Doublet info:
Details
Nucleotide types:
UC
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YIJ:0988:01232
Extra
PDB:
ATOM 1 O3' U A 987 19.249 72.677 71.504 1.00 58.50 O
ATOM 2 P U A 988 17.720 73.137 71.326 1.00 60.40 P
ATOM 3 OP1 U A 988 17.185 73.651 72.616 1.00 58.99 O
ATOM 4 OP2 U A 988 17.028 72.028 70.635 1.00 63.44 O
ATOM 5 O5' U A 988 17.811 74.356 70.309 1.00 60.77 O
ATOM 6 C5' U A 988 18.329 75.615 70.746 1.00 59.63 C
ATOM 7 C4' U A 988 17.785 76.740 69.900 1.00 58.75 C
ATOM 8 O4' U A 988 16.472 76.404 69.364 1.00 58.71 O
ATOM 9 C3' U A 988 17.601 78.024 70.697 1.00 58.26 C
ATOM 10 O3' U A 988 17.821 79.155 69.866 1.00 55.86 O
ATOM 11 C2' U A 988 16.133 77.933 71.098 1.00 59.27 C
ATOM 12 O2' U A 988 15.564 79.171 71.462 1.00 59.93 O
ATOM 13 C1' U A 988 15.520 77.346 69.825 1.00 60.09 C
ATOM 14 N1 U A 988 14.224 76.668 70.011 1.00 62.32 N
ATOM 15 C2 U A 988 13.065 77.432 69.885 1.00 63.64 C
ATOM 16 O2 U A 988 13.070 78.623 69.614 1.00 63.84 O
ATOM 17 N3 U A 988 11.895 76.747 70.090 1.00 65.28 N
ATOM 18 C4 U A 988 11.755 75.408 70.400 1.00 66.25 C
ATOM 19 O4 U A 988 10.628 74.956 70.623 1.00 68.20 O
ATOM 20 C5 U A 988 12.989 74.683 70.497 1.00 64.01 C
ATOM 21 C6 U A 988 14.149 75.319 70.305 1.00 62.91 C
ATOM 22 P U A 989 19.271 79.842 69.826 1.00 53.73 P
ATOM 23 OP1 U A 989 19.071 81.248 69.392 1.00 55.28 O
ATOM 24 OP2 U A 989 20.169 78.950 69.045 1.00 52.38 O
ATOM 25 O5' U A 989 19.762 79.838 71.341 1.00 51.07 O
TER
ATOM 1 O3' C B1231 15.555 82.356 72.607 1.00 49.56 O
ATOM 2 P C B1232 14.620 82.310 71.300 1.00 51.34 P
ATOM 3 OP1 C B1232 15.098 81.210 70.436 1.00 51.29 O
ATOM 4 OP2 C B1232 14.527 83.688 70.748 1.00 52.62 O
ATOM 5 O5' C B1232 13.178 81.934 71.860 1.00 50.72 O
ATOM 6 C5' C B1232 12.956 80.696 72.554 1.00 49.92 C
ATOM 7 C4' C B1232 11.527 80.617 73.034 1.00 48.97 C
ATOM 8 O4' C B1232 11.256 81.711 73.949 1.00 48.54 O
ATOM 9 C3' C B1232 10.466 80.788 71.965 1.00 49.35 C
ATOM 10 O3' C B1232 10.253 79.591 71.239 1.00 50.59 O
ATOM 11 C2' C B1232 9.251 81.195 72.783 1.00 48.77 C
ATOM 12 O2' C B1232 8.628 80.098 73.418 1.00 47.46 O
ATOM 13 C1' C B1232 9.896 82.100 73.835 1.00 47.47 C
ATOM 14 N1 C B1232 9.832 83.534 73.489 1.00 46.71 N
ATOM 15 C2 C B1232 8.676 84.252 73.828 1.00 46.46 C
ATOM 16 O2 C B1232 7.744 83.662 74.396 1.00 47.29 O
ATOM 17 N3 C B1232 8.600 85.566 73.530 1.00 45.85 N
ATOM 18 C4 C B1232 9.618 86.169 72.918 1.00 45.17 C
ATOM 19 N4 C B1232 9.497 87.475 72.660 1.00 44.77 N
ATOM 20 C5 C B1232 10.805 85.464 72.549 1.00 43.70 C
