Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD5:B5:A4
Extra
PDB:
ATOM 1 O3' A A 4 -13.103 7.220 35.941 1.00 33.51 O
ATOM 2 P C A 5 -14.234 8.313 36.268 1.00 35.56 P
ATOM 3 OP1 C A 5 -14.653 8.216 37.700 1.00 41.39 O
ATOM 4 OP2 C A 5 -15.346 8.284 35.290 1.00 33.25 O
ATOM 5 O5' C A 5 -13.479 9.730 36.076 1.00 33.96 O
ATOM 6 C5' C A 5 -12.174 9.974 36.631 1.00 31.90 C
ATOM 7 C4' C A 5 -11.368 10.988 35.858 1.00 31.93 C
ATOM 8 O4' C A 5 -11.103 10.434 34.537 1.00 30.12 O
ATOM 9 C3' C A 5 -12.057 12.320 35.562 1.00 32.65 C
ATOM 10 O3' C A 5 -11.891 13.234 36.649 1.00 35.11 O
ATOM 11 C2' C A 5 -11.274 12.811 34.342 1.00 29.06 C
ATOM 12 O2' C A 5 -10.028 13.356 34.748 1.00 29.86 O
ATOM 13 C1' C A 5 -11.059 11.494 33.592 1.00 27.22 C
ATOM 14 N1 C A 5 -12.027 11.164 32.537 1.00 27.40 N
ATOM 15 C2 C A 5 -11.885 11.812 31.303 1.00 27.58 C
ATOM 16 O2 C A 5 -10.971 12.670 31.169 1.00 25.25 O
ATOM 17 N3 C A 5 -12.767 11.525 30.316 1.00 24.33 N
ATOM 18 C4 C A 5 -13.748 10.635 30.544 1.00 25.85 C
ATOM 19 N4 C A 5 -14.524 10.310 29.495 1.00 24.84 N
ATOM 20 C5 C A 5 -13.942 9.981 31.809 1.00 26.82 C
ATOM 21 C6 C A 5 -13.065 10.283 32.788 1.00 25.31 C
ATOM 22 P A A 6 -12.857 14.502 36.812 1.00 37.56 P
ATOM 23 OP1 A A 6 -12.492 15.188 38.083 1.00 43.74 O
ATOM 24 OP2 A A 6 -14.282 14.161 36.524 1.00 44.66 O
ATOM 25 O5' A A 6 -12.451 15.478 35.586 1.00 37.32 O
TER
ATOM 1 O3' C B 3 -20.229 9.125 24.493 1.00 26.49 O
ATOM 2 P A B 4 -19.304 7.865 24.116 1.00 33.10 P
ATOM 3 OP1 A B 4 -19.199 7.759 22.623 1.00 37.91 O
ATOM 4 OP2 A B 4 -19.732 6.690 24.894 1.00 40.26 O
ATOM 5 O5' A B 4 -17.857 8.387 24.605 1.00 32.54 O
ATOM 6 C5' A B 4 -16.802 8.535 23.639 1.00 31.36 C
ATOM 7 C4' A B 4 -16.917 9.777 22.793 1.00 30.84 C
ATOM 8 O4' A B 4 -17.207 10.891 23.708 1.00 28.10 O
ATOM 9 C3' A B 4 -15.584 10.158 22.117 1.00 31.48 C
ATOM 10 O3' A B 4 -15.455 9.649 20.782 1.00 31.92 O
ATOM 11 C2' A B 4 -15.615 11.677 22.189 1.00 29.40 C
ATOM 12 O2' A B 4 -16.491 12.248 21.219 1.00 34.83 O
ATOM 13 C1' A B 4 -16.260 11.908 23.558 1.00 30.81 C
ATOM 14 N9 A B 4 -15.347 12.033 24.686 1.00 27.07 N
ATOM 15 C8 A B 4 -15.335 11.235 25.809 1.00 24.47 C
ATOM 16 N7 A B 4 -14.395 11.587 26.674 1.00 24.60 N
ATOM 17 C5 A B 4 -13.768 12.692 26.102 1.00 23.96 C
ATOM 18 C6 A B 4 -12.698 13.475 26.565 1.00 22.55 C
ATOM 19 N6 A B 4 -12.064 13.286 27.746 1.00 21.36 N
ATOM 20 N1 A B 4 -12.275 14.508 25.787 1.00 23.75 N
ATOM 21 C2 A B 4 -12.926 14.680 24.616 1.00 24.82 C
ATOM 22 N3 A B 4 -13.934 13.993 24.079 1.00 25.69 N
ATOM 23 C4 A B 4 -14.340 12.979 24.879 1.00 25.96 C
ATOM 24 P C B 5 -14.367 8.515 20.480 1.00 35.67 P
