Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:131:145
Extra
PDB:
ATOM 1 O3' G A 30 37.012 -22.734 105.026 1.00 35.00 O
ATOM 2 P A A 31 36.838 -23.718 103.781 1.00 36.37 P
ATOM 3 OP1 A A 31 35.743 -23.169 102.976 1.00 36.14 O
ATOM 4 OP2 A A 31 36.731 -25.088 104.321 1.00 36.61 O
ATOM 5 O5' A A 31 38.214 -23.554 103.004 1.00 36.19 O
ATOM 6 C5' A A 31 38.251 -23.288 101.628 1.00 35.86 C
ATOM 7 C4' A A 31 38.014 -21.834 101.368 1.00 35.70 C
ATOM 8 O4' A A 31 38.982 -21.039 102.080 1.00 35.82 O
ATOM 9 C3' A A 31 38.134 -21.420 99.925 1.00 35.36 C
ATOM 10 O3' A A 31 36.919 -21.589 99.276 1.00 35.23 O
ATOM 11 C2' A A 31 38.541 -19.963 100.023 1.00 35.30 C
ATOM 12 O2' A A 31 37.416 -19.134 100.279 1.00 35.30 O
ATOM 13 C1' A A 31 39.410 -19.972 101.271 1.00 35.58 C
ATOM 14 N9 A A 31 40.824 -20.172 100.948 1.00 35.55 N
ATOM 15 C8 A A 31 41.604 -21.263 101.198 1.00 35.69 C
ATOM 16 N7 A A 31 42.835 -21.161 100.773 1.00 35.62 N
ATOM 17 C5 A A 31 42.816 -19.914 100.203 1.00 35.42 C
ATOM 18 C6 A A 31 43.821 -19.209 99.607 1.00 35.28 C
ATOM 19 N6 A A 31 45.011 -19.742 99.524 1.00 35.34 N
ATOM 20 N1 A A 31 43.558 -17.988 99.131 1.00 35.11 N
ATOM 21 C2 A A 31 42.317 -17.519 99.284 1.00 35.09 C
ATOM 22 N3 A A 31 41.260 -18.090 99.865 1.00 35.21 N
ATOM 23 C4 A A 31 41.595 -19.300 100.289 1.00 35.37 C
ATOM 24 P A A 32 36.686 -22.671 98.137 1.00 34.61 P
ATOM 25 OP1 A A 32 35.257 -23.055 98.210 1.00 34.65 O
ATOM 26 OP2 A A 32 37.684 -23.715 98.285 1.00 34.72 O
ATOM 27 O5' A A 32 36.981 -21.806 96.850 1.00 34.30 O
TER
ATOM 1 O3' C B 44 48.539 -25.438 95.570 1.00 36.27 O
ATOM 2 P A B 45 48.882 -25.146 97.092 1.00 32.89 P
ATOM 3 OP1 A B 45 47.772 -24.343 97.642 1.00 32.87 O
ATOM 4 OP2 A B 45 50.276 -24.564 97.148 1.00 32.94 O
ATOM 5 O5' A B 45 48.846 -26.578 97.735 1.00 33.16 O
ATOM 6 C5' A B 45 49.166 -26.733 99.093 1.00 33.48 C
ATOM 7 C4' A B 45 48.034 -27.319 99.852 1.00 33.64 C
ATOM 8 O4' A B 45 46.952 -26.344 99.968 1.00 33.50 O
ATOM 9 C3' A B 45 47.421 -28.571 99.236 1.00 33.61 C
ATOM 10 O3' A B 45 47.134 -29.481 100.275 1.00 33.92 O
ATOM 11 C2' A B 45 46.126 -28.022 98.645 1.00 33.36 C
ATOM 12 O2' A B 45 45.089 -28.954 98.409 1.00 33.37 O
ATOM 13 C1' A B 45 45.751 -27.017 99.704 1.00 33.46 C
ATOM 14 N9 A B 45 44.709 -26.072 99.287 1.00 33.23 N
ATOM 15 C8 A B 45 44.787 -25.049 98.433 1.00 32.96 C
ATOM 16 N7 A B 45 43.652 -24.448 98.282 1.00 32.83 N
ATOM 17 C5 A B 45 42.770 -25.155 99.040 1.00 33.02 C
ATOM 18 C6 A B 45 41.391 -24.996 99.248 1.00 33.01 C
ATOM 19 N6 A B 45 40.703 -24.008 98.688 1.00 32.79 N
ATOM 20 N1 A B 45 40.781 -25.869 100.088 1.00 33.25 N
ATOM 21 C2 A B 45 41.547 -26.814 100.639 1.00 33.48 C
ATOM 22 N3 A B 45 42.832 -27.050 100.467 1.00 33.51 N
ATOM 23 C4 A B 45 43.397 -26.172 99.657 1.00 33.27 C
