ClaRNA

Doublet info:

Details

Nucleotide types: UA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1692:1691

Extra

PDB:
ATOM 1 O3' A A 691 61.863 -58.840 54.832 1.00 59.48 O
ATOM 2 P U A 692 61.015 -59.677 55.943 1.00 55.41 P
ATOM 3 OP1 U A 692 59.556 -59.422 55.672 1.00 55.21 O
ATOM 4 OP2 U A 692 61.547 -59.361 57.295 1.00 55.27 O
ATOM 5 O5' U A 692 61.358 -61.160 55.557 1.00 55.96 O
ATOM 6 C5' U A 692 60.829 -61.703 54.371 1.00 56.18 C
ATOM 7 C4' U A 692 61.239 -63.118 54.206 1.00 56.72 C
ATOM 8 O4' U A 692 62.664 -63.169 54.031 1.00 56.90 O
ATOM 9 C3' U A 692 60.972 -64.020 55.386 1.00 56.93 C
ATOM 10 O3' U A 692 59.637 -64.473 55.410 1.00 56.97 O
ATOM 11 C2' U A 692 61.984 -65.123 55.159 1.00 57.45 C
ATOM 12 O2' U A 692 61.559 -65.988 54.124 1.00 57.80 O
ATOM 13 C1' U A 692 63.175 -64.332 54.629 1.00 57.32 C
ATOM 14 N1 U A 692 64.103 -63.957 55.720 1.00 57.21 N
ATOM 15 C2 U A 692 65.036 -64.912 56.125 1.00 57.64 C
ATOM 16 O2 U A 692 65.178 -66.016 55.631 1.00 58.09 O
ATOM 17 N3 U A 692 65.809 -64.520 57.156 1.00 57.52 N
ATOM 18 C4 U A 692 65.712 -63.326 57.788 1.00 57.05 C
ATOM 19 O4 U A 692 66.463 -63.096 58.702 1.00 57.02 O
ATOM 20 C5 U A 692 64.749 -62.409 57.320 1.00 56.64 C
ATOM 21 C6 U A 692 63.970 -62.740 56.317 1.00 56.73 C
ATOM 22 P C A 693 58.991 -65.178 56.725 1.00 59.75 P
ATOM 23 OP1 C A 693 57.525 -65.282 56.454 1.00 59.68 O
ATOM 24 OP2 C A 693 59.445 -64.423 57.938 1.00 59.45 O
ATOM 25 O5' C A 693 59.645 -66.626 56.748 1.00 60.34 O
TER

ATOM 1 O3' A B 690 65.732 -54.665 56.448 1.00 51.21 O
ATOM 2 P A B 691 64.605 -55.477 57.272 1.00 58.56 P
ATOM 3 OP1 A B 691 63.437 -54.547 57.404 1.00 58.15 O
ATOM 4 OP2 A B 691 65.235 -56.039 58.514 1.00 58.75 O
ATOM 5 O5' A B 691 64.247 -56.652 56.293 1.00 58.94 O
ATOM 6 C5' A B 691 63.837 -56.378 54.986 1.00 58.89 C
ATOM 7 C4' A B 691 63.875 -57.619 54.168 1.00 59.34 C
ATOM 8 O4' A B 691 65.255 -58.003 53.930 1.00 59.63 O
ATOM 9 C3' A B 691 63.281 -58.857 54.805 1.00 59.63 C
ATOM 10 O3' A B 691 61.863 -58.840 54.832 1.00 59.48 O
ATOM 11 C2' A B 691 63.883 -59.928 53.915 1.00 60.12 C
ATOM 12 O2' A B 691 63.293 -59.889 52.630 1.00 60.14 O
ATOM 13 C1' A B 691 65.319 -59.404 53.771 1.00 60.11 C
ATOM 14 N9 A B 691 66.232 -59.991 54.794 1.00 60.34 N
ATOM 15 C8 A B 691 66.624 -59.586 56.053 1.00 60.17 C
ATOM 16 N7 A B 691 67.428 -60.423 56.663 1.00 60.51 N
ATOM 17 C5 A B 691 67.554 -61.447 55.740 1.00 60.93 C
ATOM 18 C6 A B 691 68.258 -62.651 55.763 1.00 61.44 C
ATOM 19 N6 A B 691 69.016 -63.043 56.802 1.00 61.62 N
ATOM 20 N1 A B 691 68.165 -63.444 54.671 1.00 61.78 N
ATOM 21 C2 A B 691 67.431 -63.018 53.650 1.00 61.61 C
ATOM 22 N3 A B 691 66.737 -61.910 53.523 1.00 61.14 N
ATOM 23 C4 A B 691 66.838 -61.192 54.613 1.00 60.83 C
ATOM 24 P U B 692 61.015 -59.677 55.943 1.00 55.41 P
ATOM 25 OP1 U B 692 59.556 -59.422 55.672 1.00 55.21 O
ATOM 26 OP2 U B 692 61.547 -59.361 57.295 1.00 55.27 O
ATOM 27 O5' U B 692 61.358 -61.160 55.557 1.00 55.96 O
TER

Atoms:
C4: (65.712,-63.326,57.788)
N3: (65.809,-64.520,57.156)
OP1: (59.556,-59.422,55.672)
OP2: (61.547,-59.361,57.295)
C2: (65.036,-64.912,56.125)
C1': (63.175,-64.332,54.629)
C3': (60.972,-64.020,55.386)
O5': (61.358,-61.160,55.557)
O4': (62.664,-63.169,54.031)
C5': (60.829,-61.703,54.371)
P: (61.015,-59.677,55.943)
C4': (61.239,-63.118,54.206)
C2': (61.984,-65.123,55.159)
O2': (61.559,-65.988,54.124)
N1: (64.103,-63.957,55.720)
O4: (66.463,-63.096,58.702)
O2: (65.178,-66.016,55.631)
C6: (63.970,-62.740,56.317)
C5: (64.749,-62.409,57.320)
O3': (59.637,-64.473,55.410)
OP1: (63.437,-54.547,57.404)
OP2: (65.235,-56.039,58.514)
C3': (63.281,-58.857,54.805)
C1': (65.319,-59.404,53.771)
C5': (63.837,-56.378,54.986)
O4': (65.255,-58.003,53.930)
C8: (66.624,-59.586,56.053)
O2': (63.293,-59.889,52.630)
C6: (68.258,-62.651,55.763)
C5: (67.554,-61.447,55.740)
C4: (66.838,-61.192,54.613)
P: (64.605,-55.477,57.272)
C4': (63.875,-57.619,54.168)
C2': (63.883,-59.928,53.915)
C2: (67.431,-63.018,53.650)
N1: (68.165,-63.444,54.671)
N3: (66.737,-61.910,53.523)
N6: (69.016,-63.043,56.802)
N7: (67.428,-60.423,56.663)
N9: (66.232,-59.991,54.794)
O5': (64.247,-56.652,56.293)
O3': (61.863,-58.840,54.832)
Image (generated by PyMOL):
PyMOL image
show in jmol