Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:02078:02105
Extra
PDB:
ATOM 1 O3' G A2077 107.040 105.614 33.485 1.00 50.48 O
ATOM 2 P C A2078 108.436 106.066 32.817 1.00 49.39 P
ATOM 3 OP1 C A2078 108.249 105.938 31.348 1.00 47.73 O
ATOM 4 OP2 C A2078 109.549 105.351 33.490 1.00 46.31 O
ATOM 5 O5' C A2078 108.561 107.613 33.166 1.00 48.37 O
ATOM 6 C5' C A2078 107.663 108.571 32.579 1.00 48.44 C
ATOM 7 C4' C A2078 107.853 109.922 33.218 1.00 48.69 C
ATOM 8 O4' C A2078 107.558 109.831 34.633 1.00 48.29 O
ATOM 9 C3' C A2078 109.264 110.485 33.171 1.00 48.95 C
ATOM 10 O3' C A2078 109.480 111.102 31.912 1.00 51.38 O
ATOM 11 C2' C A2078 109.238 111.484 34.319 1.00 48.00 C
ATOM 12 O2' C A2078 108.547 112.670 33.974 1.00 49.17 O
ATOM 13 C1' C A2078 108.394 110.727 35.349 1.00 47.15 C
ATOM 14 N1 C A2078 109.164 109.955 36.343 1.00 45.84 N
ATOM 15 C2 C A2078 109.591 110.598 37.515 1.00 45.63 C
ATOM 16 O2 C A2078 109.341 111.806 37.667 1.00 47.84 O
ATOM 17 N3 C A2078 110.269 109.890 38.448 1.00 44.80 N
ATOM 18 C4 C A2078 110.536 108.598 38.240 1.00 44.53 C
ATOM 19 N4 C A2078 111.203 107.937 39.191 1.00 45.36 N
ATOM 20 C5 C A2078 110.129 107.925 37.049 1.00 42.76 C
ATOM 21 C6 C A2078 109.452 108.631 36.139 1.00 43.44 C
ATOM 22 P U A2079 110.955 111.159 31.273 1.00 53.63 P
ATOM 23 OP1 U A2079 111.645 112.344 31.847 1.00 53.77 O
ATOM 24 OP2 U A2079 110.810 111.035 29.796 1.00 53.14 O
ATOM 25 O5' U A2079 111.710 109.856 31.777 1.00 52.52 O
TER
ATOM 1 O3' A B2104 116.824 108.319 39.264 1.00 67.77 O
ATOM 2 P C B2105 116.086 107.195 40.153 1.00 67.23 P
ATOM 3 OP1 C B2105 116.948 105.982 40.232 1.00 66.50 O
ATOM 4 OP2 C B2105 114.698 107.066 39.638 1.00 66.17 O
ATOM 5 O5' C B2105 116.008 107.886 41.592 1.00 65.03 O
ATOM 6 C5' C B2105 116.920 107.521 42.644 1.00 62.93 C
ATOM 7 C4' C B2105 117.353 108.741 43.432 1.00 61.50 C
ATOM 8 O4' C B2105 118.050 109.669 42.559 1.00 60.54 O
ATOM 9 C3' C B2105 116.268 109.615 44.042 1.00 60.99 C
ATOM 10 O3' C B2105 115.724 109.081 45.241 1.00 60.32 O
ATOM 11 C2' C B2105 117.030 110.905 44.320 1.00 60.07 C
ATOM 12 O2' C B2105 117.812 110.851 45.494 1.00 59.71 O
ATOM 13 C1' C B2105 117.946 110.981 43.098 1.00 58.98 C
ATOM 14 N1 C B2105 117.423 111.895 42.068 1.00 57.09 N
ATOM 15 C2 C B2105 117.545 113.275 42.283 1.00 57.06 C
ATOM 16 O2 C B2105 118.068 113.677 43.340 1.00 56.89 O
ATOM 17 N3 C B2105 117.086 114.135 41.345 1.00 56.21 N
ATOM 18 C4 C B2105 116.514 113.666 40.234 1.00 56.64 C
ATOM 19 N4 C B2105 116.075 114.554 39.337 1.00 56.06 N
ATOM 20 C5 C B2105 116.367 112.266 39.993 1.00 56.34 C
ATOM 21 C6 C B2105 116.833 111.425 40.927 1.00 56.47 C
