Doublet info:
Details
Nucleotide types:
UU
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12089:12117
Extra
PDB:
ATOM 1 O3' A A2088 -2.338 5.570 74.649 1.00 54.26 O
ATOM 2 P U A2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 3 OP1 U A2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 4 OP2 U A2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 5 O5' U A2089 -2.577 3.224 73.688 1.00 50.69 O
ATOM 6 C5' U A2089 -2.417 2.430 74.851 1.00 50.61 C
ATOM 7 C4' U A2089 -2.785 0.998 74.614 1.00 50.56 C
ATOM 8 O4' U A2089 -3.637 0.577 75.705 1.00 50.73 O
ATOM 9 C3' U A2089 -3.565 0.720 73.343 1.00 50.67 C
ATOM 10 O3' U A2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 11 C2' U A2089 -5.001 0.807 73.844 1.00 50.99 C
ATOM 12 O2' U A2089 -5.964 0.147 73.050 1.00 51.13 O
ATOM 13 C1' U A2089 -4.888 0.183 75.219 1.00 50.95 C
ATOM 14 N1 U A2089 -5.898 0.662 76.142 1.00 51.23 N
ATOM 15 C2 U A2089 -6.716 -0.256 76.774 1.00 51.36 C
ATOM 16 O2 U A2089 -6.566 -1.437 76.602 1.00 51.24 O
ATOM 17 N3 U A2089 -7.698 0.238 77.611 1.00 51.65 N
ATOM 18 C4 U A2089 -7.875 1.591 77.807 1.00 51.81 C
ATOM 19 O4 U A2089 -8.752 1.954 78.549 1.00 52.08 O
ATOM 20 C5 U A2089 -6.995 2.493 77.117 1.00 51.67 C
ATOM 21 C6 U A2089 -6.051 2.006 76.319 1.00 51.39 C
ATOM 22 P G A2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 23 OP1 G A2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 24 OP2 G A2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 25 O5' G A2090 -3.850 -0.424 70.464 1.00 44.35 O
TER
ATOM 1 O3' A B2116 -7.984 -6.117 72.916 1.00 60.76 O
ATOM 2 P U B2117 -9.450 -6.033 73.526 1.00 51.90 P
ATOM 3 OP1 U B2117 -9.602 -7.180 74.418 1.00 51.91 O
ATOM 4 OP2 U B2117 -10.381 -5.876 72.377 1.00 52.12 O
ATOM 5 O5' U B2117 -9.449 -4.707 74.357 1.00 51.97 O
ATOM 6 C5' U B2117 -8.541 -4.481 75.386 1.00 51.80 C
ATOM 7 C4' U B2117 -9.008 -3.322 76.165 1.00 51.99 C
ATOM 8 O4' U B2117 -10.166 -2.758 75.509 1.00 52.27 O
ATOM 9 C3' U B2117 -9.490 -3.680 77.513 1.00 52.13 C
ATOM 10 O3' U B2117 -8.436 -3.739 78.426 1.00 51.92 O
ATOM 11 C2' U B2117 -10.547 -2.630 77.810 1.00 52.45 C
ATOM 12 O2' U B2117 -9.952 -1.409 78.183 1.00 52.40 O
ATOM 13 C1' U B2117 -11.155 -2.446 76.442 1.00 52.55 C
ATOM 14 N1 U B2117 -12.338 -3.333 76.201 1.00 52.78 N
ATOM 15 C2 U B2117 -13.439 -3.226 77.023 1.00 53.08 C
ATOM 16 O2 U B2117 -13.500 -2.483 77.978 1.00 53.18 O
ATOM 17 N3 U B2117 -14.483 -4.028 76.716 1.00 53.29 N
ATOM 18 C4 U B2117 -14.615 -4.910 75.689 1.00 53.25 C
ATOM 19 O4 U B2117 -15.681 -5.545 75.614 1.00 53.50 O
