Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:02078:02105
Extra
PDB:
ATOM 1 O3' G A2077 107.445 105.735 33.772 1.00 64.78 O
ATOM 2 P C A2078 108.894 106.117 33.176 1.00 65.29 P
ATOM 3 OP1 C A2078 108.807 105.915 31.704 1.00 65.38 O
ATOM 4 OP2 C A2078 109.923 105.389 33.965 1.00 63.40 O
ATOM 5 O5' C A2078 109.043 107.677 33.462 1.00 63.03 O
ATOM 6 C5' C A2078 108.102 108.612 32.907 1.00 62.01 C
ATOM 7 C4' C A2078 108.249 109.965 33.559 1.00 61.41 C
ATOM 8 O4' C A2078 107.938 109.875 34.970 1.00 60.20 O
ATOM 9 C3' C A2078 109.634 110.588 33.525 1.00 62.68 C
ATOM 10 O3' C A2078 109.833 111.209 32.265 1.00 64.49 O
ATOM 11 C2' C A2078 109.544 111.605 34.658 1.00 61.53 C
ATOM 12 O2' C A2078 108.848 112.779 34.287 1.00 63.20 O
ATOM 13 C1' C A2078 108.692 110.845 35.679 1.00 59.08 C
ATOM 14 N1 C A2078 109.458 110.170 36.743 1.00 57.02 N
ATOM 15 C2 C A2078 109.767 110.891 37.907 1.00 57.84 C
ATOM 16 O2 C A2078 109.407 112.087 37.996 1.00 59.87 O
ATOM 17 N3 C A2078 110.445 110.271 38.905 1.00 56.21 N
ATOM 18 C4 C A2078 110.806 108.992 38.774 1.00 54.40 C
ATOM 19 N4 C A2078 111.457 108.421 39.790 1.00 54.62 N
ATOM 20 C5 C A2078 110.515 108.243 37.598 1.00 52.98 C
ATOM 21 C6 C A2078 109.851 108.864 36.617 1.00 54.47 C
ATOM 22 P U A2079 111.293 111.249 31.583 1.00 66.72 P
ATOM 23 OP1 U A2079 111.911 112.546 31.963 1.00 66.28 O
ATOM 24 OP2 U A2079 111.123 110.905 30.136 1.00 63.98 O
ATOM 25 O5' U A2079 112.154 110.075 32.227 1.00 65.20 O
TER
ATOM 1 O3' A B2104 117.104 108.575 39.617 1.00 80.87 O
ATOM 2 P C B2105 116.376 107.553 40.636 1.00 80.89 P
ATOM 3 OP1 C B2105 117.179 106.298 40.735 1.00 80.54 O
ATOM 4 OP2 C B2105 114.945 107.467 40.236 1.00 79.50 O
ATOM 5 O5' C B2105 116.448 108.329 42.031 1.00 78.06 O
ATOM 6 C5' C B2105 117.291 107.859 43.105 1.00 74.27 C
ATOM 7 C4' C B2105 117.739 109.013 43.978 1.00 72.08 C
ATOM 8 O4' C B2105 118.539 109.935 43.193 1.00 70.56 O
ATOM 9 C3' C B2105 116.659 109.912 44.557 1.00 71.06 C
ATOM 10 O3' C B2105 116.018 109.361 45.697 1.00 71.37 O
ATOM 11 C2' C B2105 117.445 111.168 44.907 1.00 69.26 C
ATOM 12 O2' C B2105 118.174 111.065 46.114 1.00 69.64 O
ATOM 13 C1' C B2105 118.406 111.248 43.721 1.00 66.93 C
ATOM 14 N1 C B2105 117.898 112.138 42.666 1.00 63.39 N
ATOM 15 C2 C B2105 118.003 113.523 42.856 1.00 62.66 C
ATOM 16 O2 C B2105 118.530 113.949 43.900 1.00 62.38 O
ATOM 17 N3 C B2105 117.529 114.359 41.906 1.00 61.35 N
ATOM 18 C4 C B2105 116.973 113.862 40.799 1.00 61.32 C
ATOM 19 N4 C B2105 116.518 114.730 39.888 1.00 60.36 N
ATOM 20 C5 C B2105 116.858 112.457 40.575 1.00 60.77 C
ATOM 21 C6 C B2105 117.329 111.640 41.526 1.00 61.61 C