ATOM 22 P A B2106 114.228 109.477 45.678 1.00 59.58 P
ATOM 23 OP1 A B2106 114.027 108.932 47.047 1.00 61.76 O
ATOM 24 OP2 A B2106 113.305 109.072 44.584 1.00 58.86 O
ATOM 25 O5' A B2106 114.247 111.070 45.775 1.00 56.45 O
TER
ATOM 2 P C A2078 108.436 106.066 32.817 1.00 49.39 P
ATOM 3 OP1 C A2078 108.249 105.938 31.348 1.00 47.73 O
ATOM 4 OP2 C A2078 109.549 105.351 33.490 1.00 46.31 O
ATOM 5 O5' C A2078 108.561 107.613 33.166 1.00 48.37 O
ATOM 6 C5' C A2078 107.663 108.571 32.579 1.00 48.44 C
ATOM 7 C4' C A2078 107.853 109.922 33.218 1.00 48.69 C
ATOM 8 O4' C A2078 107.558 109.831 34.633 1.00 48.29 O
ATOM 9 C3' C A2078 109.264 110.485 33.171 1.00 48.95 C
ATOM 10 O3' C A2078 109.480 111.102 31.912 1.00 51.38 O
ATOM 11 C2' C A2078 109.238 111.484 34.319 1.00 48.00 C
ATOM 12 O2' C A2078 108.547 112.670 33.974 1.00 49.17 O
ATOM 13 C1' C A2078 108.394 110.727 35.349 1.00 47.15 C
ATOM 14 N1 C A2078 109.164 109.955 36.343 1.00 45.84 N
ATOM 15 C2 C A2078 109.591 110.598 37.515 1.00 45.63 C
ATOM 16 O2 C A2078 109.341 111.806 37.667 1.00 47.84 O
ATOM 17 N3 C A2078 110.269 109.890 38.448 1.00 44.80 N
ATOM 18 C4 C A2078 110.536 108.598 38.240 1.00 44.53 C
ATOM 19 N4 C A2078 111.203 107.937 39.191 1.00 45.36 N
ATOM 20 C5 C A2078 110.129 107.925 37.049 1.00 42.76 C
ATOM 21 C6 C A2078 109.452 108.631 36.139 1.00 43.44 C
ATOM 22 P U A2079 110.955 111.159 31.273 1.00 53.63 P
ATOM 23 OP1 U A2079 111.645 112.344 31.847 1.00 53.77 O
ATOM 24 OP2 U A2079 110.810 111.035 29.796 1.00 53.14 O
ATOM 25 O5' U A2079 111.710 109.856 31.777 1.00 52.52 O
TER
ATOM 1 O3' A B2104 116.824 108.319 39.264 1.00 67.77 O
ATOM 2 P C B2105 116.086 107.195 40.153 1.00 67.23 P
ATOM 3 OP1 C B2105 116.948 105.982 40.232 1.00 66.50 O
ATOM 4 OP2 C B2105 114.698 107.066 39.638 1.00 66.17 O
ATOM 5 O5' C B2105 116.008 107.886 41.592 1.00 65.03 O
ATOM 6 C5' C B2105 116.920 107.521 42.644 1.00 62.93 C
ATOM 7 C4' C B2105 117.353 108.741 43.432 1.00 61.50 C
ATOM 8 O4' C B2105 118.050 109.669 42.559 1.00 60.54 O
ATOM 9 C3' C B2105 116.268 109.615 44.042 1.00 60.99 C
ATOM 10 O3' C B2105 115.724 109.081 45.241 1.00 60.32 O
ATOM 11 C2' C B2105 117.030 110.905 44.320 1.00 60.07 C
ATOM 12 O2' C B2105 117.812 110.851 45.494 1.00 59.71 O
ATOM 13 C1' C B2105 117.946 110.981 43.098 1.00 58.98 C
ATOM 14 N1 C B2105 117.423 111.895 42.068 1.00 57.09 N
ATOM 15 C2 C B2105 117.545 113.275 42.283 1.00 57.06 C
ATOM 16 O2 C B2105 118.068 113.677 43.340 1.00 56.89 O
ATOM 17 N3 C B2105 117.086 114.135 41.345 1.00 56.21 N
ATOM 18 C4 C B2105 116.514 113.666 40.234 1.00 56.64 C
ATOM 19 N4 C B2105 116.075 114.554 39.337 1.00 56.06 N
ATOM 20 C5 C B2105 116.367 112.266 39.993 1.00 56.34 C
