Doublet info:
Details
Nucleotide types:
CG
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:343:340
Extra
PDB:
ATOM 1 O3' U A 42 8.845 -85.457 31.770 1.00 62.22 O
ATOM 2 P C A 43 9.806 -86.722 31.703 1.00 62.00 P
ATOM 3 OP1 C A 43 11.151 -86.263 31.312 1.00 61.65 O
ATOM 4 OP2 C A 43 9.124 -87.714 30.846 1.00 63.14 O
ATOM 5 O5' C A 43 9.802 -87.238 33.206 1.00 61.44 O
ATOM 6 C5' C A 43 10.583 -86.619 34.203 1.00 60.39 C
ATOM 7 C4' C A 43 10.206 -87.092 35.588 1.00 59.98 C
ATOM 8 O4' C A 43 8.790 -86.885 35.837 1.00 60.14 O
ATOM 9 C3' C A 43 10.345 -88.563 35.856 1.00 60.52 C
ATOM 10 O3' C A 43 11.661 -88.995 35.940 1.00 60.34 O
ATOM 11 C2' C A 43 9.563 -88.700 37.136 1.00 60.13 C
ATOM 12 O2' C A 43 10.239 -88.049 38.206 1.00 59.07 O
ATOM 13 C1' C A 43 8.346 -87.866 36.766 1.00 60.25 C
ATOM 14 N1 C A 43 7.323 -88.697 36.126 1.00 61.27 N
ATOM 15 C2 C A 43 6.560 -89.533 36.954 1.00 61.47 C
ATOM 16 O2 C A 43 6.748 -89.515 38.181 1.00 60.78 O
ATOM 17 N3 C A 43 5.635 -90.358 36.416 1.00 62.43 N
ATOM 18 C4 C A 43 5.457 -90.340 35.101 1.00 63.16 C
ATOM 19 N4 C A 43 4.506 -91.139 34.593 1.00 64.11 N
ATOM 20 C5 C A 43 6.225 -89.495 34.232 1.00 62.98 C
ATOM 21 C6 C A 43 7.142 -88.691 34.784 1.00 62.03 C
ATOM 22 P A A 44 12.121 -90.175 34.981 1.00 75.70 P
ATOM 23 OP1 A A 44 13.583 -90.009 34.749 1.00 75.37 O
ATOM 24 OP2 A A 44 11.225 -90.141 33.850 1.00 76.53 O
ATOM 25 O5' A A 44 11.836 -91.457 35.867 1.00 75.95 O
TER
ATOM 1 O3' C B 39 -3.699 -90.219 35.602 1.00 74.68 O
ATOM 2 P G B 40 -2.891 -91.456 36.257 1.00 79.91 P
ATOM 3 OP1 G B 40 -3.808 -92.638 36.238 1.00 80.83 O
ATOM 4 OP2 G B 40 -2.347 -90.993 37.563 1.00 78.84 O
ATOM 5 O5' G B 40 -1.701 -91.687 35.235 1.00 80.17 O
ATOM 6 C5' G B 40 -0.976 -90.591 34.727 1.00 79.64 C
ATOM 7 C4' G B 40 0.347 -91.015 34.194 1.00 79.73 C
ATOM 8 O4' G B 40 1.003 -91.870 35.161 1.00 79.46 O
ATOM 9 C3' G B 40 0.307 -91.793 32.879 1.00 80.83 C
ATOM 10 O3' G B 40 1.202 -91.189 31.953 1.00 80.74 O
ATOM 11 C2' G B 40 0.817 -93.195 33.256 1.00 81.21 C
ATOM 12 O2' G B 40 1.574 -93.834 32.243 1.00 81.87 O
ATOM 13 C1' G B 40 1.671 -92.902 34.478 1.00 80.16 C
ATOM 14 N9 G B 40 1.858 -94.037 35.391 1.00 80.22 N
ATOM 15 C8 G B 40 1.208 -95.241 35.454 1.00 81.03 C
ATOM 16 N7 G B 40 1.626 -96.027 36.404 1.00 80.83 N
ATOM 17 C5 G B 40 2.631 -95.284 36.995 1.00 79.82 C
ATOM 18 C6 G B 40 3.476 -95.583 38.081 1.00 79.16 C
ATOM 19 O6 G B 40 3.487 -96.621 38.739 1.00 79.38 O
ATOM 20 N1 G B 40 4.369 -94.562 38.401 1.00 78.19 N
ATOM 21 C2 G B 40 4.428 -93.387 37.724 1.00 77.90 C
ATOM 22 N2 G B 40 5.327 -92.518 38.132 1.00 76.97 N
ATOM 23 N3 G B 40 3.647 -93.091 36.707 1.00 78.50 N
ATOM 24 C4 G B 40 2.787 -94.077 36.391 1.00 79.44 C
