Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2GDI:X13:X14
Extra
PDB:
ATOM 1 O3' C A 12 -12.263 -13.707 13.934 1.00 31.55 O
ATOM 2 P C A 13 -11.628 -13.080 15.263 1.00 32.24 P
ATOM 3 OP1 C A 13 -12.497 -13.465 16.394 1.00 32.21 O
ATOM 4 OP2 C A 13 -11.322 -11.656 15.004 1.00 32.95 O
ATOM 5 O5' C A 13 -10.233 -13.855 15.382 1.00 33.47 O
ATOM 6 C5' C A 13 -10.195 -15.278 15.325 1.00 34.53 C
ATOM 7 C4' C A 13 -8.762 -15.763 15.181 1.00 34.23 C
ATOM 8 O4' C A 13 -8.186 -15.208 13.969 1.00 34.52 O
ATOM 9 C3' C A 13 -7.840 -15.334 16.319 1.00 35.21 C
ATOM 10 O3' C A 13 -6.892 -16.349 16.585 1.00 36.97 O
ATOM 11 C2' C A 13 -7.142 -14.112 15.738 1.00 34.18 C
ATOM 12 O2' C A 13 -5.882 -13.875 16.334 1.00 34.09 O
ATOM 13 C1' C A 13 -6.972 -14.561 14.293 1.00 32.80 C
ATOM 14 N1 C A 13 -6.733 -13.410 13.382 1.00 32.89 N
ATOM 15 C2 C A 13 -5.524 -13.330 12.681 1.00 32.64 C
ATOM 16 O2 C A 13 -4.691 -14.241 12.811 1.00 31.61 O
ATOM 17 N3 C A 13 -5.306 -12.259 11.877 1.00 31.58 N
ATOM 18 C4 C A 13 -6.231 -11.301 11.775 1.00 31.63 C
ATOM 19 N4 C A 13 -5.973 -10.268 10.968 1.00 30.02 N
ATOM 20 C5 C A 13 -7.466 -11.361 12.491 1.00 32.72 C
ATOM 21 C6 C A 13 -7.670 -12.421 13.281 1.00 33.06 C
ATOM 22 P C A 14 -7.068 -17.332 17.831 1.00 38.71 P
ATOM 23 OP1 C A 14 -8.078 -18.355 17.475 1.00 38.24 O
ATOM 24 OP2 C A 14 -7.239 -16.507 19.048 1.00 39.10 O
ATOM 25 O5' C A 14 -5.613 -18.001 17.882 1.00 40.02 O
TER
ATOM 1 O3' C B 13 -6.892 -16.349 16.585 1.00 36.97 O
ATOM 2 P C B 14 -7.068 -17.332 17.831 1.00 38.71 P
ATOM 3 OP1 C B 14 -8.078 -18.355 17.475 1.00 38.24 O
ATOM 4 OP2 C B 14 -7.239 -16.507 19.048 1.00 39.10 O
ATOM 5 O5' C B 14 -5.613 -18.001 17.882 1.00 40.02 O
ATOM 6 C5' C B 14 -5.405 -19.299 18.423 1.00 40.17 C
ATOM 7 C4' C B 14 -4.189 -19.945 17.780 1.00 40.55 C
ATOM 8 O4' C B 14 -4.488 -20.247 16.395 1.00 40.45 O
ATOM 9 C3' C B 14 -2.945 -19.070 17.681 1.00 40.93 C
ATOM 10 O3' C B 14 -2.234 -19.029 18.918 1.00 41.11 O
ATOM 11 C2' C B 14 -2.165 -19.799 16.590 1.00 40.71 C
ATOM 12 O2' C B 14 -1.451 -20.917 17.080 1.00 41.80 O
ATOM 13 C1' C B 14 -3.279 -20.276 15.659 1.00 39.91 C
ATOM 14 N1 C B 14 -3.410 -19.452 14.419 1.00 39.23 N
ATOM 15 C2 C B 14 -3.006 -19.993 13.192 1.00 39.30 C
ATOM 16 O2 C B 14 -2.561 -21.147 13.154 1.00 39.92 O
ATOM 17 N3 C B 14 -3.115 -19.235 12.074 1.00 38.80 N
ATOM 18 C4 C B 14 -3.596 -17.993 12.151 1.00 38.19 C
ATOM 19 N4 C B 14 -3.683 -17.290 11.019 1.00 37.93 N
ATOM 20 C5 C B 14 -4.002 -17.420 13.392 1.00 38.44 C
ATOM 21 C6 C B 14 -3.891 -18.177 14.490 1.00 38.98 C
