Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:12004:12051
Extra
PDB:
ATOM 1 O3' C A2003 -16.031 -22.069 88.707 1.00 47.15 O
ATOM 2 P C A2004 -15.934 -22.628 90.208 1.00 52.56 P
ATOM 3 OP1 C A2004 -16.339 -24.072 90.164 1.00 52.74 O
ATOM 4 OP2 C A2004 -16.696 -21.701 91.075 1.00 52.79 O
ATOM 5 O5' C A2004 -14.393 -22.507 90.531 1.00 52.22 O
ATOM 6 C5' C A2004 -13.446 -23.182 89.733 1.00 51.95 C
ATOM 7 C4' C A2004 -12.485 -23.952 90.571 1.00 51.87 C
ATOM 8 O4' C A2004 -11.604 -23.035 91.257 1.00 51.69 O
ATOM 9 C3' C A2004 -13.099 -24.805 91.661 1.00 52.19 C
ATOM 10 O3' C A2004 -12.208 -25.889 91.878 1.00 52.10 O
ATOM 11 C2' C A2004 -13.045 -23.869 92.862 1.00 52.26 C
ATOM 12 O2' C A2004 -13.214 -24.500 94.118 1.00 52.51 O
ATOM 13 C1' C A2004 -11.643 -23.302 92.644 1.00 51.88 C
ATOM 14 N1 C A2004 -11.319 -22.035 93.350 1.00 51.83 N
ATOM 15 C2 C A2004 -9.973 -21.718 93.466 1.00 51.53 C
ATOM 16 O2 C A2004 -9.057 -22.496 93.087 1.00 51.33 O
ATOM 17 N3 C A2004 -9.705 -20.564 94.072 1.00 51.50 N
ATOM 18 C4 C A2004 -10.653 -19.759 94.554 1.00 51.74 C
ATOM 19 N4 C A2004 -10.304 -18.626 95.166 1.00 51.71 N
ATOM 20 C5 C A2004 -12.013 -20.049 94.422 1.00 52.03 C
ATOM 21 C6 C A2004 -12.275 -21.185 93.797 1.00 52.06 C
ATOM 22 P A A2005 -12.556 -27.332 91.296 1.00 54.10 P
ATOM 23 OP1 A A2005 -14.015 -27.307 90.960 1.00 54.39 O
ATOM 24 OP2 A A2005 -12.078 -28.330 92.281 1.00 54.20 O
ATOM 25 O5' A A2005 -11.695 -27.442 89.973 1.00 53.77 O
TER
ATOM 1 O3' A B2050 -7.992 -9.168 97.629 1.00 42.80 O
ATOM 2 P A B2051 -7.219 -10.471 98.124 1.00 43.19 P
ATOM 3 OP1 A B2051 -8.143 -11.208 98.959 1.00 43.51 O
ATOM 4 OP2 A B2051 -5.936 -10.039 98.702 1.00 43.04 O
ATOM 5 O5' A B2051 -6.957 -11.196 96.734 1.00 42.90 O
ATOM 6 C5' A B2051 -6.910 -12.578 96.604 1.00 42.86 C
ATOM 7 C4' A B2051 -5.511 -13.064 96.457 1.00 42.55 C
ATOM 8 O4' A B2051 -5.508 -14.441 96.818 1.00 42.62 O
ATOM 9 C3' A B2051 -4.917 -13.021 95.064 1.00 42.22 C
ATOM 10 O3' A B2051 -4.249 -11.808 94.824 1.00 42.06 O
ATOM 11 C2' A B2051 -3.964 -14.193 95.089 1.00 42.05 C
ATOM 12 O2' A B2051 -2.757 -13.820 95.743 1.00 41.92 O
ATOM 13 C1' A B2051 -4.667 -15.157 96.007 1.00 42.33 C
ATOM 14 N9 A B2051 -5.462 -16.185 95.342 1.00 42.40 N
ATOM 15 C8 A B2051 -6.808 -16.318 95.504 1.00 42.69 C
ATOM 16 N7 A B2051 -7.253 -17.385 94.894 1.00 42.72 N
ATOM 17 C5 A B2051 -6.117 -18.005 94.382 1.00 42.43 C
ATOM 18 C6 A B2051 -5.882 -19.177 93.668 1.00 42.33 C
ATOM 19 N6 A B2051 -6.783 -20.042 93.268 1.00 42.49 N
ATOM 20 N1 A B2051 -4.633 -19.460 93.329 1.00 42.05 N
ATOM 21 C2 A B2051 -3.661 -18.637 93.673 1.00 41.88 C
ATOM 22 N3 A B2051 -3.776 -17.526 94.352 1.00 41.96 N
ATOM 23 C4 A B2051 -5.018 -17.278 94.680 1.00 42.24 C
