Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD1:A2078:A2105
Extra
PDB:
ATOM 1 O3' G A2077 107.044 105.448 33.817 1.00 64.43 O
ATOM 2 P C A2078 108.439 105.877 33.152 1.00 66.62 P
ATOM 3 OP1 C A2078 108.296 105.744 31.678 1.00 67.85 O
ATOM 4 OP2 C A2078 109.475 105.063 33.875 1.00 65.54 O
ATOM 5 O5' C A2078 108.587 107.432 33.517 1.00 66.01 O
ATOM 6 C5' C A2078 107.660 108.406 32.977 1.00 66.55 C
ATOM 7 C4' C A2078 107.814 109.755 33.655 1.00 66.69 C
ATOM 8 O4' C A2078 107.483 109.690 35.069 1.00 67.01 O
ATOM 9 C3' C A2078 109.198 110.360 33.591 1.00 66.77 C
ATOM 10 O3' C A2078 109.355 110.998 32.338 1.00 66.78 O
ATOM 11 C2' C A2078 109.206 111.322 34.778 1.00 66.81 C
ATOM 12 O2' C A2078 108.712 112.620 34.485 1.00 66.68 O
ATOM 13 C1' C A2078 108.303 110.595 35.790 1.00 66.80 C
ATOM 14 N1 C A2078 109.043 109.824 36.818 1.00 66.90 N
ATOM 15 C2 C A2078 109.574 110.498 37.958 1.00 68.09 C
ATOM 16 O2 C A2078 109.356 111.715 38.106 1.00 69.80 O
ATOM 17 N3 C A2078 110.299 109.785 38.866 1.00 66.81 N
ATOM 18 C4 C A2078 110.499 108.479 38.675 1.00 66.07 C
ATOM 19 N4 C A2078 111.260 107.832 39.553 1.00 66.42 N
ATOM 20 C5 C A2078 109.940 107.778 37.561 1.00 65.01 C
ATOM 21 C6 C A2078 109.229 108.478 36.673 1.00 65.41 C
ATOM 22 P U A2079 110.792 111.023 31.630 1.00 68.37 P
ATOM 23 OP1 U A2079 111.537 112.132 32.253 1.00 68.26 O
ATOM 24 OP2 U A2079 110.600 111.003 30.149 1.00 68.55 O
ATOM 25 O5' U A2079 111.498 109.656 32.052 1.00 67.19 O
TER
ATOM 1 O3' A B2104 116.817 108.073 39.570 1.00 76.16 O
ATOM 2 P C B2105 116.074 106.944 40.451 1.00 76.47 P
ATOM 3 OP1 C B2105 116.927 105.712 40.541 1.00 75.93 O
ATOM 4 OP2 C B2105 114.703 106.827 39.892 1.00 74.88 O
ATOM 5 O5' C B2105 115.962 107.644 41.893 1.00 74.76 O
ATOM 6 C5' C B2105 116.877 107.314 42.983 1.00 71.49 C
ATOM 7 C4' C B2105 117.333 108.561 43.749 1.00 68.47 C
ATOM 8 O4' C B2105 118.080 109.438 42.874 1.00 67.09 O
ATOM 9 C3' C B2105 116.325 109.521 44.380 1.00 67.00 C
ATOM 10 O3' C B2105 115.790 109.080 45.617 1.00 66.35 O
ATOM 11 C2' C B2105 117.193 110.738 44.661 1.00 66.18 C
ATOM 12 O2' C B2105 118.001 110.649 45.818 1.00 67.55 O
ATOM 13 C1' C B2105 118.095 110.742 43.435 1.00 65.83 C
ATOM 14 N1 C B2105 117.582 111.695 42.459 1.00 65.07 N
ATOM 15 C2 C B2105 117.772 113.066 42.704 1.00 64.75 C
ATOM 16 O2 C B2105 118.320 113.421 43.764 1.00 62.68 O
ATOM 17 N3 C B2105 117.342 113.960 41.793 1.00 64.84 N
ATOM 18 C4 C B2105 116.730 113.536 40.685 1.00 65.68 C
ATOM 19 N4 C B2105 116.340 114.454 39.800 1.00 65.21 N
ATOM 20 C5 C B2105 116.495 112.148 40.431 1.00 65.60 C
ATOM 21 C6 C B2105 116.935 111.274 41.334 1.00 65.28 C
