Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
1YJ9:01002:0913
Extra
PDB:
ATOM 1 O3' U A1001 49.181 96.739 82.965 1.00 32.71 O
ATOM 2 P C A1002 50.669 97.319 83.086 1.00 34.07 P
ATOM 3 OP1 C A1002 50.753 98.077 84.354 1.00 33.50 O
ATOM 4 OP2 C A1002 51.016 97.975 81.803 1.00 32.80 O
ATOM 5 O5' C A1002 51.571 96.023 83.212 1.00 32.34 O
ATOM 6 C5' C A1002 51.300 95.047 84.208 1.00 33.31 C
ATOM 7 C4' C A1002 52.301 93.939 84.117 1.00 35.74 C
ATOM 8 O4' C A1002 52.068 93.165 82.924 1.00 36.37 O
ATOM 9 C3' C A1002 53.745 94.380 83.954 1.00 36.47 C
ATOM 10 O3' C A1002 54.267 94.764 85.219 1.00 40.87 O
ATOM 11 C2' C A1002 54.393 93.099 83.440 1.00 36.41 C
ATOM 12 O2' C A1002 54.631 92.172 84.477 1.00 38.01 O
ATOM 13 C1' C A1002 53.276 92.519 82.566 1.00 36.34 C
ATOM 14 N1 C A1002 53.478 92.635 81.113 1.00 35.75 N
ATOM 15 C2 C A1002 54.317 91.712 80.482 1.00 37.16 C
ATOM 16 O2 C A1002 54.872 90.836 81.168 1.00 37.16 O
ATOM 17 N3 C A1002 54.504 91.795 79.145 1.00 36.97 N
ATOM 18 C4 C A1002 53.891 92.751 78.444 1.00 36.38 C
ATOM 19 N4 C A1002 54.102 92.791 77.130 1.00 37.07 N
ATOM 20 C5 C A1002 53.035 93.706 79.061 1.00 36.22 C
ATOM 21 C6 C A1002 52.858 93.613 80.385 1.00 35.87 C
ATOM 22 P C A1003 55.351 95.940 85.332 1.00 41.76 P
ATOM 23 OP1 C A1003 56.052 96.083 84.042 1.00 44.77 O
ATOM 24 OP2 C A1003 56.128 95.613 86.556 1.00 43.73 O
ATOM 25 O5' C A1003 54.530 97.288 85.603 1.00 41.92 O
TER
ATOM 1 O3' C B 912 55.739 94.991 71.695 1.00 38.31 O
ATOM 2 P A B 913 54.354 94.183 71.656 1.00 41.03 P
ATOM 3 OP1 A B 913 53.670 94.655 70.426 1.00 39.84 O
ATOM 4 OP2 A B 913 53.641 94.250 72.976 1.00 38.18 O
ATOM 5 O5' A B 913 54.832 92.684 71.422 1.00 38.74 O
ATOM 6 C5' A B 913 55.627 92.352 70.277 1.00 38.17 C
ATOM 7 C4' A B 913 56.252 90.992 70.445 1.00 36.96 C
ATOM 8 O4' A B 913 57.235 91.033 71.506 1.00 36.67 O
ATOM 9 C3' A B 913 55.314 89.877 70.859 1.00 36.19 C
ATOM 10 O3' A B 913 54.604 89.361 69.743 1.00 37.70 O
ATOM 11 C2' A B 913 56.290 88.868 71.430 1.00 36.56 C
ATOM 12 O2' A B 913 56.995 88.214 70.400 1.00 36.87 O
ATOM 13 C1' A B 913 57.260 89.788 72.173 1.00 35.18 C
ATOM 14 N9 A B 913 56.891 90.008 73.572 1.00 33.81 N
ATOM 15 C8 A B 913 56.207 91.065 74.116 1.00 34.01 C
ATOM 16 N7 A B 913 56.044 90.977 75.415 1.00 33.66 N
ATOM 17 C5 A B 913 56.660 89.778 75.749 1.00 32.04 C
ATOM 18 C6 A B 913 56.825 89.105 76.972 1.00 31.06 C
ATOM 19 N6 A B 913 56.391 89.567 78.142 1.00 31.19 N
ATOM 20 N1 A B 913 57.464 87.923 76.954 1.00 32.24 N
ATOM 21 C2 A B 913 57.920 87.457 75.785 1.00 32.62 C
ATOM 22 N3 A B 913 57.838 87.995 74.577 1.00 32.46 N
ATOM 23 C4 A B 913 57.183 89.169 74.625 1.00 33.18 C
