATOM 1 O3' A A 45 7.667 53.988 19.292 1.00 25.75 O
ATOM 2 P A A 46 6.080 54.078 19.107 1.00 26.29 P
ATOM 3 OP1 A A 46 5.582 52.702 19.320 1.00 28.02 O
ATOM 4 OP2 A A 46 5.820 54.772 17.841 1.00 26.61 O
ATOM 5 O5' A A 46 5.577 54.982 20.313 1.00 25.13 O
ATOM 6 C5' A A 46 5.834 54.665 21.676 1.00 25.08 C
ATOM 7 C4' A A 46 5.504 55.853 22.552 1.00 25.54 C
ATOM 8 O4' A A 46 6.353 56.974 22.195 1.00 26.30 O
ATOM 9 C3' A A 46 4.099 56.404 22.367 1.00 23.27 C
ATOM 10 O3' A A 46 3.152 55.675 23.111 1.00 30.33 O
ATOM 11 C2' A A 46 4.241 57.850 22.818 1.00 26.07 C
ATOM 12 O2' A A 46 4.320 57.914 24.236 1.00 27.77 O
ATOM 13 C1' A A 46 5.614 58.182 22.235 1.00 25.93 C
ATOM 14 N9 A A 46 5.473 58.694 20.858 1.00 26.51 N
ATOM 15 C8 A A 46 5.611 57.997 19.683 1.00 26.23 C
ATOM 16 N7 A A 46 5.395 58.729 18.608 1.00 24.72 N
ATOM 17 C5 A A 46 5.104 59.988 19.103 1.00 26.62 C
ATOM 18 C6 A A 46 4.796 61.207 18.465 1.00 27.31 C
ATOM 19 N6 A A 46 4.726 61.354 17.133 1.00 27.72 N
ATOM 20 N1 A A 46 4.554 62.271 19.252 1.00 26.54 N
ATOM 21 C2 A A 46 4.624 62.123 20.579 1.00 26.89 C
ATOM 22 N3 A A 46 4.910 61.037 21.289 1.00 28.31 N
ATOM 23 C4 A A 46 5.146 59.984 20.487 1.00 26.59 C
ATOM 24 P A A 47 1.796 55.182 22.427 1.00 28.67 P
ATOM 25 OP1 A A 47 1.234 54.264 23.435 1.00 30.79 O
ATOM 26 OP2 A A 47 2.027 54.682 21.048 1.00 28.19 O
ATOM 27 O5' A A 47 0.985 56.542 22.344 1.00 28.52 O
TER
ATOM 1 O3' C B 63 0.887 63.532 16.524 1.00 29.06 O
ATOM 2 P A B 64 2.159 64.434 16.103 1.00 37.30 P
ATOM 3 OP1 A B 64 1.709 65.115 14.877 1.00 35.95 O
ATOM 4 OP2 A B 64 3.379 63.600 16.035 1.00 30.77 O
ATOM 5 O5' A B 64 2.305 65.443 17.331 1.00 30.41 O
ATOM 6 C5' A B 64 1.480 66.594 17.400 1.00 35.46 C
ATOM 7 C4' A B 64 0.922 66.821 18.782 1.00 32.16 C
ATOM 8 O4' A B 64 0.034 65.733 19.154 1.00 32.33 O
ATOM 9 C3' A B 64 1.920 66.888 19.929 1.00 28.86 C
ATOM 10 O3' A B 64 2.612 68.124 19.998 1.00 30.69 O
ATOM 11 C2' A B 64 1.017 66.623 21.124 1.00 32.82 C
ATOM 12 O2' A B 64 0.230 67.765 21.432 1.00 33.54 O
ATOM 13 C1' A B 64 0.072 65.565 20.556 1.00 30.19 C
ATOM 14 N9 A B 64 0.516 64.200 20.905 1.00 33.72 N
ATOM 15 C8 A B 64 1.179 63.255 20.153 1.00 29.51 C
ATOM 16 N7 A B 64 1.413 62.135 20.809 1.00 27.92 N
ATOM 17 C5 A B 64 0.871 62.361 22.069 1.00 29.99 C
ATOM 18 C6 A B 64 0.793 61.575 23.237 1.00 30.99 C
ATOM 19 N6 A B 64 1.267 60.329 23.341 1.00 27.77 N
ATOM 20 N1 A B 64 0.178 62.117 24.317 1.00 32.63 N
ATOM 21 C2 A B 64 -0.310 63.360 24.225 1.00 33.61 C
ATOM 22 N3 A B 64 -0.284 64.200 23.192 1.00 31.66 N
ATOM 23 C4 A B 64 0.319 63.626 22.134 1.00 32.31 C
ATOM 24 P A B 65 4.087 68.221 20.636 1.00 35.95 P
