Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12622:12571
Extra
PDB:
ATOM 1 O3' U A2621 38.332 0.591 61.307 1.00 38.54 O
ATOM 2 P C A2622 38.781 -0.504 62.381 1.00 55.35 P
ATOM 3 OP1 C A2622 39.761 0.129 63.267 1.00 55.35 O
ATOM 4 OP2 C A2622 39.197 -1.713 61.627 1.00 55.30 O
ATOM 5 O5' C A2622 37.446 -0.800 63.171 1.00 55.36 O
ATOM 6 C5' C A2622 37.040 0.006 64.249 1.00 55.40 C
ATOM 7 C4' C A2622 35.979 -0.684 65.081 1.00 55.39 C
ATOM 8 O4' C A2622 35.056 -1.425 64.237 1.00 55.39 O
ATOM 9 C3' C A2622 36.467 -1.720 66.088 1.00 55.32 C
ATOM 10 O3' C A2622 36.991 -1.123 67.314 1.00 55.34 O
ATOM 11 C2' C A2622 35.224 -2.638 66.283 1.00 55.32 C
ATOM 12 O2' C A2622 34.495 -2.296 67.452 1.00 55.37 O
ATOM 13 C1' C A2622 34.353 -2.322 65.054 1.00 55.37 C
ATOM 14 N1 C A2622 33.918 -3.529 64.289 1.00 55.35 N
ATOM 15 C2 C A2622 32.546 -3.525 64.134 1.00 55.42 C
ATOM 16 O2 C A2622 31.939 -2.554 64.579 1.00 55.48 O
ATOM 17 N3 C A2622 31.918 -4.534 63.485 1.00 55.43 N
ATOM 18 C4 C A2622 32.596 -5.567 63.041 1.00 55.37 C
ATOM 19 N4 C A2622 31.821 -6.440 62.448 1.00 55.41 N
ATOM 20 C5 C A2622 34.011 -5.690 63.169 1.00 55.30 C
ATOM 21 C6 C A2622 34.605 -4.639 63.800 1.00 55.30 C
ATOM 22 P G A2623 38.471 -1.542 67.928 1.00 87.03 P
ATOM 23 OP1 G A2623 39.441 -1.584 66.798 1.00 87.00 O
ATOM 24 OP2 G A2623 38.278 -2.782 68.777 1.00 87.00 O
ATOM 25 O5' G A2623 38.816 -0.320 68.879 1.00 87.11 O
TER
ATOM 1 O3' U B2570 30.244 -9.431 58.715 1.00 39.88 O
ATOM 2 P A B2571 29.909 -8.468 57.430 1.00 45.42 P
ATOM 3 OP1 A B2571 29.992 -9.310 56.219 1.00 45.49 O
ATOM 4 OP2 A B2571 30.771 -7.270 57.498 1.00 45.37 O
ATOM 5 O5' A B2571 28.360 -8.047 57.719 1.00 45.51 O
ATOM 6 C5' A B2571 27.320 -9.040 57.790 1.00 45.57 C
ATOM 7 C4' A B2571 26.125 -8.629 58.655 1.00 45.62 C
ATOM 8 O4' A B2571 26.438 -8.722 60.055 1.00 45.52 O
ATOM 9 C3' A B2571 25.603 -7.223 58.508 1.00 45.68 C
ATOM 10 O3' A B2571 24.798 -7.052 57.370 1.00 45.82 O
ATOM 11 C2' A B2571 24.845 -7.000 59.814 1.00 45.68 C
ATOM 12 O2' A B2571 23.562 -7.622 59.781 1.00 45.79 O
ATOM 13 C1' A B2571 25.712 -7.752 60.791 1.00 45.55 C
ATOM 14 N9 A B2571 26.675 -6.851 61.466 1.00 45.46 N
ATOM 15 C8 A B2571 27.999 -6.897 61.228 1.00 45.37 C
ATOM 16 N7 A B2571 28.663 -6.056 61.940 1.00 45.32 N
ATOM 17 C5 A B2571 27.750 -5.383 62.708 1.00 45.38 C
ATOM 18 C6 A B2571 27.904 -4.345 63.665 1.00 45.37 C
ATOM 19 N6 A B2571 29.071 -3.788 64.007 1.00 45.30 N
ATOM 20 N1 A B2571 26.818 -3.884 64.290 1.00 45.45 N
ATOM 21 C2 A B2571 25.663 -4.461 63.924 1.00 45.53 C
ATOM 22 N3 A B2571 25.415 -5.439 63.052 1.00 45.54 N
ATOM 23 C4 A B2571 26.515 -5.877 62.444 1.00 45.46 C
