Doublet info:
Details
Nucleotide types:
CC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJN:02078:02105
Extra
PDB:
ATOM 1 O3' G A2077 107.051 105.471 33.435 1.00 56.13 O
ATOM 2 P C A2078 108.465 105.925 32.809 1.00 57.13 P
ATOM 3 OP1 C A2078 108.314 105.829 31.334 1.00 56.54 O
ATOM 4 OP2 C A2078 109.534 105.152 33.494 1.00 55.70 O
ATOM 5 O5' C A2078 108.596 107.467 33.199 1.00 56.29 O
ATOM 6 C5' C A2078 107.693 108.440 32.627 1.00 56.44 C
ATOM 7 C4' C A2078 107.882 109.797 33.264 1.00 55.32 C
ATOM 8 O4' C A2078 107.608 109.726 34.684 1.00 55.08 O
ATOM 9 C3' C A2078 109.273 110.396 33.190 1.00 55.62 C
ATOM 10 O3' C A2078 109.463 110.994 31.918 1.00 57.81 O
ATOM 11 C2' C A2078 109.238 111.421 34.318 1.00 54.48 C
ATOM 12 O2' C A2078 108.552 112.603 33.963 1.00 53.61 O
ATOM 13 C1' C A2078 108.403 110.681 35.366 1.00 53.95 C
ATOM 14 N1 C A2078 109.178 109.989 36.413 1.00 53.91 N
ATOM 15 C2 C A2078 109.520 110.697 37.582 1.00 54.65 C
ATOM 16 O2 C A2078 109.194 111.900 37.685 1.00 56.14 O
ATOM 17 N3 C A2078 110.194 110.057 38.566 1.00 54.20 N
ATOM 18 C4 C A2078 110.534 108.775 38.418 1.00 53.57 C
ATOM 19 N4 C A2078 111.188 108.186 39.423 1.00 54.24 N
ATOM 20 C5 C A2078 110.218 108.039 37.236 1.00 52.27 C
ATOM 21 C6 C A2078 109.547 108.677 36.270 1.00 52.32 C
ATOM 22 P U A2079 110.938 111.113 31.291 1.00 59.34 P
ATOM 23 OP1 U A2079 111.630 112.245 31.958 1.00 59.10 O
ATOM 24 OP2 U A2079 110.802 111.098 29.806 1.00 57.80 O
ATOM 25 O5' U A2079 111.687 109.782 31.718 1.00 58.19 O
TER
ATOM 1 O3' A B2104 116.705 108.190 39.137 1.00 69.15 O
ATOM 2 P C B2105 115.994 107.122 40.113 1.00 69.17 P
ATOM 3 OP1 C B2105 116.834 105.889 40.184 1.00 69.49 O
ATOM 4 OP2 C B2105 114.577 107.006 39.684 1.00 68.39 O
ATOM 5 O5' C B2105 116.024 107.864 41.528 1.00 66.88 O
ATOM 6 C5' C B2105 116.956 107.469 42.555 1.00 64.55 C
ATOM 7 C4' C B2105 117.473 108.674 43.313 1.00 62.27 C
ATOM 8 O4' C B2105 118.147 109.578 42.402 1.00 60.43 O
ATOM 9 C3' C B2105 116.455 109.587 43.971 1.00 62.00 C
ATOM 10 O3' C B2105 115.949 109.072 45.189 1.00 61.80 O
ATOM 11 C2' C B2105 117.277 110.845 44.215 1.00 61.00 C
ATOM 12 O2' C B2105 118.127 110.758 45.341 1.00 60.87 O
ATOM 13 C1' C B2105 118.128 110.889 42.948 1.00 59.59 C
ATOM 14 N1 C B2105 117.591 111.827 41.949 1.00 58.11 N
ATOM 15 C2 C B2105 117.655 113.209 42.222 1.00 57.62 C
ATOM 16 O2 C B2105 118.144 113.592 43.302 1.00 55.11 O
ATOM 17 N3 C B2105 117.179 114.084 41.306 1.00 58.18 N
ATOM 18 C4 C B2105 116.649 113.632 40.162 1.00 59.57 C
ATOM 19 N4 C B2105 116.187 114.531 39.291 1.00 59.51 N
ATOM 20 C5 C B2105 116.567 112.236 39.864 1.00 58.61 C
ATOM 21 C6 C B2105 117.044 111.379 40.777 1.00 58.23 C