ATOM 25 OP1 A B 65 4.609 69.581 20.346 1.00 34.69 O
ATOM 26 OP2 A B 65 4.820 67.040 20.123 1.00 37.80 O
ATOM 27 O5' A B 65 3.848 68.034 22.193 1.00 31.20 O
TER
ATOM 2 P A A 46 6.080 54.078 19.107 1.00 26.29 P
ATOM 3 OP1 A A 46 5.582 52.702 19.320 1.00 28.02 O
ATOM 4 OP2 A A 46 5.820 54.772 17.841 1.00 26.61 O
ATOM 5 O5' A A 46 5.577 54.982 20.313 1.00 25.13 O
ATOM 6 C5' A A 46 5.834 54.665 21.676 1.00 25.08 C
ATOM 7 C4' A A 46 5.504 55.853 22.552 1.00 25.54 C
ATOM 8 O4' A A 46 6.353 56.974 22.195 1.00 26.30 O
ATOM 9 C3' A A 46 4.099 56.404 22.367 1.00 23.27 C
ATOM 10 O3' A A 46 3.152 55.675 23.111 1.00 30.33 O
ATOM 11 C2' A A 46 4.241 57.850 22.818 1.00 26.07 C
ATOM 12 O2' A A 46 4.320 57.914 24.236 1.00 27.77 O
ATOM 13 C1' A A 46 5.614 58.182 22.235 1.00 25.93 C
ATOM 14 N9 A A 46 5.473 58.694 20.858 1.00 26.51 N
ATOM 15 C8 A A 46 5.611 57.997 19.683 1.00 26.23 C
ATOM 16 N7 A A 46 5.395 58.729 18.608 1.00 24.72 N
ATOM 17 C5 A A 46 5.104 59.988 19.103 1.00 26.62 C
ATOM 18 C6 A A 46 4.796 61.207 18.465 1.00 27.31 C
ATOM 19 N6 A A 46 4.726 61.354 17.133 1.00 27.72 N
ATOM 20 N1 A A 46 4.554 62.271 19.252 1.00 26.54 N
ATOM 21 C2 A A 46 4.624 62.123 20.579 1.00 26.89 C
ATOM 22 N3 A A 46 4.910 61.037 21.289 1.00 28.31 N
ATOM 23 C4 A A 46 5.146 59.984 20.487 1.00 26.59 C
ATOM 24 P A A 47 1.796 55.182 22.427 1.00 28.67 P
ATOM 25 OP1 A A 47 1.234 54.264 23.435 1.00 30.79 O
ATOM 26 OP2 A A 47 2.027 54.682 21.048 1.00 28.19 O
ATOM 27 O5' A A 47 0.985 56.542 22.344 1.00 28.52 O
TER
ATOM 1 O3' C B 63 0.887 63.532 16.524 1.00 29.06 O
ATOM 2 P A B 64 2.159 64.434 16.103 1.00 37.30 P
ATOM 3 OP1 A B 64 1.709 65.115 14.877 1.00 35.95 O
ATOM 4 OP2 A B 64 3.379 63.600 16.035 1.00 30.77 O
ATOM 5 O5' A B 64 2.305 65.443 17.331 1.00 30.41 O
ATOM 6 C5' A B 64 1.480 66.594 17.400 1.00 35.46 C
ATOM 7 C4' A B 64 0.922 66.821 18.782 1.00 32.16 C
ATOM 8 O4' A B 64 0.034 65.733 19.154 1.00 32.33 O
ATOM 9 C3' A B 64 1.920 66.888 19.929 1.00 28.86 C
ATOM 10 O3' A B 64 2.612 68.124 19.998 1.00 30.69 O
ATOM 11 C2' A B 64 1.017 66.623 21.124 1.00 32.82 C
ATOM 12 O2' A B 64 0.230 67.765 21.432 1.00 33.54 O
ATOM 13 C1' A B 64 0.072 65.565 20.556 1.00 30.19 C
ATOM 14 N9 A B 64 0.516 64.200 20.905 1.00 33.72 N
ATOM 15 C8 A B 64 1.179 63.255 20.153 1.00 29.51 C
ATOM 16 N7 A B 64 1.413 62.135 20.809 1.00 27.92 N
ATOM 17 C5 A B 64 0.871 62.361 22.069 1.00 29.99 C
ATOM 18 C6 A B 64 0.793 61.575 23.237 1.00 30.99 C
ATOM 19 N6 A B 64 1.267 60.329 23.341 1.00 27.77 N
ATOM 20 N1 A B 64 0.178 62.117 24.317 1.00 32.63 N
ATOM 21 C2 A B 64 -0.310 63.360 24.225 1.00 33.61 C
