Doublet info:
Details
Nucleotide types:
AA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:1998:12389
Extra
PDB:
ATOM 1 O3' A A 997 35.968 -46.021 21.310 1.00 45.09 O
ATOM 2 P A A 998 36.953 -46.382 22.546 1.00 48.11 P
ATOM 3 OP1 A A 998 38.215 -46.939 21.954 1.00 48.37 O
ATOM 4 OP2 A A 998 36.182 -47.213 23.525 1.00 48.07 O
ATOM 5 O5' A A 998 37.226 -44.952 23.205 1.00 47.56 O
ATOM 6 C5' A A 998 38.454 -44.276 23.030 1.00 47.40 C
ATOM 7 C4' A A 998 38.353 -43.231 21.957 1.00 47.47 C
ATOM 8 O4' A A 998 37.122 -42.475 22.110 1.00 47.30 O
ATOM 9 C3' A A 998 39.421 -42.166 21.973 1.00 47.18 C
ATOM 10 O3' A A 998 40.655 -42.630 21.466 1.00 47.39 O
ATOM 11 C2' A A 998 38.762 -41.067 21.145 1.00 47.20 C
ATOM 12 O2' A A 998 38.722 -41.439 19.775 1.00 47.70 O
ATOM 13 C1' A A 998 37.333 -41.142 21.679 1.00 47.12 C
ATOM 14 N9 A A 998 37.103 -40.246 22.827 1.00 46.61 N
ATOM 15 C8 A A 998 36.590 -40.608 24.050 1.00 46.37 C
ATOM 16 N7 A A 998 36.492 -39.630 24.893 1.00 45.94 N
ATOM 17 C5 A A 998 36.934 -38.560 24.158 1.00 45.90 C
ATOM 18 C6 A A 998 37.057 -37.235 24.471 1.00 45.55 C
ATOM 19 N6 A A 998 36.697 -36.783 25.652 1.00 45.16 N
ATOM 20 N1 A A 998 37.554 -36.394 23.567 1.00 45.62 N
ATOM 21 C2 A A 998 37.889 -36.876 22.390 1.00 46.03 C
ATOM 22 N3 A A 998 37.805 -38.126 21.951 1.00 46.40 N
ATOM 23 C4 A A 998 37.324 -38.916 22.904 1.00 46.30 C
ATOM 24 P A A 999 41.994 -42.546 22.371 1.00 46.14 P
ATOM 25 OP1 A A 999 43.103 -43.142 21.561 1.00 46.48 O
ATOM 26 OP2 A A 999 41.681 -43.147 23.724 1.00 45.90 O
ATOM 27 O5' A A 999 42.211 -40.983 22.499 1.00 45.75 O
TER
ATOM 1 O3' A B2388 36.665 -36.199 32.001 1.00 41.05 O
ATOM 2 P A B2389 37.283 -37.667 32.094 1.00 44.83 P
ATOM 3 OP1 A B2389 37.686 -37.864 33.496 1.00 44.54 O
ATOM 4 OP2 A B2389 38.322 -37.774 31.026 1.00 45.06 O
ATOM 5 O5' A B2389 36.055 -38.636 31.764 1.00 45.14 O
ATOM 6 C5' A B2389 35.431 -39.390 32.795 1.00 45.09 C
ATOM 7 C4' A B2389 35.426 -40.872 32.511 1.00 45.46 C
ATOM 8 O4' A B2389 35.038 -41.130 31.141 1.00 45.85 O
ATOM 9 C3' A B2389 36.742 -41.597 32.637 1.00 45.53 C
ATOM 10 O3' A B2389 37.144 -41.814 33.980 1.00 45.27 O
ATOM 11 C2' A B2389 36.440 -42.879 31.902 1.00 45.99 C
ATOM 12 O2' A B2389 35.637 -43.712 32.693 1.00 46.03 O
ATOM 13 C1' A B2389 35.614 -42.355 30.724 1.00 46.18 C
ATOM 14 N9 A B2389 36.497 -42.110 29.566 1.00 46.37 N
ATOM 15 C8 A B2389 37.067 -40.932 29.227 1.00 46.17 C
ATOM 16 N7 A B2389 37.872 -41.012 28.221 1.00 46.40 N
ATOM 17 C5 A B2389 37.883 -42.339 27.893 1.00 46.78 C
ATOM 18 C6 A B2389 38.591 -43.024 26.897 1.00 47.16 C
ATOM 19 N6 A B2389 39.428 -42.406 26.048 1.00 47.21 N
ATOM 20 N1 A B2389 38.387 -44.348 26.789 1.00 47.50 N
ATOM 21 C2 A B2389 37.519 -44.889 27.645 1.00 47.44 C
ATOM 22 N3 A B2389 36.822 -44.339 28.637 1.00 47.09 N
ATOM 23 C4 A B2389 37.053 -43.031 28.713 1.00 46.76 C