ATOM 21 C6 C B2105 116.833 111.425 40.927 1.00 56.47 C
ATOM 22 P A B2106 114.228 109.477 45.678 1.00 59.58 P
ATOM 23 OP1 A B2106 114.027 108.932 47.047 1.00 61.76 O
ATOM 24 OP2 A B2106 113.305 109.072 44.584 1.00 58.86 O
ATOM 25 O5' A B2106 114.247 111.070 45.775 1.00 56.45 O
TER
Atoms:
C2: (109.591,110.598,37.515)
OP1: (108.249,105.938,31.348)
OP2: (109.549,105.351,33.490)
C4: (110.536,108.598,38.240)
O5': (108.561,107.613,33.166)
C3': (109.264,110.485,33.171)
C1': (108.394,110.727,35.349)
O4': (107.558,109.831,34.633)
C5': (107.663,108.571,32.579)
P: (108.436,106.066,32.817)
O2: (109.341,111.806,37.667)
C4': (107.853,109.922,33.218)
C2': (109.238,111.484,34.319)
O2': (108.547,112.670,33.974)
N1: (109.164,109.955,36.343)
N3: (110.269,109.890,38.448)
N4: (111.203,107.937,39.191)
C6: (109.452,108.631,36.139)
C5: (110.129,107.925,37.049)
O3': (109.480,111.102,31.912)
OP1: (108.249,105.938,31.348)
OP2: (109.549,105.351,33.490)
C4: (110.536,108.598,38.240)
O5': (108.561,107.613,33.166)
C3': (109.264,110.485,33.171)
C1': (108.394,110.727,35.349)
O4': (107.558,109.831,34.633)
C5': (107.663,108.571,32.579)
P: (108.436,106.066,32.817)
O2: (109.341,111.806,37.667)
C4': (107.853,109.922,33.218)
C2': (109.238,111.484,34.319)
O2': (108.547,112.670,33.974)
N1: (109.164,109.955,36.343)
N3: (110.269,109.890,38.448)
N4: (111.203,107.937,39.191)
C6: (109.452,108.631,36.139)
C5: (110.129,107.925,37.049)
O3': (109.480,111.102,31.912)
C2: (117.545,113.275,42.283)
OP1: (116.948,105.982,40.232)
OP2: (114.698,107.066,39.638)
C4: (116.514,113.666,40.234)
O5': (116.008,107.886,41.592)
C3': (116.268,109.615,44.042)
C1': (117.946,110.981,43.098)
O4': (118.050,109.669,42.559)
C5': (116.920,107.521,42.644)
P: (116.086,107.195,40.153)
O2: (118.068,113.677,43.340)
C4': (117.353,108.741,43.432)
C2': (117.030,110.905,44.320)
O2': (117.812,110.851,45.494)
N1: (117.423,111.895,42.068)
N3: (117.086,114.135,41.345)
N4: (116.075,114.554,39.337)
C6: (116.833,111.425,40.927)
C5: (116.367,112.266,39.993)
O3': (115.724,109.081,45.241)
OP1: (116.948,105.982,40.232)
OP2: (114.698,107.066,39.638)
C4: (116.514,113.666,40.234)
O5': (116.008,107.886,41.592)
C3': (116.268,109.615,44.042)
C1': (117.946,110.981,43.098)
O4': (118.050,109.669,42.559)
C5': (116.920,107.521,42.644)
P: (116.086,107.195,40.153)
O2: (118.068,113.677,43.340)
C4': (117.353,108.741,43.432)
C2': (117.030,110.905,44.320)
O2': (117.812,110.851,45.494)
N1: (117.423,111.895,42.068)
N3: (117.086,114.135,41.345)
N4: (116.075,114.554,39.337)
C6: (116.833,111.425,40.927)
C5: (116.367,112.266,39.993)
O3': (115.724,109.081,45.241)
Image (generated by PyMOL):