ATOM 24 P A B2572 24.703 -5.620 56.709 1.00 52.83 P
ATOM 25 OP1 A B2572 23.753 -5.750 55.610 1.00 52.99 O
ATOM 26 OP2 A B2572 26.079 -5.173 56.401 1.00 52.74 O
ATOM 27 O5' A B2572 24.128 -4.714 57.889 1.00 52.83 O
TER
ATOM 2 P C A2622 38.781 -0.504 62.381 1.00 55.35 P
ATOM 3 OP1 C A2622 39.761 0.129 63.267 1.00 55.35 O
ATOM 4 OP2 C A2622 39.197 -1.713 61.627 1.00 55.30 O
ATOM 5 O5' C A2622 37.446 -0.800 63.171 1.00 55.36 O
ATOM 6 C5' C A2622 37.040 0.006 64.249 1.00 55.40 C
ATOM 7 C4' C A2622 35.979 -0.684 65.081 1.00 55.39 C
ATOM 8 O4' C A2622 35.056 -1.425 64.237 1.00 55.39 O
ATOM 9 C3' C A2622 36.467 -1.720 66.088 1.00 55.32 C
ATOM 10 O3' C A2622 36.991 -1.123 67.314 1.00 55.34 O
ATOM 11 C2' C A2622 35.224 -2.638 66.283 1.00 55.32 C
ATOM 12 O2' C A2622 34.495 -2.296 67.452 1.00 55.37 O
ATOM 13 C1' C A2622 34.353 -2.322 65.054 1.00 55.37 C
ATOM 14 N1 C A2622 33.918 -3.529 64.289 1.00 55.35 N
ATOM 15 C2 C A2622 32.546 -3.525 64.134 1.00 55.42 C
ATOM 16 O2 C A2622 31.939 -2.554 64.579 1.00 55.48 O
ATOM 17 N3 C A2622 31.918 -4.534 63.485 1.00 55.43 N
ATOM 18 C4 C A2622 32.596 -5.567 63.041 1.00 55.37 C
ATOM 19 N4 C A2622 31.821 -6.440 62.448 1.00 55.41 N
ATOM 20 C5 C A2622 34.011 -5.690 63.169 1.00 55.30 C
ATOM 21 C6 C A2622 34.605 -4.639 63.800 1.00 55.30 C
ATOM 22 P G A2623 38.471 -1.542 67.928 1.00 87.03 P
ATOM 23 OP1 G A2623 39.441 -1.584 66.798 1.00 87.00 O
ATOM 24 OP2 G A2623 38.278 -2.782 68.777 1.00 87.00 O
ATOM 25 O5' G A2623 38.816 -0.320 68.879 1.00 87.11 O
TER
ATOM 1 O3' U B2570 30.244 -9.431 58.715 1.00 39.88 O
ATOM 2 P A B2571 29.909 -8.468 57.430 1.00 45.42 P
ATOM 3 OP1 A B2571 29.992 -9.310 56.219 1.00 45.49 O
ATOM 4 OP2 A B2571 30.771 -7.270 57.498 1.00 45.37 O
ATOM 5 O5' A B2571 28.360 -8.047 57.719 1.00 45.51 O
ATOM 6 C5' A B2571 27.320 -9.040 57.790 1.00 45.57 C
ATOM 7 C4' A B2571 26.125 -8.629 58.655 1.00 45.62 C
ATOM 8 O4' A B2571 26.438 -8.722 60.055 1.00 45.52 O
ATOM 9 C3' A B2571 25.603 -7.223 58.508 1.00 45.68 C
ATOM 10 O3' A B2571 24.798 -7.052 57.370 1.00 45.82 O
ATOM 11 C2' A B2571 24.845 -7.000 59.814 1.00 45.68 C
ATOM 12 O2' A B2571 23.562 -7.622 59.781 1.00 45.79 O
ATOM 13 C1' A B2571 25.712 -7.752 60.791 1.00 45.55 C
ATOM 14 N9 A B2571 26.675 -6.851 61.466 1.00 45.46 N
ATOM 15 C8 A B2571 27.999 -6.897 61.228 1.00 45.37 C
ATOM 16 N7 A B2571 28.663 -6.056 61.940 1.00 45.32 N
ATOM 17 C5 A B2571 27.750 -5.383 62.708 1.00 45.38 C
ATOM 18 C6 A B2571 27.904 -4.345 63.665 1.00 45.37 C
ATOM 19 N6 A B2571 29.071 -3.788 64.007 1.00 45.30 N
ATOM 20 N1 A B2571 26.818 -3.884 64.290 1.00 45.45 N
ATOM 21 C2 A B2571 25.663 -4.461 63.924 1.00 45.53 C