ATOM 22 P A B2106 114.454 109.441 45.633 1.00 61.75 P
ATOM 23 OP1 A B2106 114.268 108.930 47.015 1.00 63.74 O
ATOM 24 OP2 A B2106 113.537 108.995 44.553 1.00 61.27 O
ATOM 25 O5' A B2106 114.449 111.030 45.698 1.00 58.38 O
TER
ATOM 2 P C A2078 108.465 105.925 32.809 1.00 57.13 P
ATOM 3 OP1 C A2078 108.314 105.829 31.334 1.00 56.54 O
ATOM 4 OP2 C A2078 109.534 105.152 33.494 1.00 55.70 O
ATOM 5 O5' C A2078 108.596 107.467 33.199 1.00 56.29 O
ATOM 6 C5' C A2078 107.693 108.440 32.627 1.00 56.44 C
ATOM 7 C4' C A2078 107.882 109.797 33.264 1.00 55.32 C
ATOM 8 O4' C A2078 107.608 109.726 34.684 1.00 55.08 O
ATOM 9 C3' C A2078 109.273 110.396 33.190 1.00 55.62 C
ATOM 10 O3' C A2078 109.463 110.994 31.918 1.00 57.81 O
ATOM 11 C2' C A2078 109.238 111.421 34.318 1.00 54.48 C
ATOM 12 O2' C A2078 108.552 112.603 33.963 1.00 53.61 O
ATOM 13 C1' C A2078 108.403 110.681 35.366 1.00 53.95 C
ATOM 14 N1 C A2078 109.178 109.989 36.413 1.00 53.91 N
ATOM 15 C2 C A2078 109.520 110.697 37.582 1.00 54.65 C
ATOM 16 O2 C A2078 109.194 111.900 37.685 1.00 56.14 O
ATOM 17 N3 C A2078 110.194 110.057 38.566 1.00 54.20 N
ATOM 18 C4 C A2078 110.534 108.775 38.418 1.00 53.57 C
ATOM 19 N4 C A2078 111.188 108.186 39.423 1.00 54.24 N
ATOM 20 C5 C A2078 110.218 108.039 37.236 1.00 52.27 C
ATOM 21 C6 C A2078 109.547 108.677 36.270 1.00 52.32 C
ATOM 22 P U A2079 110.938 111.113 31.291 1.00 59.34 P
ATOM 23 OP1 U A2079 111.630 112.245 31.958 1.00 59.10 O
ATOM 24 OP2 U A2079 110.802 111.098 29.806 1.00 57.80 O
ATOM 25 O5' U A2079 111.687 109.782 31.718 1.00 58.19 O
TER
ATOM 1 O3' A B2104 116.705 108.190 39.137 1.00 69.15 O
ATOM 2 P C B2105 115.994 107.122 40.113 1.00 69.17 P
ATOM 3 OP1 C B2105 116.834 105.889 40.184 1.00 69.49 O
ATOM 4 OP2 C B2105 114.577 107.006 39.684 1.00 68.39 O
ATOM 5 O5' C B2105 116.024 107.864 41.528 1.00 66.88 O
ATOM 6 C5' C B2105 116.956 107.469 42.555 1.00 64.55 C
ATOM 7 C4' C B2105 117.473 108.674 43.313 1.00 62.27 C
ATOM 8 O4' C B2105 118.147 109.578 42.402 1.00 60.43 O
ATOM 9 C3' C B2105 116.455 109.587 43.971 1.00 62.00 C
ATOM 10 O3' C B2105 115.949 109.072 45.189 1.00 61.80 O
ATOM 11 C2' C B2105 117.277 110.845 44.215 1.00 61.00 C
ATOM 12 O2' C B2105 118.127 110.758 45.341 1.00 60.87 O
ATOM 13 C1' C B2105 118.128 110.889 42.948 1.00 59.59 C
ATOM 14 N1 C B2105 117.591 111.827 41.949 1.00 58.11 N
ATOM 15 C2 C B2105 117.655 113.209 42.222 1.00 57.62 C
ATOM 16 O2 C B2105 118.144 113.592 43.302 1.00 55.11 O
ATOM 17 N3 C B2105 117.179 114.084 41.306 1.00 58.18 N
ATOM 18 C4 C B2105 116.649 113.632 40.162 1.00 59.57 C
ATOM 19 N4 C B2105 116.187 114.531 39.291 1.00 59.51 N