ATOM 22 P A B2106 114.466 109.681 45.956 1.00 70.97 P
ATOM 23 OP1 A B2106 114.092 109.073 47.259 1.00 71.48 O
ATOM 24 OP2 A B2106 113.717 109.293 44.724 1.00 69.87 O
ATOM 25 O5' A B2106 114.437 111.270 46.105 1.00 68.19 O
TER
ATOM 2 P C A2078 108.894 106.117 33.176 1.00 65.29 P
ATOM 3 OP1 C A2078 108.807 105.915 31.704 1.00 65.38 O
ATOM 4 OP2 C A2078 109.923 105.389 33.965 1.00 63.40 O
ATOM 5 O5' C A2078 109.043 107.677 33.462 1.00 63.03 O
ATOM 6 C5' C A2078 108.102 108.612 32.907 1.00 62.01 C
ATOM 7 C4' C A2078 108.249 109.965 33.559 1.00 61.41 C
ATOM 8 O4' C A2078 107.938 109.875 34.970 1.00 60.20 O
ATOM 9 C3' C A2078 109.634 110.588 33.525 1.00 62.68 C
ATOM 10 O3' C A2078 109.833 111.209 32.265 1.00 64.49 O
ATOM 11 C2' C A2078 109.544 111.605 34.658 1.00 61.53 C
ATOM 12 O2' C A2078 108.848 112.779 34.287 1.00 63.20 O
ATOM 13 C1' C A2078 108.692 110.845 35.679 1.00 59.08 C
ATOM 14 N1 C A2078 109.458 110.170 36.743 1.00 57.02 N
ATOM 15 C2 C A2078 109.767 110.891 37.907 1.00 57.84 C
ATOM 16 O2 C A2078 109.407 112.087 37.996 1.00 59.87 O
ATOM 17 N3 C A2078 110.445 110.271 38.905 1.00 56.21 N
ATOM 18 C4 C A2078 110.806 108.992 38.774 1.00 54.40 C
ATOM 19 N4 C A2078 111.457 108.421 39.790 1.00 54.62 N
ATOM 20 C5 C A2078 110.515 108.243 37.598 1.00 52.98 C
ATOM 21 C6 C A2078 109.851 108.864 36.617 1.00 54.47 C
ATOM 22 P U A2079 111.293 111.249 31.583 1.00 66.72 P
ATOM 23 OP1 U A2079 111.911 112.546 31.963 1.00 66.28 O
ATOM 24 OP2 U A2079 111.123 110.905 30.136 1.00 63.98 O
ATOM 25 O5' U A2079 112.154 110.075 32.227 1.00 65.20 O
TER
ATOM 1 O3' A B2104 117.104 108.575 39.617 1.00 80.87 O
ATOM 2 P C B2105 116.376 107.553 40.636 1.00 80.89 P
ATOM 3 OP1 C B2105 117.179 106.298 40.735 1.00 80.54 O
ATOM 4 OP2 C B2105 114.945 107.467 40.236 1.00 79.50 O
ATOM 5 O5' C B2105 116.448 108.329 42.031 1.00 78.06 O
ATOM 6 C5' C B2105 117.291 107.859 43.105 1.00 74.27 C
ATOM 7 C4' C B2105 117.739 109.013 43.978 1.00 72.08 C
ATOM 8 O4' C B2105 118.539 109.935 43.193 1.00 70.56 O
ATOM 9 C3' C B2105 116.659 109.912 44.557 1.00 71.06 C
ATOM 10 O3' C B2105 116.018 109.361 45.697 1.00 71.37 O
ATOM 11 C2' C B2105 117.445 111.168 44.907 1.00 69.26 C
ATOM 12 O2' C B2105 118.174 111.065 46.114 1.00 69.64 O
ATOM 13 C1' C B2105 118.406 111.248 43.721 1.00 66.93 C
ATOM 14 N1 C B2105 117.898 112.138 42.666 1.00 63.39 N
ATOM 15 C2 C B2105 118.003 113.523 42.856 1.00 62.66 C
ATOM 16 O2 C B2105 118.530 113.949 43.900 1.00 62.38 O
ATOM 17 N3 C B2105 117.529 114.359 41.906 1.00 61.35 N
ATOM 18 C4 C B2105 116.973 113.862 40.799 1.00 61.32 C
ATOM 19 N4 C B2105 116.518 114.730 39.888 1.00 60.36 N
ATOM 20 C5 C B2105 116.858 112.457 40.575 1.00 60.77 C