ATOM 22 P A B2106 114.289 109.482 46.024 1.00 64.85 P
ATOM 23 OP1 A B2106 114.042 108.964 47.391 1.00 65.16 O
ATOM 24 OP2 A B2106 113.411 109.049 44.903 1.00 65.07 O
ATOM 25 O5' A B2106 114.317 111.066 46.121 1.00 62.27 O
TER
ATOM 2 P C A2078 108.439 105.877 33.152 1.00 66.62 P
ATOM 3 OP1 C A2078 108.296 105.744 31.678 1.00 67.85 O
ATOM 4 OP2 C A2078 109.475 105.063 33.875 1.00 65.54 O
ATOM 5 O5' C A2078 108.587 107.432 33.517 1.00 66.01 O
ATOM 6 C5' C A2078 107.660 108.406 32.977 1.00 66.55 C
ATOM 7 C4' C A2078 107.814 109.755 33.655 1.00 66.69 C
ATOM 8 O4' C A2078 107.483 109.690 35.069 1.00 67.01 O
ATOM 9 C3' C A2078 109.198 110.360 33.591 1.00 66.77 C
ATOM 10 O3' C A2078 109.355 110.998 32.338 1.00 66.78 O
ATOM 11 C2' C A2078 109.206 111.322 34.778 1.00 66.81 C
ATOM 12 O2' C A2078 108.712 112.620 34.485 1.00 66.68 O
ATOM 13 C1' C A2078 108.303 110.595 35.790 1.00 66.80 C
ATOM 14 N1 C A2078 109.043 109.824 36.818 1.00 66.90 N
ATOM 15 C2 C A2078 109.574 110.498 37.958 1.00 68.09 C
ATOM 16 O2 C A2078 109.356 111.715 38.106 1.00 69.80 O
ATOM 17 N3 C A2078 110.299 109.785 38.866 1.00 66.81 N
ATOM 18 C4 C A2078 110.499 108.479 38.675 1.00 66.07 C
ATOM 19 N4 C A2078 111.260 107.832 39.553 1.00 66.42 N
ATOM 20 C5 C A2078 109.940 107.778 37.561 1.00 65.01 C
ATOM 21 C6 C A2078 109.229 108.478 36.673 1.00 65.41 C
ATOM 22 P U A2079 110.792 111.023 31.630 1.00 68.37 P
ATOM 23 OP1 U A2079 111.537 112.132 32.253 1.00 68.26 O
ATOM 24 OP2 U A2079 110.600 111.003 30.149 1.00 68.55 O
ATOM 25 O5' U A2079 111.498 109.656 32.052 1.00 67.19 O
TER
ATOM 1 O3' A B2104 116.817 108.073 39.570 1.00 76.16 O
ATOM 2 P C B2105 116.074 106.944 40.451 1.00 76.47 P
ATOM 3 OP1 C B2105 116.927 105.712 40.541 1.00 75.93 O
ATOM 4 OP2 C B2105 114.703 106.827 39.892 1.00 74.88 O
ATOM 5 O5' C B2105 115.962 107.644 41.893 1.00 74.76 O
ATOM 6 C5' C B2105 116.877 107.314 42.983 1.00 71.49 C
ATOM 7 C4' C B2105 117.333 108.561 43.749 1.00 68.47 C
ATOM 8 O4' C B2105 118.080 109.438 42.874 1.00 67.09 O
ATOM 9 C3' C B2105 116.325 109.521 44.380 1.00 67.00 C
ATOM 10 O3' C B2105 115.790 109.080 45.617 1.00 66.35 O
ATOM 11 C2' C B2105 117.193 110.738 44.661 1.00 66.18 C
ATOM 12 O2' C B2105 118.001 110.649 45.818 1.00 67.55 O
ATOM 13 C1' C B2105 118.095 110.742 43.435 1.00 65.83 C
ATOM 14 N1 C B2105 117.582 111.695 42.459 1.00 65.07 N
ATOM 15 C2 C B2105 117.772 113.066 42.704 1.00 64.75 C
ATOM 16 O2 C B2105 118.320 113.421 43.764 1.00 62.68 O
ATOM 17 N3 C B2105 117.342 113.960 41.793 1.00 64.84 N
ATOM 18 C4 C B2105 116.730 113.536 40.685 1.00 65.68 C
ATOM 19 N4 C B2105 116.340 114.454 39.800 1.00 65.21 N
ATOM 20 C5 C B2105 116.495 112.148 40.431 1.00 65.60 C