ATOM 25 P A B 41 0.792 -91.074 30.413 1.00 77.01 P
ATOM 26 OP1 A B 41 -0.614 -91.501 30.327 1.00 77.70 O
ATOM 27 OP2 A B 41 1.859 -91.833 29.609 1.00 77.54 O
ATOM 28 O5' A B 41 0.886 -89.510 30.143 1.00 76.33 O
TER
ATOM 2 P C A 43 9.806 -86.722 31.703 1.00 62.00 P
ATOM 3 OP1 C A 43 11.151 -86.263 31.312 1.00 61.65 O
ATOM 4 OP2 C A 43 9.124 -87.714 30.846 1.00 63.14 O
ATOM 5 O5' C A 43 9.802 -87.238 33.206 1.00 61.44 O
ATOM 6 C5' C A 43 10.583 -86.619 34.203 1.00 60.39 C
ATOM 7 C4' C A 43 10.206 -87.092 35.588 1.00 59.98 C
ATOM 8 O4' C A 43 8.790 -86.885 35.837 1.00 60.14 O
ATOM 9 C3' C A 43 10.345 -88.563 35.856 1.00 60.52 C
ATOM 10 O3' C A 43 11.661 -88.995 35.940 1.00 60.34 O
ATOM 11 C2' C A 43 9.563 -88.700 37.136 1.00 60.13 C
ATOM 12 O2' C A 43 10.239 -88.049 38.206 1.00 59.07 O
ATOM 13 C1' C A 43 8.346 -87.866 36.766 1.00 60.25 C
ATOM 14 N1 C A 43 7.323 -88.697 36.126 1.00 61.27 N
ATOM 15 C2 C A 43 6.560 -89.533 36.954 1.00 61.47 C
ATOM 16 O2 C A 43 6.748 -89.515 38.181 1.00 60.78 O
ATOM 17 N3 C A 43 5.635 -90.358 36.416 1.00 62.43 N
ATOM 18 C4 C A 43 5.457 -90.340 35.101 1.00 63.16 C
ATOM 19 N4 C A 43 4.506 -91.139 34.593 1.00 64.11 N
ATOM 20 C5 C A 43 6.225 -89.495 34.232 1.00 62.98 C
ATOM 21 C6 C A 43 7.142 -88.691 34.784 1.00 62.03 C
ATOM 22 P A A 44 12.121 -90.175 34.981 1.00 75.70 P
ATOM 23 OP1 A A 44 13.583 -90.009 34.749 1.00 75.37 O
ATOM 24 OP2 A A 44 11.225 -90.141 33.850 1.00 76.53 O
ATOM 25 O5' A A 44 11.836 -91.457 35.867 1.00 75.95 O
TER
ATOM 1 O3' C B 39 -3.699 -90.219 35.602 1.00 74.68 O
ATOM 2 P G B 40 -2.891 -91.456 36.257 1.00 79.91 P
ATOM 3 OP1 G B 40 -3.808 -92.638 36.238 1.00 80.83 O
ATOM 4 OP2 G B 40 -2.347 -90.993 37.563 1.00 78.84 O
ATOM 5 O5' G B 40 -1.701 -91.687 35.235 1.00 80.17 O
ATOM 6 C5' G B 40 -0.976 -90.591 34.727 1.00 79.64 C
ATOM 7 C4' G B 40 0.347 -91.015 34.194 1.00 79.73 C
ATOM 8 O4' G B 40 1.003 -91.870 35.161 1.00 79.46 O
ATOM 9 C3' G B 40 0.307 -91.793 32.879 1.00 80.83 C
ATOM 10 O3' G B 40 1.202 -91.189 31.953 1.00 80.74 O
ATOM 11 C2' G B 40 0.817 -93.195 33.256 1.00 81.21 C
ATOM 12 O2' G B 40 1.574 -93.834 32.243 1.00 81.87 O
ATOM 13 C1' G B 40 1.671 -92.902 34.478 1.00 80.16 C
ATOM 14 N9 G B 40 1.858 -94.037 35.391 1.00 80.22 N
ATOM 15 C8 G B 40 1.208 -95.241 35.454 1.00 81.03 C
ATOM 16 N7 G B 40 1.626 -96.027 36.404 1.00 80.83 N
ATOM 17 C5 G B 40 2.631 -95.284 36.995 1.00 79.82 C
ATOM 18 C6 G B 40 3.476 -95.583 38.081 1.00 79.16 C
ATOM 19 O6 G B 40 3.487 -96.621 38.739 1.00 79.38 O
ATOM 20 N1 G B 40 4.369 -94.562 38.401 1.00 78.19 N
ATOM 21 C2 G B 40 4.428 -93.387 37.724 1.00 77.90 C
ATOM 22 N2 G B 40 5.327 -92.518 38.132 1.00 76.97 N