ATOM 22 P U B 15 -1.571 -17.661 19.429 1.00 41.67 P
ATOM 23 OP1 U B 15 -0.975 -17.919 20.759 1.00 41.62 O
ATOM 24 OP2 U B 15 -2.565 -16.574 19.282 1.00 41.71 O
ATOM 25 O5' U B 15 -0.401 -17.404 18.364 1.00 40.67 O
TER
ATOM 2 P C A 13 -11.628 -13.080 15.263 1.00 32.24 P
ATOM 3 OP1 C A 13 -12.497 -13.465 16.394 1.00 32.21 O
ATOM 4 OP2 C A 13 -11.322 -11.656 15.004 1.00 32.95 O
ATOM 5 O5' C A 13 -10.233 -13.855 15.382 1.00 33.47 O
ATOM 6 C5' C A 13 -10.195 -15.278 15.325 1.00 34.53 C
ATOM 7 C4' C A 13 -8.762 -15.763 15.181 1.00 34.23 C
ATOM 8 O4' C A 13 -8.186 -15.208 13.969 1.00 34.52 O
ATOM 9 C3' C A 13 -7.840 -15.334 16.319 1.00 35.21 C
ATOM 10 O3' C A 13 -6.892 -16.349 16.585 1.00 36.97 O
ATOM 11 C2' C A 13 -7.142 -14.112 15.738 1.00 34.18 C
ATOM 12 O2' C A 13 -5.882 -13.875 16.334 1.00 34.09 O
ATOM 13 C1' C A 13 -6.972 -14.561 14.293 1.00 32.80 C
ATOM 14 N1 C A 13 -6.733 -13.410 13.382 1.00 32.89 N
ATOM 15 C2 C A 13 -5.524 -13.330 12.681 1.00 32.64 C
ATOM 16 O2 C A 13 -4.691 -14.241 12.811 1.00 31.61 O
ATOM 17 N3 C A 13 -5.306 -12.259 11.877 1.00 31.58 N
ATOM 18 C4 C A 13 -6.231 -11.301 11.775 1.00 31.63 C
ATOM 19 N4 C A 13 -5.973 -10.268 10.968 1.00 30.02 N
ATOM 20 C5 C A 13 -7.466 -11.361 12.491 1.00 32.72 C
ATOM 21 C6 C A 13 -7.670 -12.421 13.281 1.00 33.06 C
ATOM 22 P C A 14 -7.068 -17.332 17.831 1.00 38.71 P
ATOM 23 OP1 C A 14 -8.078 -18.355 17.475 1.00 38.24 O
ATOM 24 OP2 C A 14 -7.239 -16.507 19.048 1.00 39.10 O
ATOM 25 O5' C A 14 -5.613 -18.001 17.882 1.00 40.02 O
TER
ATOM 1 O3' C B 13 -6.892 -16.349 16.585 1.00 36.97 O
ATOM 2 P C B 14 -7.068 -17.332 17.831 1.00 38.71 P
ATOM 3 OP1 C B 14 -8.078 -18.355 17.475 1.00 38.24 O
ATOM 4 OP2 C B 14 -7.239 -16.507 19.048 1.00 39.10 O
ATOM 5 O5' C B 14 -5.613 -18.001 17.882 1.00 40.02 O
ATOM 6 C5' C B 14 -5.405 -19.299 18.423 1.00 40.17 C
ATOM 7 C4' C B 14 -4.189 -19.945 17.780 1.00 40.55 C
ATOM 8 O4' C B 14 -4.488 -20.247 16.395 1.00 40.45 O
ATOM 9 C3' C B 14 -2.945 -19.070 17.681 1.00 40.93 C
ATOM 10 O3' C B 14 -2.234 -19.029 18.918 1.00 41.11 O
ATOM 11 C2' C B 14 -2.165 -19.799 16.590 1.00 40.71 C
ATOM 12 O2' C B 14 -1.451 -20.917 17.080 1.00 41.80 O
ATOM 13 C1' C B 14 -3.279 -20.276 15.659 1.00 39.91 C
ATOM 14 N1 C B 14 -3.410 -19.452 14.419 1.00 39.23 N
ATOM 15 C2 C B 14 -3.006 -19.993 13.192 1.00 39.30 C
ATOM 16 O2 C B 14 -2.561 -21.147 13.154 1.00 39.92 O
ATOM 17 N3 C B 14 -3.115 -19.235 12.074 1.00 38.80 N
ATOM 18 C4 C B 14 -3.596 -17.993 12.151 1.00 38.19 C
ATOM 19 N4 C B 14 -3.683 -17.290 11.019 1.00 37.93 N
ATOM 20 C5 C B 14 -4.002 -17.420 13.392 1.00 38.44 C