ATOM 24 P U B 914 53.165 88.676 69.955 1.00 39.82 P
ATOM 25 OP1 U B 914 52.661 88.288 68.615 1.00 39.38 O
ATOM 26 OP2 U B 914 52.333 89.544 70.822 1.00 38.58 O
ATOM 27 O5' U B 914 53.492 87.350 70.764 1.00 35.29 O
TER
ATOM 2 P C A1002 50.669 97.319 83.086 1.00 34.07 P
ATOM 3 OP1 C A1002 50.753 98.077 84.354 1.00 33.50 O
ATOM 4 OP2 C A1002 51.016 97.975 81.803 1.00 32.80 O
ATOM 5 O5' C A1002 51.571 96.023 83.212 1.00 32.34 O
ATOM 6 C5' C A1002 51.300 95.047 84.208 1.00 33.31 C
ATOM 7 C4' C A1002 52.301 93.939 84.117 1.00 35.74 C
ATOM 8 O4' C A1002 52.068 93.165 82.924 1.00 36.37 O
ATOM 9 C3' C A1002 53.745 94.380 83.954 1.00 36.47 C
ATOM 10 O3' C A1002 54.267 94.764 85.219 1.00 40.87 O
ATOM 11 C2' C A1002 54.393 93.099 83.440 1.00 36.41 C
ATOM 12 O2' C A1002 54.631 92.172 84.477 1.00 38.01 O
ATOM 13 C1' C A1002 53.276 92.519 82.566 1.00 36.34 C
ATOM 14 N1 C A1002 53.478 92.635 81.113 1.00 35.75 N
ATOM 15 C2 C A1002 54.317 91.712 80.482 1.00 37.16 C
ATOM 16 O2 C A1002 54.872 90.836 81.168 1.00 37.16 O
ATOM 17 N3 C A1002 54.504 91.795 79.145 1.00 36.97 N
ATOM 18 C4 C A1002 53.891 92.751 78.444 1.00 36.38 C
ATOM 19 N4 C A1002 54.102 92.791 77.130 1.00 37.07 N
ATOM 20 C5 C A1002 53.035 93.706 79.061 1.00 36.22 C
ATOM 21 C6 C A1002 52.858 93.613 80.385 1.00 35.87 C
ATOM 22 P C A1003 55.351 95.940 85.332 1.00 41.76 P
ATOM 23 OP1 C A1003 56.052 96.083 84.042 1.00 44.77 O
ATOM 24 OP2 C A1003 56.128 95.613 86.556 1.00 43.73 O
ATOM 25 O5' C A1003 54.530 97.288 85.603 1.00 41.92 O
TER
ATOM 1 O3' C B 912 55.739 94.991 71.695 1.00 38.31 O
ATOM 2 P A B 913 54.354 94.183 71.656 1.00 41.03 P
ATOM 3 OP1 A B 913 53.670 94.655 70.426 1.00 39.84 O
ATOM 4 OP2 A B 913 53.641 94.250 72.976 1.00 38.18 O
ATOM 5 O5' A B 913 54.832 92.684 71.422 1.00 38.74 O
ATOM 6 C5' A B 913 55.627 92.352 70.277 1.00 38.17 C
ATOM 7 C4' A B 913 56.252 90.992 70.445 1.00 36.96 C
ATOM 8 O4' A B 913 57.235 91.033 71.506 1.00 36.67 O
ATOM 9 C3' A B 913 55.314 89.877 70.859 1.00 36.19 C
ATOM 10 O3' A B 913 54.604 89.361 69.743 1.00 37.70 O
ATOM 11 C2' A B 913 56.290 88.868 71.430 1.00 36.56 C
ATOM 12 O2' A B 913 56.995 88.214 70.400 1.00 36.87 O
ATOM 13 C1' A B 913 57.260 89.788 72.173 1.00 35.18 C
ATOM 14 N9 A B 913 56.891 90.008 73.572 1.00 33.81 N
ATOM 15 C8 A B 913 56.207 91.065 74.116 1.00 34.01 C
ATOM 16 N7 A B 913 56.044 90.977 75.415 1.00 33.66 N
ATOM 17 C5 A B 913 56.660 89.778 75.749 1.00 32.04 C
ATOM 18 C6 A B 913 56.825 89.105 76.972 1.00 31.06 C
ATOM 19 N6 A B 913 56.391 89.567 78.142 1.00 31.19 N
ATOM 20 N1 A B 913 57.464 87.923 76.954 1.00 32.24 N
ATOM 21 C2 A B 913 57.920 87.457 75.785 1.00 32.62 C