ATOM 20 C5 C B2105 116.567 112.236 39.864 1.00 58.61 C
ATOM 21 C6 C B2105 117.044 111.379 40.777 1.00 58.23 C
ATOM 22 P A B2106 114.454 109.441 45.633 1.00 61.75 P
ATOM 23 OP1 A B2106 114.268 108.930 47.015 1.00 63.74 O
ATOM 24 OP2 A B2106 113.537 108.995 44.553 1.00 61.27 O
ATOM 25 O5' A B2106 114.449 111.030 45.698 1.00 58.38 O
TER
Atoms:
C2: (109.520,110.697,37.582)
OP1: (108.314,105.829,31.334)
OP2: (109.534,105.152,33.494)
C4: (110.534,108.775,38.418)
O5': (108.596,107.467,33.199)
C3': (109.273,110.396,33.190)
C1': (108.403,110.681,35.366)
O4': (107.608,109.726,34.684)
C5': (107.693,108.440,32.627)
P: (108.465,105.925,32.809)
O2: (109.194,111.900,37.685)
C4': (107.882,109.797,33.264)
C2': (109.238,111.421,34.318)
O2': (108.552,112.603,33.963)
N1: (109.178,109.989,36.413)
N3: (110.194,110.057,38.566)
N4: (111.188,108.186,39.423)
C6: (109.547,108.677,36.270)
C5: (110.218,108.039,37.236)
O3': (109.463,110.994,31.918)
OP1: (108.314,105.829,31.334)
OP2: (109.534,105.152,33.494)
C4: (110.534,108.775,38.418)
O5': (108.596,107.467,33.199)
C3': (109.273,110.396,33.190)
C1': (108.403,110.681,35.366)
O4': (107.608,109.726,34.684)
C5': (107.693,108.440,32.627)
P: (108.465,105.925,32.809)
O2: (109.194,111.900,37.685)
C4': (107.882,109.797,33.264)
C2': (109.238,111.421,34.318)
O2': (108.552,112.603,33.963)
N1: (109.178,109.989,36.413)
N3: (110.194,110.057,38.566)
N4: (111.188,108.186,39.423)
C6: (109.547,108.677,36.270)
C5: (110.218,108.039,37.236)
O3': (109.463,110.994,31.918)
C2: (117.655,113.209,42.222)
OP1: (116.834,105.889,40.184)
OP2: (114.577,107.006,39.684)
C4: (116.649,113.632,40.162)
O5': (116.024,107.864,41.528)
C3': (116.455,109.587,43.971)
C1': (118.128,110.889,42.948)
O4': (118.147,109.578,42.402)
C5': (116.956,107.469,42.555)
P: (115.994,107.122,40.113)
O2: (118.144,113.592,43.302)
C4': (117.473,108.674,43.313)
C2': (117.277,110.845,44.215)
O2': (118.127,110.758,45.341)
N1: (117.591,111.827,41.949)
N3: (117.179,114.084,41.306)
N4: (116.187,114.531,39.291)
C6: (117.044,111.379,40.777)
C5: (116.567,112.236,39.864)
O3': (115.949,109.072,45.189)
OP1: (116.834,105.889,40.184)
OP2: (114.577,107.006,39.684)
C4: (116.649,113.632,40.162)
O5': (116.024,107.864,41.528)
C3': (116.455,109.587,43.971)
C1': (118.128,110.889,42.948)
O4': (118.147,109.578,42.402)
C5': (116.956,107.469,42.555)
P: (115.994,107.122,40.113)
O2: (118.144,113.592,43.302)
C4': (117.473,108.674,43.313)
C2': (117.277,110.845,44.215)
O2': (118.127,110.758,45.341)
N1: (117.591,111.827,41.949)
N3: (117.179,114.084,41.306)
N4: (116.187,114.531,39.291)
C6: (117.044,111.379,40.777)
C5: (116.567,112.236,39.864)
O3': (115.949,109.072,45.189)
Image (generated by PyMOL):