ATOM 21 C6 C B 14 -3.891 -18.177 14.490 1.00 38.98 C
ATOM 22 P U B 15 -1.571 -17.661 19.429 1.00 41.67 P
ATOM 23 OP1 U B 15 -0.975 -17.919 20.759 1.00 41.62 O
ATOM 24 OP2 U B 15 -2.565 -16.574 19.282 1.00 41.71 O
ATOM 25 O5' U B 15 -0.401 -17.404 18.364 1.00 40.67 O
TER
Atoms:
C2: (-5.524,-13.330,12.681)
OP1: (-12.497,-13.465,16.394)
OP2: (-11.322,-11.656,15.004)
C4: (-6.231,-11.301,11.775)
O5': (-10.233,-13.855,15.382)
C3': (-7.840,-15.334,16.319)
C1': (-6.972,-14.561,14.293)
O4': (-8.186,-15.208,13.969)
C5': (-10.195,-15.278,15.325)
P: (-11.628,-13.080,15.263)
O2: (-4.691,-14.241,12.811)
C4': (-8.762,-15.763,15.181)
C2': (-7.142,-14.112,15.738)
O2': (-5.882,-13.875,16.334)
N1: (-6.733,-13.410,13.382)
N3: (-5.306,-12.259,11.877)
N4: (-5.973,-10.268,10.968)
C6: (-7.670,-12.421,13.281)
C5: (-7.466,-11.361,12.491)
O3': (-6.892,-16.349,16.585)
OP1: (-12.497,-13.465,16.394)
OP2: (-11.322,-11.656,15.004)
C4: (-6.231,-11.301,11.775)
O5': (-10.233,-13.855,15.382)
C3': (-7.840,-15.334,16.319)
C1': (-6.972,-14.561,14.293)
O4': (-8.186,-15.208,13.969)
C5': (-10.195,-15.278,15.325)
P: (-11.628,-13.080,15.263)
O2: (-4.691,-14.241,12.811)
C4': (-8.762,-15.763,15.181)
C2': (-7.142,-14.112,15.738)
O2': (-5.882,-13.875,16.334)
N1: (-6.733,-13.410,13.382)
N3: (-5.306,-12.259,11.877)
N4: (-5.973,-10.268,10.968)
C6: (-7.670,-12.421,13.281)
C5: (-7.466,-11.361,12.491)
O3': (-6.892,-16.349,16.585)
C2: (-3.006,-19.993,13.192)
OP1: (-8.078,-18.355,17.475)
OP2: (-7.239,-16.507,19.048)
C4: (-3.596,-17.993,12.151)
O5': (-5.613,-18.001,17.882)
C3': (-2.945,-19.070,17.681)
C1': (-3.279,-20.276,15.659)
O4': (-4.488,-20.247,16.395)
C5': (-5.405,-19.299,18.423)
P: (-7.068,-17.332,17.831)
O2: (-2.561,-21.147,13.154)
C4': (-4.189,-19.945,17.780)
C2': (-2.165,-19.799,16.590)
O2': (-1.451,-20.917,17.080)
N1: (-3.410,-19.452,14.419)
N3: (-3.115,-19.235,12.074)
N4: (-3.683,-17.290,11.019)
C6: (-3.891,-18.177,14.490)
C5: (-4.002,-17.420,13.392)
O3': (-2.234,-19.029,18.918)
OP1: (-8.078,-18.355,17.475)
OP2: (-7.239,-16.507,19.048)
C4: (-3.596,-17.993,12.151)
O5': (-5.613,-18.001,17.882)
C3': (-2.945,-19.070,17.681)
C1': (-3.279,-20.276,15.659)
O4': (-4.488,-20.247,16.395)
C5': (-5.405,-19.299,18.423)
P: (-7.068,-17.332,17.831)
O2: (-2.561,-21.147,13.154)
C4': (-4.189,-19.945,17.780)
C2': (-2.165,-19.799,16.590)
O2': (-1.451,-20.917,17.080)
N1: (-3.410,-19.452,14.419)
N3: (-3.115,-19.235,12.074)
N4: (-3.683,-17.290,11.019)
C6: (-3.891,-18.177,14.490)
C5: (-4.002,-17.420,13.392)
O3': (-2.234,-19.029,18.918)
Image (generated by PyMOL):