ATOM 20 C5 U B2117 -13.472 -4.981 74.848 1.00 52.94 C
ATOM 21 C6 U B2117 -12.420 -4.207 75.130 1.00 52.72 C
ATOM 22 P G B2118 -8.366 -4.947 79.427 1.00 46.92 P
ATOM 23 OP1 G B2118 -7.156 -4.742 80.252 1.00 46.71 O
ATOM 24 OP2 G B2118 -8.517 -6.202 78.633 1.00 46.86 O
ATOM 25 O5' G B2118 -9.659 -4.716 80.317 1.00 47.27 O
TER
ATOM 2 P U A2089 -3.314 4.645 73.761 1.00 50.98 P
ATOM 3 OP1 U A2089 -3.361 5.279 72.414 1.00 51.03 O
ATOM 4 OP2 U A2089 -4.596 4.501 74.507 1.00 51.25 O
ATOM 5 O5' U A2089 -2.577 3.224 73.688 1.00 50.69 O
ATOM 6 C5' U A2089 -2.417 2.430 74.851 1.00 50.61 C
ATOM 7 C4' U A2089 -2.785 0.998 74.614 1.00 50.56 C
ATOM 8 O4' U A2089 -3.637 0.577 75.705 1.00 50.73 O
ATOM 9 C3' U A2089 -3.565 0.720 73.343 1.00 50.67 C
ATOM 10 O3' U A2089 -3.289 -0.613 72.891 1.00 50.50 O
ATOM 11 C2' U A2089 -5.001 0.807 73.844 1.00 50.99 C
ATOM 12 O2' U A2089 -5.964 0.147 73.050 1.00 51.13 O
ATOM 13 C1' U A2089 -4.888 0.183 75.219 1.00 50.95 C
ATOM 14 N1 U A2089 -5.898 0.662 76.142 1.00 51.23 N
ATOM 15 C2 U A2089 -6.716 -0.256 76.774 1.00 51.36 C
ATOM 16 O2 U A2089 -6.566 -1.437 76.602 1.00 51.24 O
ATOM 17 N3 U A2089 -7.698 0.238 77.611 1.00 51.65 N
ATOM 18 C4 U A2089 -7.875 1.591 77.807 1.00 51.81 C
ATOM 19 O4 U A2089 -8.752 1.954 78.549 1.00 52.08 O
ATOM 20 C5 U A2089 -6.995 2.493 77.117 1.00 51.67 C
ATOM 21 C6 U A2089 -6.051 2.006 76.319 1.00 51.39 C
ATOM 22 P G A2090 -2.691 -0.875 71.415 1.00 44.08 P
ATOM 23 OP1 G A2090 -2.477 -2.294 71.273 1.00 43.95 O
ATOM 24 OP2 G A2090 -1.545 0.027 71.227 1.00 43.91 O
ATOM 25 O5' G A2090 -3.850 -0.424 70.464 1.00 44.35 O
TER
ATOM 1 O3' A B2116 -7.984 -6.117 72.916 1.00 60.76 O
ATOM 2 P U B2117 -9.450 -6.033 73.526 1.00 51.90 P
ATOM 3 OP1 U B2117 -9.602 -7.180 74.418 1.00 51.91 O
ATOM 4 OP2 U B2117 -10.381 -5.876 72.377 1.00 52.12 O
ATOM 5 O5' U B2117 -9.449 -4.707 74.357 1.00 51.97 O
ATOM 6 C5' U B2117 -8.541 -4.481 75.386 1.00 51.80 C
ATOM 7 C4' U B2117 -9.008 -3.322 76.165 1.00 51.99 C
ATOM 8 O4' U B2117 -10.166 -2.758 75.509 1.00 52.27 O
ATOM 9 C3' U B2117 -9.490 -3.680 77.513 1.00 52.13 C
ATOM 10 O3' U B2117 -8.436 -3.739 78.426 1.00 51.92 O
ATOM 11 C2' U B2117 -10.547 -2.630 77.810 1.00 52.45 C
ATOM 12 O2' U B2117 -9.952 -1.409 78.183 1.00 52.40 O
ATOM 13 C1' U B2117 -11.155 -2.446 76.442 1.00 52.55 C
ATOM 14 N1 U B2117 -12.338 -3.333 76.201 1.00 52.78 N
ATOM 15 C2 U B2117 -13.439 -3.226 77.023 1.00 53.08 C
ATOM 16 O2 U B2117 -13.500 -2.483 77.978 1.00 53.18 O
ATOM 17 N3 U B2117 -14.483 -4.028 76.716 1.00 53.29 N
ATOM 18 C4 U B2117 -14.615 -4.910 75.689 1.00 53.25 C