ATOM 22 N3 A B 64 -0.284 64.200 23.192 1.00 31.66 N
ATOM 23 C4 A B 64 0.319 63.626 22.134 1.00 32.31 C
ATOM 24 P A B 65 4.087 68.221 20.636 1.00 35.95 P
ATOM 25 OP1 A B 65 4.609 69.581 20.346 1.00 34.69 O
ATOM 26 OP2 A B 65 4.820 67.040 20.123 1.00 37.80 O
ATOM 27 O5' A B 65 3.848 68.034 22.193 1.00 31.20 O
TER
Atoms:
OP1: (5.582,52.702,19.320)
OP2: (5.820,54.772,17.841)
C3': (4.099,56.404,22.367)
C1': (5.614,58.182,22.235)
C5': (5.834,54.665,21.676)
O4': (6.353,56.974,22.195)
C8: (5.611,57.997,19.683)
O2': (4.320,57.914,24.236)
C6: (4.796,61.207,18.465)
C5: (5.104,59.988,19.103)
C4: (5.146,59.984,20.487)
P: (6.080,54.078,19.107)
C4': (5.504,55.853,22.552)
C2': (4.241,57.850,22.818)
C2: (4.624,62.123,20.579)
N1: (4.554,62.271,19.252)
N3: (4.910,61.037,21.289)
N6: (4.726,61.354,17.133)
N7: (5.395,58.729,18.608)
N9: (5.473,58.694,20.858)
O5': (5.577,54.982,20.313)
O3': (3.152,55.675,23.111)
OP2: (5.820,54.772,17.841)
C3': (4.099,56.404,22.367)
C1': (5.614,58.182,22.235)
C5': (5.834,54.665,21.676)
O4': (6.353,56.974,22.195)
C8: (5.611,57.997,19.683)
O2': (4.320,57.914,24.236)
C6: (4.796,61.207,18.465)
C5: (5.104,59.988,19.103)
C4: (5.146,59.984,20.487)
P: (6.080,54.078,19.107)
C4': (5.504,55.853,22.552)
C2': (4.241,57.850,22.818)
C2: (4.624,62.123,20.579)
N1: (4.554,62.271,19.252)
N3: (4.910,61.037,21.289)
N6: (4.726,61.354,17.133)
N7: (5.395,58.729,18.608)
N9: (5.473,58.694,20.858)
O5': (5.577,54.982,20.313)
O3': (3.152,55.675,23.111)
OP1: (1.709,65.115,14.877)
OP2: (3.379,63.600,16.035)
C3': (1.920,66.888,19.929)
C1': (0.072,65.565,20.556)
C5': (1.480,66.594,17.400)
O4': (0.034,65.733,19.154)
C8: (1.179,63.255,20.153)
O2': (0.230,67.765,21.432)
C6: (0.793,61.575,23.237)
C5: (0.871,62.361,22.069)
C4: (0.319,63.626,22.134)
P: (2.159,64.434,16.103)
C4': (0.922,66.821,18.782)
C2': (1.017,66.623,21.124)
C2: (-0.310,63.360,24.225)
N1: (0.178,62.117,24.317)
N3: (-0.284,64.200,23.192)
N6: (1.267,60.329,23.341)
N7: (1.413,62.135,20.809)
N9: (0.516,64.200,20.905)
O5': (2.305,65.443,17.331)
O3': (2.612,68.124,19.998)
OP2: (3.379,63.600,16.035)
C3': (1.920,66.888,19.929)
C1': (0.072,65.565,20.556)
C5': (1.480,66.594,17.400)
O4': (0.034,65.733,19.154)
C8: (1.179,63.255,20.153)
O2': (0.230,67.765,21.432)
C6: (0.793,61.575,23.237)
C5: (0.871,62.361,22.069)
C4: (0.319,63.626,22.134)
P: (2.159,64.434,16.103)
C4': (0.922,66.821,18.782)
C2': (1.017,66.623,21.124)
C2: (-0.310,63.360,24.225)
N1: (0.178,62.117,24.317)
N3: (-0.284,64.200,23.192)
N6: (1.267,60.329,23.341)
N7: (1.413,62.135,20.809)
N9: (0.516,64.200,20.905)
O5': (2.305,65.443,17.331)
O3': (2.612,68.124,19.998)
Image (generated by PyMOL):