ATOM 21 C6 C B1232 10.870 84.161 72.852 1.00 44.75 C
ATOM 22 P A B1233 9.722 79.670 69.730 1.00 53.20 P
ATOM 23 OP1 A B1233 9.641 78.265 69.259 1.00 52.44 O
ATOM 24 OP2 A B1233 10.534 80.651 68.969 1.00 52.67 O
ATOM 25 O5' A B1233 8.253 80.275 69.878 1.00 51.13 O
TER
ATOM 2 P U A 988 17.720 73.137 71.326 1.00 60.40 P
ATOM 3 OP1 U A 988 17.185 73.651 72.616 1.00 58.99 O
ATOM 4 OP2 U A 988 17.028 72.028 70.635 1.00 63.44 O
ATOM 5 O5' U A 988 17.811 74.356 70.309 1.00 60.77 O
ATOM 6 C5' U A 988 18.329 75.615 70.746 1.00 59.63 C
ATOM 7 C4' U A 988 17.785 76.740 69.900 1.00 58.75 C
ATOM 8 O4' U A 988 16.472 76.404 69.364 1.00 58.71 O
ATOM 9 C3' U A 988 17.601 78.024 70.697 1.00 58.26 C
ATOM 10 O3' U A 988 17.821 79.155 69.866 1.00 55.86 O
ATOM 11 C2' U A 988 16.133 77.933 71.098 1.00 59.27 C
ATOM 12 O2' U A 988 15.564 79.171 71.462 1.00 59.93 O
ATOM 13 C1' U A 988 15.520 77.346 69.825 1.00 60.09 C
ATOM 14 N1 U A 988 14.224 76.668 70.011 1.00 62.32 N
ATOM 15 C2 U A 988 13.065 77.432 69.885 1.00 63.64 C
ATOM 16 O2 U A 988 13.070 78.623 69.614 1.00 63.84 O
ATOM 17 N3 U A 988 11.895 76.747 70.090 1.00 65.28 N
ATOM 18 C4 U A 988 11.755 75.408 70.400 1.00 66.25 C
ATOM 19 O4 U A 988 10.628 74.956 70.623 1.00 68.20 O
ATOM 20 C5 U A 988 12.989 74.683 70.497 1.00 64.01 C
ATOM 21 C6 U A 988 14.149 75.319 70.305 1.00 62.91 C
ATOM 22 P U A 989 19.271 79.842 69.826 1.00 53.73 P
ATOM 23 OP1 U A 989 19.071 81.248 69.392 1.00 55.28 O
ATOM 24 OP2 U A 989 20.169 78.950 69.045 1.00 52.38 O
ATOM 25 O5' U A 989 19.762 79.838 71.341 1.00 51.07 O
TER
ATOM 1 O3' C B1231 15.555 82.356 72.607 1.00 49.56 O
ATOM 2 P C B1232 14.620 82.310 71.300 1.00 51.34 P
ATOM 3 OP1 C B1232 15.098 81.210 70.436 1.00 51.29 O
ATOM 4 OP2 C B1232 14.527 83.688 70.748 1.00 52.62 O
ATOM 5 O5' C B1232 13.178 81.934 71.860 1.00 50.72 O
ATOM 6 C5' C B1232 12.956 80.696 72.554 1.00 49.92 C
ATOM 7 C4' C B1232 11.527 80.617 73.034 1.00 48.97 C
ATOM 8 O4' C B1232 11.256 81.711 73.949 1.00 48.54 O
ATOM 9 C3' C B1232 10.466 80.788 71.965 1.00 49.35 C
ATOM 10 O3' C B1232 10.253 79.591 71.239 1.00 50.59 O
ATOM 11 C2' C B1232 9.251 81.195 72.783 1.00 48.77 C
ATOM 12 O2' C B1232 8.628 80.098 73.418 1.00 47.46 O
ATOM 13 C1' C B1232 9.896 82.100 73.835 1.00 47.47 C
ATOM 14 N1 C B1232 9.832 83.534 73.489 1.00 46.71 N
ATOM 15 C2 C B1232 8.676 84.252 73.828 1.00 46.46 C
ATOM 16 O2 C B1232 7.744 83.662 74.396 1.00 47.29 O
ATOM 17 N3 C B1232 8.600 85.566 73.530 1.00 45.85 N
ATOM 18 C4 C B1232 9.618 86.169 72.918 1.00 45.17 C