ATOM 25 OP1 C B 5 -14.424 8.085 19.050 1.00 44.00 O
ATOM 26 OP2 C B 5 -14.421 7.398 21.464 1.00 33.81 O
ATOM 27 O5' C B 5 -12.948 9.245 20.695 1.00 34.02 O
TER
ATOM 2 P C A 5 -14.234 8.313 36.268 1.00 35.56 P
ATOM 3 OP1 C A 5 -14.653 8.216 37.700 1.00 41.39 O
ATOM 4 OP2 C A 5 -15.346 8.284 35.290 1.00 33.25 O
ATOM 5 O5' C A 5 -13.479 9.730 36.076 1.00 33.96 O
ATOM 6 C5' C A 5 -12.174 9.974 36.631 1.00 31.90 C
ATOM 7 C4' C A 5 -11.368 10.988 35.858 1.00 31.93 C
ATOM 8 O4' C A 5 -11.103 10.434 34.537 1.00 30.12 O
ATOM 9 C3' C A 5 -12.057 12.320 35.562 1.00 32.65 C
ATOM 10 O3' C A 5 -11.891 13.234 36.649 1.00 35.11 O
ATOM 11 C2' C A 5 -11.274 12.811 34.342 1.00 29.06 C
ATOM 12 O2' C A 5 -10.028 13.356 34.748 1.00 29.86 O
ATOM 13 C1' C A 5 -11.059 11.494 33.592 1.00 27.22 C
ATOM 14 N1 C A 5 -12.027 11.164 32.537 1.00 27.40 N
ATOM 15 C2 C A 5 -11.885 11.812 31.303 1.00 27.58 C
ATOM 16 O2 C A 5 -10.971 12.670 31.169 1.00 25.25 O
ATOM 17 N3 C A 5 -12.767 11.525 30.316 1.00 24.33 N
ATOM 18 C4 C A 5 -13.748 10.635 30.544 1.00 25.85 C
ATOM 19 N4 C A 5 -14.524 10.310 29.495 1.00 24.84 N
ATOM 20 C5 C A 5 -13.942 9.981 31.809 1.00 26.82 C
ATOM 21 C6 C A 5 -13.065 10.283 32.788 1.00 25.31 C
ATOM 22 P A A 6 -12.857 14.502 36.812 1.00 37.56 P
ATOM 23 OP1 A A 6 -12.492 15.188 38.083 1.00 43.74 O
ATOM 24 OP2 A A 6 -14.282 14.161 36.524 1.00 44.66 O
ATOM 25 O5' A A 6 -12.451 15.478 35.586 1.00 37.32 O
TER
ATOM 1 O3' C B 3 -20.229 9.125 24.493 1.00 26.49 O
ATOM 2 P A B 4 -19.304 7.865 24.116 1.00 33.10 P
ATOM 3 OP1 A B 4 -19.199 7.759 22.623 1.00 37.91 O
ATOM 4 OP2 A B 4 -19.732 6.690 24.894 1.00 40.26 O
ATOM 5 O5' A B 4 -17.857 8.387 24.605 1.00 32.54 O
ATOM 6 C5' A B 4 -16.802 8.535 23.639 1.00 31.36 C
ATOM 7 C4' A B 4 -16.917 9.777 22.793 1.00 30.84 C
ATOM 8 O4' A B 4 -17.207 10.891 23.708 1.00 28.10 O
ATOM 9 C3' A B 4 -15.584 10.158 22.117 1.00 31.48 C
ATOM 10 O3' A B 4 -15.455 9.649 20.782 1.00 31.92 O
ATOM 11 C2' A B 4 -15.615 11.677 22.189 1.00 29.40 C
ATOM 12 O2' A B 4 -16.491 12.248 21.219 1.00 34.83 O
ATOM 13 C1' A B 4 -16.260 11.908 23.558 1.00 30.81 C
ATOM 14 N9 A B 4 -15.347 12.033 24.686 1.00 27.07 N
ATOM 15 C8 A B 4 -15.335 11.235 25.809 1.00 24.47 C
ATOM 16 N7 A B 4 -14.395 11.587 26.674 1.00 24.60 N
ATOM 17 C5 A B 4 -13.768 12.692 26.102 1.00 23.96 C
ATOM 18 C6 A B 4 -12.698 13.475 26.565 1.00 22.55 C
ATOM 19 N6 A B 4 -12.064 13.286 27.746 1.00 21.36 N
ATOM 20 N1 A B 4 -12.275 14.508 25.787 1.00 23.75 N
ATOM 21 C2 A B 4 -12.926 14.680 24.616 1.00 24.82 C
ATOM 22 N3 A B 4 -13.934 13.993 24.079 1.00 25.69 N