ATOM 24 P C B2390 38.645 -41.434 34.483 1.00 40.27 P
ATOM 25 OP1 C B2390 38.492 -40.224 35.357 1.00 39.84 O
ATOM 26 OP2 C B2390 39.508 -41.327 33.277 1.00 40.48 O
ATOM 27 O5' C B2390 39.066 -42.695 35.370 1.00 40.35 O
TER
ATOM 2 P A A 998 36.953 -46.382 22.546 1.00 48.11 P
ATOM 3 OP1 A A 998 38.215 -46.939 21.954 1.00 48.37 O
ATOM 4 OP2 A A 998 36.182 -47.213 23.525 1.00 48.07 O
ATOM 5 O5' A A 998 37.226 -44.952 23.205 1.00 47.56 O
ATOM 6 C5' A A 998 38.454 -44.276 23.030 1.00 47.40 C
ATOM 7 C4' A A 998 38.353 -43.231 21.957 1.00 47.47 C
ATOM 8 O4' A A 998 37.122 -42.475 22.110 1.00 47.30 O
ATOM 9 C3' A A 998 39.421 -42.166 21.973 1.00 47.18 C
ATOM 10 O3' A A 998 40.655 -42.630 21.466 1.00 47.39 O
ATOM 11 C2' A A 998 38.762 -41.067 21.145 1.00 47.20 C
ATOM 12 O2' A A 998 38.722 -41.439 19.775 1.00 47.70 O
ATOM 13 C1' A A 998 37.333 -41.142 21.679 1.00 47.12 C
ATOM 14 N9 A A 998 37.103 -40.246 22.827 1.00 46.61 N
ATOM 15 C8 A A 998 36.590 -40.608 24.050 1.00 46.37 C
ATOM 16 N7 A A 998 36.492 -39.630 24.893 1.00 45.94 N
ATOM 17 C5 A A 998 36.934 -38.560 24.158 1.00 45.90 C
ATOM 18 C6 A A 998 37.057 -37.235 24.471 1.00 45.55 C
ATOM 19 N6 A A 998 36.697 -36.783 25.652 1.00 45.16 N
ATOM 20 N1 A A 998 37.554 -36.394 23.567 1.00 45.62 N
ATOM 21 C2 A A 998 37.889 -36.876 22.390 1.00 46.03 C
ATOM 22 N3 A A 998 37.805 -38.126 21.951 1.00 46.40 N
ATOM 23 C4 A A 998 37.324 -38.916 22.904 1.00 46.30 C
ATOM 24 P A A 999 41.994 -42.546 22.371 1.00 46.14 P
ATOM 25 OP1 A A 999 43.103 -43.142 21.561 1.00 46.48 O
ATOM 26 OP2 A A 999 41.681 -43.147 23.724 1.00 45.90 O
ATOM 27 O5' A A 999 42.211 -40.983 22.499 1.00 45.75 O
TER
ATOM 1 O3' A B2388 36.665 -36.199 32.001 1.00 41.05 O
ATOM 2 P A B2389 37.283 -37.667 32.094 1.00 44.83 P
ATOM 3 OP1 A B2389 37.686 -37.864 33.496 1.00 44.54 O
ATOM 4 OP2 A B2389 38.322 -37.774 31.026 1.00 45.06 O
ATOM 5 O5' A B2389 36.055 -38.636 31.764 1.00 45.14 O
ATOM 6 C5' A B2389 35.431 -39.390 32.795 1.00 45.09 C
ATOM 7 C4' A B2389 35.426 -40.872 32.511 1.00 45.46 C
ATOM 8 O4' A B2389 35.038 -41.130 31.141 1.00 45.85 O
ATOM 9 C3' A B2389 36.742 -41.597 32.637 1.00 45.53 C
ATOM 10 O3' A B2389 37.144 -41.814 33.980 1.00 45.27 O
ATOM 11 C2' A B2389 36.440 -42.879 31.902 1.00 45.99 C
ATOM 12 O2' A B2389 35.637 -43.712 32.693 1.00 46.03 O
ATOM 13 C1' A B2389 35.614 -42.355 30.724 1.00 46.18 C
ATOM 14 N9 A B2389 36.497 -42.110 29.566 1.00 46.37 N
ATOM 15 C8 A B2389 37.067 -40.932 29.227 1.00 46.17 C
ATOM 16 N7 A B2389 37.872 -41.012 28.221 1.00 46.40 N
ATOM 17 C5 A B2389 37.883 -42.339 27.893 1.00 46.78 C
ATOM 18 C6 A B2389 38.591 -43.024 26.897 1.00 47.16 C
ATOM 19 N6 A B2389 39.428 -42.406 26.048 1.00 47.21 N
ATOM 20 N1 A B2389 38.387 -44.348 26.789 1.00 47.50 N
ATOM 21 C2 A B2389 37.519 -44.889 27.645 1.00 47.44 C