ATOM 23 N3 G B 40 3.647 -93.091 36.707 1.00 78.50 N
ATOM 24 C4 G B 40 2.787 -94.077 36.391 1.00 79.44 C
ATOM 25 P A B 41 0.792 -91.074 30.413 1.00 77.01 P
ATOM 26 OP1 A B 41 -0.614 -91.501 30.327 1.00 77.70 O
ATOM 27 OP2 A B 41 1.859 -91.833 29.609 1.00 77.54 O
ATOM 28 O5' A B 41 0.886 -89.510 30.143 1.00 76.33 O
TER
Atoms:
C2: (6.560,-89.533,36.954)
OP1: (11.151,-86.263,31.312)
OP2: (9.124,-87.714,30.846)
C4: (5.457,-90.340,35.101)
O5': (9.802,-87.238,33.206)
C3': (10.345,-88.563,35.856)
C1': (8.346,-87.866,36.766)
O4': (8.790,-86.885,35.837)
C5': (10.583,-86.619,34.203)
P: (9.806,-86.722,31.703)
O2: (6.748,-89.515,38.181)
C4': (10.206,-87.092,35.588)
C2': (9.563,-88.700,37.136)
O2': (10.239,-88.049,38.206)
N1: (7.323,-88.697,36.126)
N3: (5.635,-90.358,36.416)
N4: (4.506,-91.139,34.593)
C6: (7.142,-88.691,34.784)
C5: (6.225,-89.495,34.232)
O3': (11.661,-88.995,35.940)
OP1: (11.151,-86.263,31.312)
OP2: (9.124,-87.714,30.846)
C4: (5.457,-90.340,35.101)
O5': (9.802,-87.238,33.206)
C3': (10.345,-88.563,35.856)
C1': (8.346,-87.866,36.766)
O4': (8.790,-86.885,35.837)
C5': (10.583,-86.619,34.203)
P: (9.806,-86.722,31.703)
O2: (6.748,-89.515,38.181)
C4': (10.206,-87.092,35.588)
C2': (9.563,-88.700,37.136)
O2': (10.239,-88.049,38.206)
N1: (7.323,-88.697,36.126)
N3: (5.635,-90.358,36.416)
N4: (4.506,-91.139,34.593)
C6: (7.142,-88.691,34.784)
C5: (6.225,-89.495,34.232)
O3': (11.661,-88.995,35.940)
OP1: (-3.808,-92.638,36.238)
OP2: (-2.347,-90.993,37.563)
C3': (0.307,-91.793,32.879)
C1': (1.671,-92.902,34.478)
C5': (-0.976,-90.591,34.727)
O6: (3.487,-96.621,38.739)
O4': (1.003,-91.870,35.161)
C8: (1.208,-95.241,35.454)
C2: (4.428,-93.387,37.724)
C6: (3.476,-95.583,38.081)
C5: (2.631,-95.284,36.995)
C4: (2.787,-94.077,36.391)
P: (-2.891,-91.456,36.257)
C4': (0.347,-91.015,34.194)
C2': (0.817,-93.195,33.256)
O2': (1.574,-93.834,32.243)
N1: (4.369,-94.562,38.401)
N2: (5.327,-92.518,38.132)
N3: (3.647,-93.091,36.707)
N7: (1.626,-96.027,36.404)
N9: (1.858,-94.037,35.391)
O5': (-1.701,-91.687,35.235)
O3': (1.202,-91.189,31.953)
OP2: (-2.347,-90.993,37.563)
C3': (0.307,-91.793,32.879)
C1': (1.671,-92.902,34.478)
C5': (-0.976,-90.591,34.727)
O6: (3.487,-96.621,38.739)
O4': (1.003,-91.870,35.161)
C8: (1.208,-95.241,35.454)
C2: (4.428,-93.387,37.724)
C6: (3.476,-95.583,38.081)
C5: (2.631,-95.284,36.995)
C4: (2.787,-94.077,36.391)
P: (-2.891,-91.456,36.257)
C4': (0.347,-91.015,34.194)
C2': (0.817,-93.195,33.256)
O2': (1.574,-93.834,32.243)
N1: (4.369,-94.562,38.401)
N2: (5.327,-92.518,38.132)
N3: (3.647,-93.091,36.707)
N7: (1.626,-96.027,36.404)
N9: (1.858,-94.037,35.391)
O5': (-1.701,-91.687,35.235)
O3': (1.202,-91.189,31.953)
Image (generated by PyMOL):