ATOM 24 P C B2052 -3.930 -11.262 93.328 1.00 42.87 P
ATOM 25 OP1 C B2052 -3.058 -10.076 93.495 1.00 42.75 O
ATOM 26 OP2 C B2052 -5.251 -11.090 92.655 1.00 43.04 O
ATOM 27 O5' C B2052 -3.107 -12.423 92.634 1.00 42.61 O
TER
ATOM 2 P C A2004 -15.934 -22.628 90.208 1.00 52.56 P
ATOM 3 OP1 C A2004 -16.339 -24.072 90.164 1.00 52.74 O
ATOM 4 OP2 C A2004 -16.696 -21.701 91.075 1.00 52.79 O
ATOM 5 O5' C A2004 -14.393 -22.507 90.531 1.00 52.22 O
ATOM 6 C5' C A2004 -13.446 -23.182 89.733 1.00 51.95 C
ATOM 7 C4' C A2004 -12.485 -23.952 90.571 1.00 51.87 C
ATOM 8 O4' C A2004 -11.604 -23.035 91.257 1.00 51.69 O
ATOM 9 C3' C A2004 -13.099 -24.805 91.661 1.00 52.19 C
ATOM 10 O3' C A2004 -12.208 -25.889 91.878 1.00 52.10 O
ATOM 11 C2' C A2004 -13.045 -23.869 92.862 1.00 52.26 C
ATOM 12 O2' C A2004 -13.214 -24.500 94.118 1.00 52.51 O
ATOM 13 C1' C A2004 -11.643 -23.302 92.644 1.00 51.88 C
ATOM 14 N1 C A2004 -11.319 -22.035 93.350 1.00 51.83 N
ATOM 15 C2 C A2004 -9.973 -21.718 93.466 1.00 51.53 C
ATOM 16 O2 C A2004 -9.057 -22.496 93.087 1.00 51.33 O
ATOM 17 N3 C A2004 -9.705 -20.564 94.072 1.00 51.50 N
ATOM 18 C4 C A2004 -10.653 -19.759 94.554 1.00 51.74 C
ATOM 19 N4 C A2004 -10.304 -18.626 95.166 1.00 51.71 N
ATOM 20 C5 C A2004 -12.013 -20.049 94.422 1.00 52.03 C
ATOM 21 C6 C A2004 -12.275 -21.185 93.797 1.00 52.06 C
ATOM 22 P A A2005 -12.556 -27.332 91.296 1.00 54.10 P
ATOM 23 OP1 A A2005 -14.015 -27.307 90.960 1.00 54.39 O
ATOM 24 OP2 A A2005 -12.078 -28.330 92.281 1.00 54.20 O
ATOM 25 O5' A A2005 -11.695 -27.442 89.973 1.00 53.77 O
TER
ATOM 1 O3' A B2050 -7.992 -9.168 97.629 1.00 42.80 O
ATOM 2 P A B2051 -7.219 -10.471 98.124 1.00 43.19 P
ATOM 3 OP1 A B2051 -8.143 -11.208 98.959 1.00 43.51 O
ATOM 4 OP2 A B2051 -5.936 -10.039 98.702 1.00 43.04 O
ATOM 5 O5' A B2051 -6.957 -11.196 96.734 1.00 42.90 O
ATOM 6 C5' A B2051 -6.910 -12.578 96.604 1.00 42.86 C
ATOM 7 C4' A B2051 -5.511 -13.064 96.457 1.00 42.55 C
ATOM 8 O4' A B2051 -5.508 -14.441 96.818 1.00 42.62 O
ATOM 9 C3' A B2051 -4.917 -13.021 95.064 1.00 42.22 C
ATOM 10 O3' A B2051 -4.249 -11.808 94.824 1.00 42.06 O
ATOM 11 C2' A B2051 -3.964 -14.193 95.089 1.00 42.05 C
ATOM 12 O2' A B2051 -2.757 -13.820 95.743 1.00 41.92 O
ATOM 13 C1' A B2051 -4.667 -15.157 96.007 1.00 42.33 C
ATOM 14 N9 A B2051 -5.462 -16.185 95.342 1.00 42.40 N
ATOM 15 C8 A B2051 -6.808 -16.318 95.504 1.00 42.69 C
ATOM 16 N7 A B2051 -7.253 -17.385 94.894 1.00 42.72 N
ATOM 17 C5 A B2051 -6.117 -18.005 94.382 1.00 42.43 C
ATOM 18 C6 A B2051 -5.882 -19.177 93.668 1.00 42.33 C
ATOM 19 N6 A B2051 -6.783 -20.042 93.268 1.00 42.49 N
ATOM 20 N1 A B2051 -4.633 -19.460 93.329 1.00 42.05 N
ATOM 21 C2 A B2051 -3.661 -18.637 93.673 1.00 41.88 C
ATOM 22 N3 A B2051 -3.776 -17.526 94.352 1.00 41.96 N