ATOM 22 N3 A B2389 36.822 -44.339 28.637 1.00 47.09 N
ATOM 23 C4 A B2389 37.053 -43.031 28.713 1.00 46.76 C
ATOM 24 P C B2390 38.645 -41.434 34.483 1.00 40.27 P
ATOM 25 OP1 C B2390 38.492 -40.224 35.357 1.00 39.84 O
ATOM 26 OP2 C B2390 39.508 -41.327 33.277 1.00 40.48 O
ATOM 27 O5' C B2390 39.066 -42.695 35.370 1.00 40.35 O
TER
Atoms:
OP1: (38.215,-46.939,21.954)
OP2: (36.182,-47.213,23.525)
C3': (39.421,-42.166,21.973)
C1': (37.333,-41.142,21.679)
C5': (38.454,-44.276,23.030)
O4': (37.122,-42.475,22.110)
C8: (36.590,-40.608,24.050)
O2': (38.722,-41.439,19.775)
C6: (37.057,-37.235,24.471)
C5: (36.934,-38.560,24.158)
C4: (37.324,-38.916,22.904)
P: (36.953,-46.382,22.546)
C4': (38.353,-43.231,21.957)
C2': (38.762,-41.067,21.145)
C2: (37.889,-36.876,22.390)
N1: (37.554,-36.394,23.567)
N3: (37.805,-38.126,21.951)
N6: (36.697,-36.783,25.652)
N7: (36.492,-39.630,24.893)
N9: (37.103,-40.246,22.827)
O5': (37.226,-44.952,23.205)
O3': (40.655,-42.630,21.466)
OP2: (36.182,-47.213,23.525)
C3': (39.421,-42.166,21.973)
C1': (37.333,-41.142,21.679)
C5': (38.454,-44.276,23.030)
O4': (37.122,-42.475,22.110)
C8: (36.590,-40.608,24.050)
O2': (38.722,-41.439,19.775)
C6: (37.057,-37.235,24.471)
C5: (36.934,-38.560,24.158)
C4: (37.324,-38.916,22.904)
P: (36.953,-46.382,22.546)
C4': (38.353,-43.231,21.957)
C2': (38.762,-41.067,21.145)
C2: (37.889,-36.876,22.390)
N1: (37.554,-36.394,23.567)
N3: (37.805,-38.126,21.951)
N6: (36.697,-36.783,25.652)
N7: (36.492,-39.630,24.893)
N9: (37.103,-40.246,22.827)
O5': (37.226,-44.952,23.205)
O3': (40.655,-42.630,21.466)
OP1: (37.686,-37.864,33.496)
OP2: (38.322,-37.774,31.026)
C3': (36.742,-41.597,32.637)
C1': (35.614,-42.355,30.724)
C5': (35.431,-39.390,32.795)
O4': (35.038,-41.130,31.141)
C8: (37.067,-40.932,29.227)
O2': (35.637,-43.712,32.693)
C6: (38.591,-43.024,26.897)
C5: (37.883,-42.339,27.893)
C4: (37.053,-43.031,28.713)
P: (37.283,-37.667,32.094)
C4': (35.426,-40.872,32.511)
C2': (36.440,-42.879,31.902)
C2: (37.519,-44.889,27.645)
N1: (38.387,-44.348,26.789)
N3: (36.822,-44.339,28.637)
N6: (39.428,-42.406,26.048)
N7: (37.872,-41.012,28.221)
N9: (36.497,-42.110,29.566)
O5': (36.055,-38.636,31.764)
O3': (37.144,-41.814,33.980)
OP2: (38.322,-37.774,31.026)
C3': (36.742,-41.597,32.637)
C1': (35.614,-42.355,30.724)
C5': (35.431,-39.390,32.795)
O4': (35.038,-41.130,31.141)
C8: (37.067,-40.932,29.227)
O2': (35.637,-43.712,32.693)
C6: (38.591,-43.024,26.897)
C5: (37.883,-42.339,27.893)
C4: (37.053,-43.031,28.713)
P: (37.283,-37.667,32.094)
C4': (35.426,-40.872,32.511)
C2': (36.440,-42.879,31.902)
C2: (37.519,-44.889,27.645)
N1: (38.387,-44.348,26.789)
N3: (36.822,-44.339,28.637)
N6: (39.428,-42.406,26.048)
N7: (37.872,-41.012,28.221)
N9: (36.497,-42.110,29.566)
O5': (36.055,-38.636,31.764)
O3': (37.144,-41.814,33.980)
Image (generated by PyMOL):