Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1KD3:B5:A4
Extra
PDB:
ATOM 1 O3' A A 4 15.189 -9.246 71.961 1.00 27.70 O
ATOM 2 P C A 5 14.059 -8.170 71.604 1.00 28.28 P
ATOM 3 OP1 C A 5 14.151 -7.881 70.146 1.00 28.42 O
ATOM 4 OP2 C A 5 14.138 -7.055 72.577 1.00 24.46 O
ATOM 5 O5' C A 5 12.705 -8.963 71.859 1.00 27.59 O
ATOM 6 C5' C A 5 12.514 -10.252 71.297 1.00 27.37 C
ATOM 7 C4' C A 5 11.497 -11.015 72.100 1.00 27.23 C
ATOM 8 O4' C A 5 12.031 -11.297 73.421 1.00 25.31 O
ATOM 9 C3' C A 5 10.229 -10.242 72.393 1.00 26.51 C
ATOM 10 O3' C A 5 9.339 -10.287 71.291 1.00 29.98 O
ATOM 11 C2' C A 5 9.687 -10.978 73.609 1.00 25.21 C
ATOM 12 O2' C A 5 9.073 -12.194 73.255 1.00 23.96 O
ATOM 13 C1' C A 5 10.977 -11.276 74.370 1.00 24.30 C
ATOM 14 N1 C A 5 11.288 -10.270 75.396 1.00 23.04 N
ATOM 15 C2 C A 5 10.641 -10.360 76.632 1.00 21.58 C
ATOM 16 O2 C A 5 9.806 -11.252 76.797 1.00 22.03 O
ATOM 17 N3 C A 5 10.942 -9.469 77.607 1.00 20.13 N
ATOM 18 C4 C A 5 11.838 -8.509 77.375 1.00 21.62 C
ATOM 19 N4 C A 5 12.114 -7.655 78.366 1.00 22.92 N
ATOM 20 C5 C A 5 12.497 -8.379 76.113 1.00 22.44 C
ATOM 21 C6 C A 5 12.194 -9.275 75.162 1.00 22.13 C
ATOM 22 P A A 6 8.061 -9.327 71.283 1.00 31.57 P
ATOM 23 OP1 A A 6 7.226 -9.706 70.113 1.00 32.66 O
ATOM 24 OP2 A A 6 8.496 -7.920 71.452 1.00 29.45 O
ATOM 25 O5' A A 6 7.302 -9.773 72.605 1.00 30.34 O
TER
ATOM 1 O3' C B 3 13.388 -2.225 83.481 1.00 27.37 O
ATOM 2 P A B 4 14.665 -3.163 83.740 1.00 30.46 P
ATOM 3 OP1 A B 4 14.865 -3.229 85.211 1.00 30.26 O
ATOM 4 OP2 A B 4 15.778 -2.719 82.868 1.00 30.48 O
ATOM 5 O5' A B 4 14.179 -4.593 83.244 1.00 28.38 O
ATOM 6 C5' A B 4 14.070 -5.680 84.157 1.00 27.82 C
ATOM 7 C4' A B 4 12.784 -5.575 84.942 1.00 26.20 C
ATOM 8 O4' A B 4 11.702 -5.218 84.051 1.00 24.12 O
ATOM 9 C3' A B 4 12.363 -6.870 85.617 1.00 26.43 C
ATOM 10 O3' A B 4 12.917 -6.945 86.924 1.00 28.20 O
ATOM 11 C2' A B 4 10.846 -6.768 85.620 1.00 25.21 C
ATOM 12 O2' A B 4 10.330 -5.977 86.675 1.00 25.53 O
ATOM 13 C1' A B 4 10.600 -6.066 84.283 1.00 24.48 C
ATOM 14 N9 A B 4 10.521 -6.979 83.147 1.00 21.69 N
ATOM 15 C8 A B 4 11.296 -6.954 82.013 1.00 21.91 C
ATOM 16 N7 A B 4 10.973 -7.869 81.133 1.00 19.47 N
ATOM 17 C5 A B 4 9.923 -8.547 81.731 1.00 21.48 C
ATOM 18 C6 A B 4 9.130 -9.619 81.297 1.00 21.69 C
ATOM 19 N6 A B 4 9.278 -10.212 80.104 1.00 21.48 N
ATOM 20 N1 A B 4 8.164 -10.065 82.132 1.00 23.92 N
ATOM 21 C2 A B 4 8.016 -9.458 83.323 1.00 21.63 C
ATOM 22 N3 A B 4 8.702 -8.437 83.840 1.00 21.85 N
ATOM 23 C4 A B 4 9.646 -8.021 82.981 1.00 21.65 C