ATOM 23 C4 A B2051 -5.018 -17.278 94.680 1.00 42.24 C
ATOM 24 P C B2052 -3.930 -11.262 93.328 1.00 42.87 P
ATOM 25 OP1 C B2052 -3.058 -10.076 93.495 1.00 42.75 O
ATOM 26 OP2 C B2052 -5.251 -11.090 92.655 1.00 43.04 O
ATOM 27 O5' C B2052 -3.107 -12.423 92.634 1.00 42.61 O
TER
Atoms:
C2: (-9.973,-21.718,93.466)
OP1: (-16.339,-24.072,90.164)
OP2: (-16.696,-21.701,91.075)
C4: (-10.653,-19.759,94.554)
O5': (-14.393,-22.507,90.531)
C3': (-13.099,-24.805,91.661)
C1': (-11.643,-23.302,92.644)
O4': (-11.604,-23.035,91.257)
C5': (-13.446,-23.182,89.733)
P: (-15.934,-22.628,90.208)
O2: (-9.057,-22.496,93.087)
C4': (-12.485,-23.952,90.571)
C2': (-13.045,-23.869,92.862)
O2': (-13.214,-24.500,94.118)
N1: (-11.319,-22.035,93.350)
N3: (-9.705,-20.564,94.072)
N4: (-10.304,-18.626,95.166)
C6: (-12.275,-21.185,93.797)
C5: (-12.013,-20.049,94.422)
O3': (-12.208,-25.889,91.878)
OP1: (-16.339,-24.072,90.164)
OP2: (-16.696,-21.701,91.075)
C4: (-10.653,-19.759,94.554)
O5': (-14.393,-22.507,90.531)
C3': (-13.099,-24.805,91.661)
C1': (-11.643,-23.302,92.644)
O4': (-11.604,-23.035,91.257)
C5': (-13.446,-23.182,89.733)
P: (-15.934,-22.628,90.208)
O2: (-9.057,-22.496,93.087)
C4': (-12.485,-23.952,90.571)
C2': (-13.045,-23.869,92.862)
O2': (-13.214,-24.500,94.118)
N1: (-11.319,-22.035,93.350)
N3: (-9.705,-20.564,94.072)
N4: (-10.304,-18.626,95.166)
C6: (-12.275,-21.185,93.797)
C5: (-12.013,-20.049,94.422)
O3': (-12.208,-25.889,91.878)
OP1: (-8.143,-11.208,98.959)
OP2: (-5.936,-10.039,98.702)
C3': (-4.917,-13.021,95.064)
C1': (-4.667,-15.157,96.007)
C5': (-6.910,-12.578,96.604)
O4': (-5.508,-14.441,96.818)
C8: (-6.808,-16.318,95.504)
O2': (-2.757,-13.820,95.743)
C6: (-5.882,-19.177,93.668)
C5: (-6.117,-18.005,94.382)
C4: (-5.018,-17.278,94.680)
P: (-7.219,-10.471,98.124)
C4': (-5.511,-13.064,96.457)
C2': (-3.964,-14.193,95.089)
C2: (-3.661,-18.637,93.673)
N1: (-4.633,-19.460,93.329)
N3: (-3.776,-17.526,94.352)
N6: (-6.783,-20.042,93.268)
N7: (-7.253,-17.385,94.894)
N9: (-5.462,-16.185,95.342)
O5': (-6.957,-11.196,96.734)
O3': (-4.249,-11.808,94.824)
OP2: (-5.936,-10.039,98.702)
C3': (-4.917,-13.021,95.064)
C1': (-4.667,-15.157,96.007)
C5': (-6.910,-12.578,96.604)
O4': (-5.508,-14.441,96.818)
C8: (-6.808,-16.318,95.504)
O2': (-2.757,-13.820,95.743)
C6: (-5.882,-19.177,93.668)
C5: (-6.117,-18.005,94.382)
C4: (-5.018,-17.278,94.680)
P: (-7.219,-10.471,98.124)
C4': (-5.511,-13.064,96.457)
C2': (-3.964,-14.193,95.089)
C2: (-3.661,-18.637,93.673)
N1: (-4.633,-19.460,93.329)
N3: (-3.776,-17.526,94.352)
N6: (-6.783,-20.042,93.268)
N7: (-7.253,-17.385,94.894)
N9: (-5.462,-16.185,95.342)
O5': (-6.957,-11.196,96.734)
O3': (-4.249,-11.808,94.824)
Image (generated by PyMOL):