ATOM 23 C4 A B 4 -14.340 12.979 24.879 1.00 25.96 C
ATOM 24 P C B 5 -14.367 8.515 20.480 1.00 35.67 P
ATOM 25 OP1 C B 5 -14.424 8.085 19.050 1.00 44.00 O
ATOM 26 OP2 C B 5 -14.421 7.398 21.464 1.00 33.81 O
ATOM 27 O5' C B 5 -12.948 9.245 20.695 1.00 34.02 O
TER
Atoms:
C2: (-11.885,11.812,31.303)
OP1: (-14.653,8.216,37.700)
OP2: (-15.346,8.284,35.290)
C4: (-13.748,10.635,30.544)
O5': (-13.479,9.730,36.076)
C3': (-12.057,12.320,35.562)
C1': (-11.059,11.494,33.592)
O4': (-11.103,10.434,34.537)
C5': (-12.174,9.974,36.631)
P: (-14.234,8.313,36.268)
O2: (-10.971,12.670,31.169)
C4': (-11.368,10.988,35.858)
C2': (-11.274,12.811,34.342)
O2': (-10.028,13.356,34.748)
N1: (-12.027,11.164,32.537)
N3: (-12.767,11.525,30.316)
N4: (-14.524,10.310,29.495)
C6: (-13.065,10.283,32.788)
C5: (-13.942,9.981,31.809)
O3': (-11.891,13.234,36.649)
OP1: (-14.653,8.216,37.700)
OP2: (-15.346,8.284,35.290)
C4: (-13.748,10.635,30.544)
O5': (-13.479,9.730,36.076)
C3': (-12.057,12.320,35.562)
C1': (-11.059,11.494,33.592)
O4': (-11.103,10.434,34.537)
C5': (-12.174,9.974,36.631)
P: (-14.234,8.313,36.268)
O2: (-10.971,12.670,31.169)
C4': (-11.368,10.988,35.858)
C2': (-11.274,12.811,34.342)
O2': (-10.028,13.356,34.748)
N1: (-12.027,11.164,32.537)
N3: (-12.767,11.525,30.316)
N4: (-14.524,10.310,29.495)
C6: (-13.065,10.283,32.788)
C5: (-13.942,9.981,31.809)
O3': (-11.891,13.234,36.649)
OP1: (-19.199,7.759,22.623)
OP2: (-19.732,6.690,24.894)
C3': (-15.584,10.158,22.117)
C1': (-16.260,11.908,23.558)
C5': (-16.802,8.535,23.639)
O4': (-17.207,10.891,23.708)
C8: (-15.335,11.235,25.809)
O2': (-16.491,12.248,21.219)
C6: (-12.698,13.475,26.565)
C5: (-13.768,12.692,26.102)
C4: (-14.340,12.979,24.879)
P: (-19.304,7.865,24.116)
C4': (-16.917,9.777,22.793)
C2': (-15.615,11.677,22.189)
C2: (-12.926,14.680,24.616)
N1: (-12.275,14.508,25.787)
N3: (-13.934,13.993,24.079)
N6: (-12.064,13.286,27.746)
N7: (-14.395,11.587,26.674)
N9: (-15.347,12.033,24.686)
O5': (-17.857,8.387,24.605)
O3': (-15.455,9.649,20.782)
OP2: (-19.732,6.690,24.894)
C3': (-15.584,10.158,22.117)
C1': (-16.260,11.908,23.558)
C5': (-16.802,8.535,23.639)
O4': (-17.207,10.891,23.708)
C8: (-15.335,11.235,25.809)
O2': (-16.491,12.248,21.219)
C6: (-12.698,13.475,26.565)
C5: (-13.768,12.692,26.102)
C4: (-14.340,12.979,24.879)
P: (-19.304,7.865,24.116)
C4': (-16.917,9.777,22.793)
C2': (-15.615,11.677,22.189)
C2: (-12.926,14.680,24.616)
N1: (-12.275,14.508,25.787)
N3: (-13.934,13.993,24.079)
N6: (-12.064,13.286,27.746)
N7: (-14.395,11.587,26.674)
N9: (-15.347,12.033,24.686)
O5': (-17.857,8.387,24.605)
O3': (-15.455,9.649,20.782)
Image (generated by PyMOL):