ATOM 24 P C B 5 14.012 -8.073 87.255 1.00 29.34 P
ATOM 25 OP1 C B 5 14.355 -7.971 88.701 1.00 30.62 O
ATOM 26 OP2 C B 5 15.091 -8.001 86.241 1.00 25.81 O
ATOM 27 O5' C B 5 13.211 -9.428 87.035 1.00 28.79 O
TER
ATOM 2 P C A 5 14.059 -8.170 71.604 1.00 28.28 P
ATOM 3 OP1 C A 5 14.151 -7.881 70.146 1.00 28.42 O
ATOM 4 OP2 C A 5 14.138 -7.055 72.577 1.00 24.46 O
ATOM 5 O5' C A 5 12.705 -8.963 71.859 1.00 27.59 O
ATOM 6 C5' C A 5 12.514 -10.252 71.297 1.00 27.37 C
ATOM 7 C4' C A 5 11.497 -11.015 72.100 1.00 27.23 C
ATOM 8 O4' C A 5 12.031 -11.297 73.421 1.00 25.31 O
ATOM 9 C3' C A 5 10.229 -10.242 72.393 1.00 26.51 C
ATOM 10 O3' C A 5 9.339 -10.287 71.291 1.00 29.98 O
ATOM 11 C2' C A 5 9.687 -10.978 73.609 1.00 25.21 C
ATOM 12 O2' C A 5 9.073 -12.194 73.255 1.00 23.96 O
ATOM 13 C1' C A 5 10.977 -11.276 74.370 1.00 24.30 C
ATOM 14 N1 C A 5 11.288 -10.270 75.396 1.00 23.04 N
ATOM 15 C2 C A 5 10.641 -10.360 76.632 1.00 21.58 C
ATOM 16 O2 C A 5 9.806 -11.252 76.797 1.00 22.03 O
ATOM 17 N3 C A 5 10.942 -9.469 77.607 1.00 20.13 N
ATOM 18 C4 C A 5 11.838 -8.509 77.375 1.00 21.62 C
ATOM 19 N4 C A 5 12.114 -7.655 78.366 1.00 22.92 N
ATOM 20 C5 C A 5 12.497 -8.379 76.113 1.00 22.44 C
ATOM 21 C6 C A 5 12.194 -9.275 75.162 1.00 22.13 C
ATOM 22 P A A 6 8.061 -9.327 71.283 1.00 31.57 P
ATOM 23 OP1 A A 6 7.226 -9.706 70.113 1.00 32.66 O
ATOM 24 OP2 A A 6 8.496 -7.920 71.452 1.00 29.45 O
ATOM 25 O5' A A 6 7.302 -9.773 72.605 1.00 30.34 O
TER
ATOM 1 O3' C B 3 13.388 -2.225 83.481 1.00 27.37 O
ATOM 2 P A B 4 14.665 -3.163 83.740 1.00 30.46 P
ATOM 3 OP1 A B 4 14.865 -3.229 85.211 1.00 30.26 O
ATOM 4 OP2 A B 4 15.778 -2.719 82.868 1.00 30.48 O
ATOM 5 O5' A B 4 14.179 -4.593 83.244 1.00 28.38 O
ATOM 6 C5' A B 4 14.070 -5.680 84.157 1.00 27.82 C
ATOM 7 C4' A B 4 12.784 -5.575 84.942 1.00 26.20 C
ATOM 8 O4' A B 4 11.702 -5.218 84.051 1.00 24.12 O
ATOM 9 C3' A B 4 12.363 -6.870 85.617 1.00 26.43 C
ATOM 10 O3' A B 4 12.917 -6.945 86.924 1.00 28.20 O
ATOM 11 C2' A B 4 10.846 -6.768 85.620 1.00 25.21 C
ATOM 12 O2' A B 4 10.330 -5.977 86.675 1.00 25.53 O
ATOM 13 C1' A B 4 10.600 -6.066 84.283 1.00 24.48 C
ATOM 14 N9 A B 4 10.521 -6.979 83.147 1.00 21.69 N
ATOM 15 C8 A B 4 11.296 -6.954 82.013 1.00 21.91 C
ATOM 16 N7 A B 4 10.973 -7.869 81.133 1.00 19.47 N
ATOM 17 C5 A B 4 9.923 -8.547 81.731 1.00 21.48 C
ATOM 18 C6 A B 4 9.130 -9.619 81.297 1.00 21.69 C
ATOM 19 N6 A B 4 9.278 -10.212 80.104 1.00 21.48 N
ATOM 20 N1 A B 4 8.164 -10.065 82.132 1.00 23.92 N
ATOM 21 C2 A B 4 8.016 -9.458 83.323 1.00 21.63 C
ATOM 22 N3 A B 4 8.702 -8.437 83.840 1.00 21.85 N