ATOM 19 N4 C B1232 9.497 87.475 72.660 1.00 44.77 N
ATOM 20 C5 C B1232 10.805 85.464 72.549 1.00 43.70 C
ATOM 21 C6 C B1232 10.870 84.161 72.852 1.00 44.75 C
ATOM 22 P A B1233 9.722 79.670 69.730 1.00 53.20 P
ATOM 23 OP1 A B1233 9.641 78.265 69.259 1.00 52.44 O
ATOM 24 OP2 A B1233 10.534 80.651 68.969 1.00 52.67 O
ATOM 25 O5' A B1233 8.253 80.275 69.878 1.00 51.13 O
TER
Atoms:
C4: (11.755,75.408,70.400)
N3: (11.895,76.747,70.090)
OP1: (17.185,73.651,72.616)
OP2: (17.028,72.028,70.635)
C2: (13.065,77.432,69.885)
C1': (15.520,77.346,69.825)
C3': (17.601,78.024,70.697)
O5': (17.811,74.356,70.309)
O4': (16.472,76.404,69.364)
C5': (18.329,75.615,70.746)
P: (17.720,73.137,71.326)
C4': (17.785,76.740,69.900)
C2': (16.133,77.933,71.098)
O2': (15.564,79.171,71.462)
N1: (14.224,76.668,70.011)
O4: (10.628,74.956,70.623)
O2: (13.070,78.623,69.614)
C6: (14.149,75.319,70.305)
C5: (12.989,74.683,70.497)
O3': (17.821,79.155,69.866)
N3: (11.895,76.747,70.090)
OP1: (17.185,73.651,72.616)
OP2: (17.028,72.028,70.635)
C2: (13.065,77.432,69.885)
C1': (15.520,77.346,69.825)
C3': (17.601,78.024,70.697)
O5': (17.811,74.356,70.309)
O4': (16.472,76.404,69.364)
C5': (18.329,75.615,70.746)
P: (17.720,73.137,71.326)
C4': (17.785,76.740,69.900)
C2': (16.133,77.933,71.098)
O2': (15.564,79.171,71.462)
N1: (14.224,76.668,70.011)
O4: (10.628,74.956,70.623)
O2: (13.070,78.623,69.614)
C6: (14.149,75.319,70.305)
C5: (12.989,74.683,70.497)
O3': (17.821,79.155,69.866)
C2: (8.676,84.252,73.828)
OP1: (15.098,81.210,70.436)
OP2: (14.527,83.688,70.748)
C4: (9.618,86.169,72.918)
O5': (13.178,81.934,71.860)
C3': (10.466,80.788,71.965)
C1': (9.896,82.100,73.835)
O4': (11.256,81.711,73.949)
C5': (12.956,80.696,72.554)
P: (14.620,82.310,71.300)
O2: (7.744,83.662,74.396)
C4': (11.527,80.617,73.034)
C2': (9.251,81.195,72.783)
O2': (8.628,80.098,73.418)
N1: (9.832,83.534,73.489)
N3: (8.600,85.566,73.530)
N4: (9.497,87.475,72.660)
C6: (10.870,84.161,72.852)
C5: (10.805,85.464,72.549)
O3': (10.253,79.591,71.239)
OP1: (15.098,81.210,70.436)
OP2: (14.527,83.688,70.748)
C4: (9.618,86.169,72.918)
O5': (13.178,81.934,71.860)
C3': (10.466,80.788,71.965)
C1': (9.896,82.100,73.835)
O4': (11.256,81.711,73.949)
C5': (12.956,80.696,72.554)
P: (14.620,82.310,71.300)
O2: (7.744,83.662,74.396)
C4': (11.527,80.617,73.034)
C2': (9.251,81.195,72.783)
O2': (8.628,80.098,73.418)
N1: (9.832,83.534,73.489)
N3: (8.600,85.566,73.530)
N4: (9.497,87.475,72.660)
C6: (10.870,84.161,72.852)
C5: (10.805,85.464,72.549)
O3': (10.253,79.591,71.239)
Image (generated by PyMOL):