ATOM 22 N3 A B2571 25.415 -5.439 63.052 1.00 45.54 N
ATOM 23 C4 A B2571 26.515 -5.877 62.444 1.00 45.46 C
ATOM 24 P A B2572 24.703 -5.620 56.709 1.00 52.83 P
ATOM 25 OP1 A B2572 23.753 -5.750 55.610 1.00 52.99 O
ATOM 26 OP2 A B2572 26.079 -5.173 56.401 1.00 52.74 O
ATOM 27 O5' A B2572 24.128 -4.714 57.889 1.00 52.83 O
TER
Atoms:
C2: (32.546,-3.525,64.134)
OP1: (39.761,0.129,63.267)
OP2: (39.197,-1.713,61.627)
C4: (32.596,-5.567,63.041)
O5': (37.446,-0.800,63.171)
C3': (36.467,-1.720,66.088)
C1': (34.353,-2.322,65.054)
O4': (35.056,-1.425,64.237)
C5': (37.040,0.006,64.249)
P: (38.781,-0.504,62.381)
O2: (31.939,-2.554,64.579)
C4': (35.979,-0.684,65.081)
C2': (35.224,-2.638,66.283)
O2': (34.495,-2.296,67.452)
N1: (33.918,-3.529,64.289)
N3: (31.918,-4.534,63.485)
N4: (31.821,-6.440,62.448)
C6: (34.605,-4.639,63.800)
C5: (34.011,-5.690,63.169)
O3': (36.991,-1.123,67.314)
OP1: (39.761,0.129,63.267)
OP2: (39.197,-1.713,61.627)
C4: (32.596,-5.567,63.041)
O5': (37.446,-0.800,63.171)
C3': (36.467,-1.720,66.088)
C1': (34.353,-2.322,65.054)
O4': (35.056,-1.425,64.237)
C5': (37.040,0.006,64.249)
P: (38.781,-0.504,62.381)
O2: (31.939,-2.554,64.579)
C4': (35.979,-0.684,65.081)
C2': (35.224,-2.638,66.283)
O2': (34.495,-2.296,67.452)
N1: (33.918,-3.529,64.289)
N3: (31.918,-4.534,63.485)
N4: (31.821,-6.440,62.448)
C6: (34.605,-4.639,63.800)
C5: (34.011,-5.690,63.169)
O3': (36.991,-1.123,67.314)
OP1: (29.992,-9.310,56.219)
OP2: (30.771,-7.270,57.498)
C3': (25.603,-7.223,58.508)
C1': (25.712,-7.752,60.791)
C5': (27.320,-9.040,57.790)
O4': (26.438,-8.722,60.055)
C8: (27.999,-6.897,61.228)
O2': (23.562,-7.622,59.781)
C6: (27.904,-4.345,63.665)
C5: (27.750,-5.383,62.708)
C4: (26.515,-5.877,62.444)
P: (29.909,-8.468,57.430)
C4': (26.125,-8.629,58.655)
C2': (24.845,-7.000,59.814)
C2: (25.663,-4.461,63.924)
N1: (26.818,-3.884,64.290)
N3: (25.415,-5.439,63.052)
N6: (29.071,-3.788,64.007)
N7: (28.663,-6.056,61.940)
N9: (26.675,-6.851,61.466)
O5': (28.360,-8.047,57.719)
O3': (24.798,-7.052,57.370)
OP2: (30.771,-7.270,57.498)
C3': (25.603,-7.223,58.508)
C1': (25.712,-7.752,60.791)
C5': (27.320,-9.040,57.790)
O4': (26.438,-8.722,60.055)
C8: (27.999,-6.897,61.228)
O2': (23.562,-7.622,59.781)
C6: (27.904,-4.345,63.665)
C5: (27.750,-5.383,62.708)
C4: (26.515,-5.877,62.444)
P: (29.909,-8.468,57.430)
C4': (26.125,-8.629,58.655)
C2': (24.845,-7.000,59.814)
C2: (25.663,-4.461,63.924)
N1: (26.818,-3.884,64.290)
N3: (25.415,-5.439,63.052)
N6: (29.071,-3.788,64.007)
N7: (28.663,-6.056,61.940)
N9: (26.675,-6.851,61.466)
O5': (28.360,-8.047,57.719)
O3': (24.798,-7.052,57.370)
Image (generated by PyMOL):