ATOM 23 C4 A B 4 9.646 -8.021 82.981 1.00 21.65 C
ATOM 24 P C B 5 14.012 -8.073 87.255 1.00 29.34 P
ATOM 25 OP1 C B 5 14.355 -7.971 88.701 1.00 30.62 O
ATOM 26 OP2 C B 5 15.091 -8.001 86.241 1.00 25.81 O
ATOM 27 O5' C B 5 13.211 -9.428 87.035 1.00 28.79 O
TER
Atoms:
C2: (10.641,-10.360,76.632)
OP1: (14.151,-7.881,70.146)
OP2: (14.138,-7.055,72.577)
C4: (11.838,-8.509,77.375)
O5': (12.705,-8.963,71.859)
C3': (10.229,-10.242,72.393)
C1': (10.977,-11.276,74.370)
O4': (12.031,-11.297,73.421)
C5': (12.514,-10.252,71.297)
P: (14.059,-8.170,71.604)
O2: (9.806,-11.252,76.797)
C4': (11.497,-11.015,72.100)
C2': (9.687,-10.978,73.609)
O2': (9.073,-12.194,73.255)
N1: (11.288,-10.270,75.396)
N3: (10.942,-9.469,77.607)
N4: (12.114,-7.655,78.366)
C6: (12.194,-9.275,75.162)
C5: (12.497,-8.379,76.113)
O3': (9.339,-10.287,71.291)
OP1: (14.151,-7.881,70.146)
OP2: (14.138,-7.055,72.577)
C4: (11.838,-8.509,77.375)
O5': (12.705,-8.963,71.859)
C3': (10.229,-10.242,72.393)
C1': (10.977,-11.276,74.370)
O4': (12.031,-11.297,73.421)
C5': (12.514,-10.252,71.297)
P: (14.059,-8.170,71.604)
O2: (9.806,-11.252,76.797)
C4': (11.497,-11.015,72.100)
C2': (9.687,-10.978,73.609)
O2': (9.073,-12.194,73.255)
N1: (11.288,-10.270,75.396)
N3: (10.942,-9.469,77.607)
N4: (12.114,-7.655,78.366)
C6: (12.194,-9.275,75.162)
C5: (12.497,-8.379,76.113)
O3': (9.339,-10.287,71.291)
OP1: (14.865,-3.229,85.211)
OP2: (15.778,-2.719,82.868)
C3': (12.363,-6.870,85.617)
C1': (10.600,-6.066,84.283)
C5': (14.070,-5.680,84.157)
O4': (11.702,-5.218,84.051)
C8: (11.296,-6.954,82.013)
O2': (10.330,-5.977,86.675)
C6: (9.130,-9.619,81.297)
C5: (9.923,-8.547,81.731)
C4: (9.646,-8.021,82.981)
P: (14.665,-3.163,83.740)
C4': (12.784,-5.575,84.942)
C2': (10.846,-6.768,85.620)
C2: (8.016,-9.458,83.323)
N1: (8.164,-10.065,82.132)
N3: (8.702,-8.437,83.840)
N6: (9.278,-10.212,80.104)
N7: (10.973,-7.869,81.133)
N9: (10.521,-6.979,83.147)
O5': (14.179,-4.593,83.244)
O3': (12.917,-6.945,86.924)
OP2: (15.778,-2.719,82.868)
C3': (12.363,-6.870,85.617)
C1': (10.600,-6.066,84.283)
C5': (14.070,-5.680,84.157)
O4': (11.702,-5.218,84.051)
C8: (11.296,-6.954,82.013)
O2': (10.330,-5.977,86.675)
C6: (9.130,-9.619,81.297)
C5: (9.923,-8.547,81.731)
C4: (9.646,-8.021,82.981)
P: (14.665,-3.163,83.740)
C4': (12.784,-5.575,84.942)
C2': (10.846,-6.768,85.620)
C2: (8.016,-9.458,83.323)
N1: (8.164,-10.065,82.132)
N3: (8.702,-8.437,83.840)
N6: (9.278,-10.212,80.104)
N7: (10.973,-7.869,81.133)
N9: (10.521,-6.979,83.147)
O5': (14.179,-4.593,83.244)
O3': (12.917,-6.945,86.924)
Image (generated by PyMOL):