ATOM 21 C6 C B2105 116.935 111.274 41.334 1.00 65.28 C
ATOM 22 P A B2106 114.289 109.482 46.024 1.00 64.85 P
ATOM 23 OP1 A B2106 114.042 108.964 47.391 1.00 65.16 O
ATOM 24 OP2 A B2106 113.411 109.049 44.903 1.00 65.07 O
ATOM 25 O5' A B2106 114.317 111.066 46.121 1.00 62.27 O
TER
Atoms:
C2: (109.574,110.498,37.958)
OP1: (108.296,105.744,31.678)
OP2: (109.475,105.063,33.875)
C4: (110.499,108.479,38.675)
O5': (108.587,107.432,33.517)
C3': (109.198,110.360,33.591)
C1': (108.303,110.595,35.790)
O4': (107.483,109.690,35.069)
C5': (107.660,108.406,32.977)
P: (108.439,105.877,33.152)
O2: (109.356,111.715,38.106)
C4': (107.814,109.755,33.655)
C2': (109.206,111.322,34.778)
O2': (108.712,112.620,34.485)
N1: (109.043,109.824,36.818)
N3: (110.299,109.785,38.866)
N4: (111.260,107.832,39.553)
C6: (109.229,108.478,36.673)
C5: (109.940,107.778,37.561)
O3': (109.355,110.998,32.338)
OP1: (108.296,105.744,31.678)
OP2: (109.475,105.063,33.875)
C4: (110.499,108.479,38.675)
O5': (108.587,107.432,33.517)
C3': (109.198,110.360,33.591)
C1': (108.303,110.595,35.790)
O4': (107.483,109.690,35.069)
C5': (107.660,108.406,32.977)
P: (108.439,105.877,33.152)
O2: (109.356,111.715,38.106)
C4': (107.814,109.755,33.655)
C2': (109.206,111.322,34.778)
O2': (108.712,112.620,34.485)
N1: (109.043,109.824,36.818)
N3: (110.299,109.785,38.866)
N4: (111.260,107.832,39.553)
C6: (109.229,108.478,36.673)
C5: (109.940,107.778,37.561)
O3': (109.355,110.998,32.338)
C2: (117.772,113.066,42.704)
OP1: (116.927,105.712,40.541)
OP2: (114.703,106.827,39.892)
C4: (116.730,113.536,40.685)
O5': (115.962,107.644,41.893)
C3': (116.325,109.521,44.380)
C1': (118.095,110.742,43.435)
O4': (118.080,109.438,42.874)
C5': (116.877,107.314,42.983)
P: (116.074,106.944,40.451)
O2: (118.320,113.421,43.764)
C4': (117.333,108.561,43.749)
C2': (117.193,110.738,44.661)
O2': (118.001,110.649,45.818)
N1: (117.582,111.695,42.459)
N3: (117.342,113.960,41.793)
N4: (116.340,114.454,39.800)
C6: (116.935,111.274,41.334)
C5: (116.495,112.148,40.431)
O3': (115.790,109.080,45.617)
OP1: (116.927,105.712,40.541)
OP2: (114.703,106.827,39.892)
C4: (116.730,113.536,40.685)
O5': (115.962,107.644,41.893)
C3': (116.325,109.521,44.380)
C1': (118.095,110.742,43.435)
O4': (118.080,109.438,42.874)
C5': (116.877,107.314,42.983)
P: (116.074,106.944,40.451)
O2: (118.320,113.421,43.764)
C4': (117.333,108.561,43.749)
C2': (117.193,110.738,44.661)
O2': (118.001,110.649,45.818)
N1: (117.582,111.695,42.459)
N3: (117.342,113.960,41.793)
N4: (116.340,114.454,39.800)
C6: (116.935,111.274,41.334)
C5: (116.495,112.148,40.431)
O3': (115.790,109.080,45.617)
Image (generated by PyMOL):