ATOM 24 P A B 46 48.022 -30.810 100.433 1.00 36.45 P
ATOM 25 OP1 A B 46 49.427 -30.470 100.206 1.00 36.44 O
ATOM 26 OP2 A B 46 47.432 -31.766 99.594 1.00 36.36 O
ATOM 27 O5' A B 46 47.832 -31.245 101.960 1.00 36.83 O
TER
ATOM 2 P A A 31 36.838 -23.718 103.781 1.00 36.37 P
ATOM 3 OP1 A A 31 35.743 -23.169 102.976 1.00 36.14 O
ATOM 4 OP2 A A 31 36.731 -25.088 104.321 1.00 36.61 O
ATOM 5 O5' A A 31 38.214 -23.554 103.004 1.00 36.19 O
ATOM 6 C5' A A 31 38.251 -23.288 101.628 1.00 35.86 C
ATOM 7 C4' A A 31 38.014 -21.834 101.368 1.00 35.70 C
ATOM 8 O4' A A 31 38.982 -21.039 102.080 1.00 35.82 O
ATOM 9 C3' A A 31 38.134 -21.420 99.925 1.00 35.36 C
ATOM 10 O3' A A 31 36.919 -21.589 99.276 1.00 35.23 O
ATOM 11 C2' A A 31 38.541 -19.963 100.023 1.00 35.30 C
ATOM 12 O2' A A 31 37.416 -19.134 100.279 1.00 35.30 O
ATOM 13 C1' A A 31 39.410 -19.972 101.271 1.00 35.58 C
ATOM 14 N9 A A 31 40.824 -20.172 100.948 1.00 35.55 N
ATOM 15 C8 A A 31 41.604 -21.263 101.198 1.00 35.69 C
ATOM 16 N7 A A 31 42.835 -21.161 100.773 1.00 35.62 N
ATOM 17 C5 A A 31 42.816 -19.914 100.203 1.00 35.42 C
ATOM 18 C6 A A 31 43.821 -19.209 99.607 1.00 35.28 C
ATOM 19 N6 A A 31 45.011 -19.742 99.524 1.00 35.34 N
ATOM 20 N1 A A 31 43.558 -17.988 99.131 1.00 35.11 N
ATOM 21 C2 A A 31 42.317 -17.519 99.284 1.00 35.09 C
ATOM 22 N3 A A 31 41.260 -18.090 99.865 1.00 35.21 N
ATOM 23 C4 A A 31 41.595 -19.300 100.289 1.00 35.37 C
ATOM 24 P A A 32 36.686 -22.671 98.137 1.00 34.61 P
ATOM 25 OP1 A A 32 35.257 -23.055 98.210 1.00 34.65 O
ATOM 26 OP2 A A 32 37.684 -23.715 98.285 1.00 34.72 O
ATOM 27 O5' A A 32 36.981 -21.806 96.850 1.00 34.30 O
TER
ATOM 1 O3' C B 44 48.539 -25.438 95.570 1.00 36.27 O
ATOM 2 P A B 45 48.882 -25.146 97.092 1.00 32.89 P
ATOM 3 OP1 A B 45 47.772 -24.343 97.642 1.00 32.87 O
ATOM 4 OP2 A B 45 50.276 -24.564 97.148 1.00 32.94 O
ATOM 5 O5' A B 45 48.846 -26.578 97.735 1.00 33.16 O
ATOM 6 C5' A B 45 49.166 -26.733 99.093 1.00 33.48 C
ATOM 7 C4' A B 45 48.034 -27.319 99.852 1.00 33.64 C
ATOM 8 O4' A B 45 46.952 -26.344 99.968 1.00 33.50 O
ATOM 9 C3' A B 45 47.421 -28.571 99.236 1.00 33.61 C
ATOM 10 O3' A B 45 47.134 -29.481 100.275 1.00 33.92 O
ATOM 11 C2' A B 45 46.126 -28.022 98.645 1.00 33.36 C
ATOM 12 O2' A B 45 45.089 -28.954 98.409 1.00 33.37 O
ATOM 13 C1' A B 45 45.751 -27.017 99.704 1.00 33.46 C
ATOM 14 N9 A B 45 44.709 -26.072 99.287 1.00 33.23 N
ATOM 15 C8 A B 45 44.787 -25.049 98.433 1.00 32.96 C
ATOM 16 N7 A B 45 43.652 -24.448 98.282 1.00 32.83 N
ATOM 17 C5 A B 45 42.770 -25.155 99.040 1.00 33.02 C
ATOM 18 C6 A B 45 41.391 -24.996 99.248 1.00 33.01 C
ATOM 19 N6 A B 45 40.703 -24.008 98.688 1.00 32.79 N
ATOM 20 N1 A B 45 40.781 -25.869 100.088 1.00 33.25 N
ATOM 21 C2 A B 45 41.547 -26.814 100.639 1.00 33.48 C
ATOM 22 N3 A B 45 42.832 -27.050 100.467 1.00 33.51 N