ATOM 21 C6 C B2105 117.329 111.640 41.526 1.00 61.61 C
ATOM 22 P A B2106 114.466 109.681 45.956 1.00 70.97 P
ATOM 23 OP1 A B2106 114.092 109.073 47.259 1.00 71.48 O
ATOM 24 OP2 A B2106 113.717 109.293 44.724 1.00 69.87 O
ATOM 25 O5' A B2106 114.437 111.270 46.105 1.00 68.19 O
TER
Atoms:
C2: (109.767,110.891,37.907)
OP1: (108.807,105.915,31.704)
OP2: (109.923,105.389,33.965)
C4: (110.806,108.992,38.774)
O5': (109.043,107.677,33.462)
C3': (109.634,110.588,33.525)
C1': (108.692,110.845,35.679)
O4': (107.938,109.875,34.970)
C5': (108.102,108.612,32.907)
P: (108.894,106.117,33.176)
O2: (109.407,112.087,37.996)
C4': (108.249,109.965,33.559)
C2': (109.544,111.605,34.658)
O2': (108.848,112.779,34.287)
N1: (109.458,110.170,36.743)
N3: (110.445,110.271,38.905)
N4: (111.457,108.421,39.790)
C6: (109.851,108.864,36.617)
C5: (110.515,108.243,37.598)
O3': (109.833,111.209,32.265)
OP1: (108.807,105.915,31.704)
OP2: (109.923,105.389,33.965)
C4: (110.806,108.992,38.774)
O5': (109.043,107.677,33.462)
C3': (109.634,110.588,33.525)
C1': (108.692,110.845,35.679)
O4': (107.938,109.875,34.970)
C5': (108.102,108.612,32.907)
P: (108.894,106.117,33.176)
O2: (109.407,112.087,37.996)
C4': (108.249,109.965,33.559)
C2': (109.544,111.605,34.658)
O2': (108.848,112.779,34.287)
N1: (109.458,110.170,36.743)
N3: (110.445,110.271,38.905)
N4: (111.457,108.421,39.790)
C6: (109.851,108.864,36.617)
C5: (110.515,108.243,37.598)
O3': (109.833,111.209,32.265)
C2: (118.003,113.523,42.856)
OP1: (117.179,106.298,40.735)
OP2: (114.945,107.467,40.236)
C4: (116.973,113.862,40.799)
O5': (116.448,108.329,42.031)
C3': (116.659,109.912,44.557)
C1': (118.406,111.248,43.721)
O4': (118.539,109.935,43.193)
C5': (117.291,107.859,43.105)
P: (116.376,107.553,40.636)
O2: (118.530,113.949,43.900)
C4': (117.739,109.013,43.978)
C2': (117.445,111.168,44.907)
O2': (118.174,111.065,46.114)
N1: (117.898,112.138,42.666)
N3: (117.529,114.359,41.906)
N4: (116.518,114.730,39.888)
C6: (117.329,111.640,41.526)
C5: (116.858,112.457,40.575)
O3': (116.018,109.361,45.697)
OP1: (117.179,106.298,40.735)
OP2: (114.945,107.467,40.236)
C4: (116.973,113.862,40.799)
O5': (116.448,108.329,42.031)
C3': (116.659,109.912,44.557)
C1': (118.406,111.248,43.721)
O4': (118.539,109.935,43.193)
C5': (117.291,107.859,43.105)
P: (116.376,107.553,40.636)
O2: (118.530,113.949,43.900)
C4': (117.739,109.013,43.978)
C2': (117.445,111.168,44.907)
O2': (118.174,111.065,46.114)
N1: (117.898,112.138,42.666)
N3: (117.529,114.359,41.906)
N4: (116.518,114.730,39.888)
C6: (117.329,111.640,41.526)
C5: (116.858,112.457,40.575)
O3': (116.018,109.361,45.697)
Image (generated by PyMOL):