ATOM 22 N3 A B 913 57.838 87.995 74.577 1.00 32.46 N
ATOM 23 C4 A B 913 57.183 89.169 74.625 1.00 33.18 C
ATOM 24 P U B 914 53.165 88.676 69.955 1.00 39.82 P
ATOM 25 OP1 U B 914 52.661 88.288 68.615 1.00 39.38 O
ATOM 26 OP2 U B 914 52.333 89.544 70.822 1.00 38.58 O
ATOM 27 O5' U B 914 53.492 87.350 70.764 1.00 35.29 O
TER
Atoms:
C2: (54.317,91.712,80.482)
OP1: (50.753,98.077,84.354)
OP2: (51.016,97.975,81.803)
C4: (53.891,92.751,78.444)
O5': (51.571,96.023,83.212)
C3': (53.745,94.380,83.954)
C1': (53.276,92.519,82.566)
O4': (52.068,93.165,82.924)
C5': (51.300,95.047,84.208)
P: (50.669,97.319,83.086)
O2: (54.872,90.836,81.168)
C4': (52.301,93.939,84.117)
C2': (54.393,93.099,83.440)
O2': (54.631,92.172,84.477)
N1: (53.478,92.635,81.113)
N3: (54.504,91.795,79.145)
N4: (54.102,92.791,77.130)
C6: (52.858,93.613,80.385)
C5: (53.035,93.706,79.061)
O3': (54.267,94.764,85.219)
OP1: (50.753,98.077,84.354)
OP2: (51.016,97.975,81.803)
C4: (53.891,92.751,78.444)
O5': (51.571,96.023,83.212)
C3': (53.745,94.380,83.954)
C1': (53.276,92.519,82.566)
O4': (52.068,93.165,82.924)
C5': (51.300,95.047,84.208)
P: (50.669,97.319,83.086)
O2: (54.872,90.836,81.168)
C4': (52.301,93.939,84.117)
C2': (54.393,93.099,83.440)
O2': (54.631,92.172,84.477)
N1: (53.478,92.635,81.113)
N3: (54.504,91.795,79.145)
N4: (54.102,92.791,77.130)
C6: (52.858,93.613,80.385)
C5: (53.035,93.706,79.061)
O3': (54.267,94.764,85.219)
OP1: (53.670,94.655,70.426)
OP2: (53.641,94.250,72.976)
C3': (55.314,89.877,70.859)
C1': (57.260,89.788,72.173)
C5': (55.627,92.352,70.277)
O4': (57.235,91.033,71.506)
C8: (56.207,91.065,74.116)
O2': (56.995,88.214,70.400)
C6: (56.825,89.105,76.972)
C5: (56.660,89.778,75.749)
C4: (57.183,89.169,74.625)
P: (54.354,94.183,71.656)
C4': (56.252,90.992,70.445)
C2': (56.290,88.868,71.430)
C2: (57.920,87.457,75.785)
N1: (57.464,87.923,76.954)
N3: (57.838,87.995,74.577)
N6: (56.391,89.567,78.142)
N7: (56.044,90.977,75.415)
N9: (56.891,90.008,73.572)
O5': (54.832,92.684,71.422)
O3': (54.604,89.361,69.743)
OP2: (53.641,94.250,72.976)
C3': (55.314,89.877,70.859)
C1': (57.260,89.788,72.173)
C5': (55.627,92.352,70.277)
O4': (57.235,91.033,71.506)
C8: (56.207,91.065,74.116)
O2': (56.995,88.214,70.400)
C6: (56.825,89.105,76.972)
C5: (56.660,89.778,75.749)
C4: (57.183,89.169,74.625)
P: (54.354,94.183,71.656)
C4': (56.252,90.992,70.445)
C2': (56.290,88.868,71.430)
C2: (57.920,87.457,75.785)
N1: (57.464,87.923,76.954)
N3: (57.838,87.995,74.577)
N6: (56.391,89.567,78.142)
N7: (56.044,90.977,75.415)
N9: (56.891,90.008,73.572)
O5': (54.832,92.684,71.422)
O3': (54.604,89.361,69.743)
Image (generated by PyMOL):