ATOM 23 C4 A B 45 43.397 -26.172 99.657 1.00 33.27 C
ATOM 24 P A B 46 48.022 -30.810 100.433 1.00 36.45 P
ATOM 25 OP1 A B 46 49.427 -30.470 100.206 1.00 36.44 O
ATOM 26 OP2 A B 46 47.432 -31.766 99.594 1.00 36.36 O
ATOM 27 O5' A B 46 47.832 -31.245 101.960 1.00 36.83 O
TER
Atoms:
OP1: (35.743,-23.169,102.976)
OP2: (36.731,-25.088,104.321)
C3': (38.134,-21.420,99.925)
C1': (39.410,-19.972,101.271)
C5': (38.251,-23.288,101.628)
O4': (38.982,-21.039,102.080)
C8: (41.604,-21.263,101.198)
O2': (37.416,-19.134,100.279)
C6: (43.821,-19.209,99.607)
C5: (42.816,-19.914,100.203)
C4: (41.595,-19.300,100.289)
P: (36.838,-23.718,103.781)
C4': (38.014,-21.834,101.368)
C2': (38.541,-19.963,100.023)
C2: (42.317,-17.519,99.284)
N1: (43.558,-17.988,99.131)
N3: (41.260,-18.090,99.865)
N6: (45.011,-19.742,99.524)
N7: (42.835,-21.161,100.773)
N9: (40.824,-20.172,100.948)
O5': (38.214,-23.554,103.004)
O3': (36.919,-21.589,99.276)
OP2: (36.731,-25.088,104.321)
C3': (38.134,-21.420,99.925)
C1': (39.410,-19.972,101.271)
C5': (38.251,-23.288,101.628)
O4': (38.982,-21.039,102.080)
C8: (41.604,-21.263,101.198)
O2': (37.416,-19.134,100.279)
C6: (43.821,-19.209,99.607)
C5: (42.816,-19.914,100.203)
C4: (41.595,-19.300,100.289)
P: (36.838,-23.718,103.781)
C4': (38.014,-21.834,101.368)
C2': (38.541,-19.963,100.023)
C2: (42.317,-17.519,99.284)
N1: (43.558,-17.988,99.131)
N3: (41.260,-18.090,99.865)
N6: (45.011,-19.742,99.524)
N7: (42.835,-21.161,100.773)
N9: (40.824,-20.172,100.948)
O5': (38.214,-23.554,103.004)
O3': (36.919,-21.589,99.276)
OP1: (47.772,-24.343,97.642)
OP2: (50.276,-24.564,97.148)
C3': (47.421,-28.571,99.236)
C1': (45.751,-27.017,99.704)
C5': (49.166,-26.733,99.093)
O4': (46.952,-26.344,99.968)
C8: (44.787,-25.049,98.433)
O2': (45.089,-28.954,98.409)
C6: (41.391,-24.996,99.248)
C5: (42.770,-25.155,99.040)
C4: (43.397,-26.172,99.657)
P: (48.882,-25.146,97.092)
C4': (48.034,-27.319,99.852)
C2': (46.126,-28.022,98.645)
C2: (41.547,-26.814,100.639)
N1: (40.781,-25.869,100.088)
N3: (42.832,-27.050,100.467)
N6: (40.703,-24.008,98.688)
N7: (43.652,-24.448,98.282)
N9: (44.709,-26.072,99.287)
O5': (48.846,-26.578,97.735)
O3': (47.134,-29.481,100.275)
OP2: (50.276,-24.564,97.148)
C3': (47.421,-28.571,99.236)
C1': (45.751,-27.017,99.704)
C5': (49.166,-26.733,99.093)
O4': (46.952,-26.344,99.968)
C8: (44.787,-25.049,98.433)
O2': (45.089,-28.954,98.409)
C6: (41.391,-24.996,99.248)
C5: (42.770,-25.155,99.040)
C4: (43.397,-26.172,99.657)
P: (48.882,-25.146,97.092)
C4': (48.034,-27.319,99.852)
C2': (46.126,-28.022,98.645)
C2: (41.547,-26.814,100.639)
N1: (40.781,-25.869,100.088)
N3: (42.832,-27.050,100.467)
N6: (40.703,-24.008,98.688)
N7: (43.652,-24.448,98.282)
N9: (44.709,-26.072,99.287)
O5': (48.846,-26.578,97.735)
O3': (47.134,-29.481,100.275)
Image (generated by PyMOL):