ATOM 19 O4 U B2117 -15.681 -5.545 75.614 1.00 53.50 O
ATOM 20 C5 U B2117 -13.472 -4.981 74.848 1.00 52.94 C
ATOM 21 C6 U B2117 -12.420 -4.207 75.130 1.00 52.72 C
ATOM 22 P G B2118 -8.366 -4.947 79.427 1.00 46.92 P
ATOM 23 OP1 G B2118 -7.156 -4.742 80.252 1.00 46.71 O
ATOM 24 OP2 G B2118 -8.517 -6.202 78.633 1.00 46.86 O
ATOM 25 O5' G B2118 -9.659 -4.716 80.317 1.00 47.27 O
TER
Atoms:
C4: (-7.875,1.591,77.807)
N3: (-7.698,0.238,77.611)
OP1: (-3.361,5.279,72.414)
OP2: (-4.596,4.501,74.507)
C2: (-6.716,-0.256,76.774)
C1': (-4.888,0.183,75.219)
C3': (-3.565,0.720,73.343)
O5': (-2.577,3.224,73.688)
O4': (-3.637,0.577,75.705)
C5': (-2.417,2.430,74.851)
P: (-3.314,4.645,73.761)
C4': (-2.785,0.998,74.614)
C2': (-5.001,0.807,73.844)
O2': (-5.964,0.147,73.050)
N1: (-5.898,0.662,76.142)
O4: (-8.752,1.954,78.549)
O2: (-6.566,-1.437,76.602)
C6: (-6.051,2.006,76.319)
C5: (-6.995,2.493,77.117)
O3': (-3.289,-0.613,72.891)
N3: (-7.698,0.238,77.611)
OP1: (-3.361,5.279,72.414)
OP2: (-4.596,4.501,74.507)
C2: (-6.716,-0.256,76.774)
C1': (-4.888,0.183,75.219)
C3': (-3.565,0.720,73.343)
O5': (-2.577,3.224,73.688)
O4': (-3.637,0.577,75.705)
C5': (-2.417,2.430,74.851)
P: (-3.314,4.645,73.761)
C4': (-2.785,0.998,74.614)
C2': (-5.001,0.807,73.844)
O2': (-5.964,0.147,73.050)
N1: (-5.898,0.662,76.142)
O4: (-8.752,1.954,78.549)
O2: (-6.566,-1.437,76.602)
C6: (-6.051,2.006,76.319)
C5: (-6.995,2.493,77.117)
O3': (-3.289,-0.613,72.891)
C4: (-14.615,-4.910,75.689)
N3: (-14.483,-4.028,76.716)
OP1: (-9.602,-7.180,74.418)
OP2: (-10.381,-5.876,72.377)
C2: (-13.439,-3.226,77.023)
C1': (-11.155,-2.446,76.442)
C3': (-9.490,-3.680,77.513)
O5': (-9.449,-4.707,74.357)
O4': (-10.166,-2.758,75.509)
C5': (-8.541,-4.481,75.386)
P: (-9.450,-6.033,73.526)
C4': (-9.008,-3.322,76.165)
C2': (-10.547,-2.630,77.810)
O2': (-9.952,-1.409,78.183)
N1: (-12.338,-3.333,76.201)
O4: (-15.681,-5.545,75.614)
O2: (-13.500,-2.483,77.978)
C6: (-12.420,-4.207,75.130)
C5: (-13.472,-4.981,74.848)
O3': (-8.436,-3.739,78.426)
N3: (-14.483,-4.028,76.716)
OP1: (-9.602,-7.180,74.418)
OP2: (-10.381,-5.876,72.377)
C2: (-13.439,-3.226,77.023)
C1': (-11.155,-2.446,76.442)
C3': (-9.490,-3.680,77.513)
O5': (-9.449,-4.707,74.357)
O4': (-10.166,-2.758,75.509)
C5': (-8.541,-4.481,75.386)
P: (-9.450,-6.033,73.526)
C4': (-9.008,-3.322,76.165)
C2': (-10.547,-2.630,77.810)
O2': (-9.952,-1.409,78.183)
N1: (-12.338,-3.333,76.201)
O4: (-15.681,-5.545,75.614)
O2: (-13.500,-2.483,77.978)
C6: (-12.420,-4.207,75.130)
C5: (-13.472,-4.981,74.848)
O3': (-8.436,-3.739,78.426)
Image (generated by PyMOL):