Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
2VQF:A139:A160
Extra
PDB:
ATOM 1 O3' A A 138 107.806 28.641 -5.601 1.00 78.12 O
ATOM 2 P C A 139 108.753 27.932 -4.526 1.00 77.75 P
ATOM 3 OP1 C A 139 109.724 27.093 -5.294 1.00 77.48 O
ATOM 4 OP2 C A 139 107.888 27.314 -3.483 1.00 77.14 O
ATOM 5 O5' C A 139 109.544 29.144 -3.869 1.00 76.10 O
ATOM 6 C5' C A 139 110.574 29.845 -4.586 1.00 73.58 C
ATOM 7 C4' C A 139 111.224 30.859 -3.680 1.00 71.84 C
ATOM 8 O4' C A 139 110.208 31.784 -3.229 1.00 71.60 O
ATOM 9 C3' C A 139 111.826 30.285 -2.408 1.00 70.91 C
ATOM 10 O3' C A 139 113.165 29.903 -2.636 1.00 70.26 O
ATOM 11 C2' C A 139 111.724 31.437 -1.416 1.00 70.94 C
ATOM 12 O2' C A 139 112.815 32.330 -1.501 1.00 70.92 O
ATOM 13 C1' C A 139 110.450 32.144 -1.882 1.00 71.06 C
ATOM 14 N1 C A 139 109.233 31.869 -1.088 1.00 70.96 N
ATOM 15 C2 C A 139 109.028 32.581 0.102 1.00 70.59 C
ATOM 16 O2 C A 139 109.902 33.371 0.486 1.00 71.39 O
ATOM 17 N3 C A 139 107.889 32.387 0.803 1.00 69.34 N
ATOM 18 C4 C A 139 106.978 31.516 0.366 1.00 70.37 C
ATOM 19 N4 C A 139 105.852 31.380 1.073 1.00 69.98 N
ATOM 20 C5 C A 139 107.176 30.751 -0.820 1.00 71.12 C
ATOM 21 C6 C A 139 108.306 30.955 -1.509 1.00 71.18 C
ATOM 22 P A A 140 113.999 29.181 -1.467 1.00 71.27 P
ATOM 23 OP1 A A 140 115.340 28.849 -2.050 1.00 69.28 O
ATOM 24 OP2 A A 140 113.161 28.118 -0.837 1.00 72.75 O
ATOM 25 O5' A A 140 114.202 30.319 -0.398 1.00 70.57 O
TER
ATOM 1 O3' U B 159 101.253 28.393 4.000 1.00 72.78 O
ATOM 2 P A B 160 100.576 29.510 3.067 1.00 72.61 P
ATOM 3 OP1 A B 160 99.097 29.284 3.037 1.00 71.54 O
ATOM 4 OP2 A B 160 101.333 29.526 1.793 1.00 74.00 O
ATOM 5 O5' A B 160 100.827 30.840 3.887 1.00 71.23 O
ATOM 6 C5' A B 160 100.337 30.952 5.226 1.00 69.95 C
ATOM 7 C4' A B 160 100.656 32.303 5.798 1.00 69.81 C
ATOM 8 O4' A B 160 102.047 32.378 6.195 1.00 70.93 O
ATOM 9 C3' A B 160 100.458 33.482 4.875 1.00 69.35 C
ATOM 10 O3' A B 160 99.120 33.874 4.806 1.00 69.38 O
ATOM 11 C2' A B 160 101.345 34.539 5.514 1.00 70.63 C
ATOM 12 O2' A B 160 100.725 35.132 6.636 1.00 71.63 O
ATOM 13 C1' A B 160 102.523 33.698 6.004 1.00 71.05 C
ATOM 14 N9 A B 160 103.645 33.650 5.061 1.00 72.53 N
ATOM 15 C8 A B 160 103.812 32.791 4.000 1.00 72.77 C
ATOM 16 N7 A B 160 104.949 32.947 3.368 1.00 71.53 N
ATOM 17 C5 A B 160 105.569 33.982 4.048 1.00 71.04 C
ATOM 18 C6 A B 160 106.807 34.601 3.879 1.00 71.39 C
ATOM 19 N6 A B 160 107.692 34.231 2.958 1.00 72.93 N
ATOM 20 N1 A B 160 107.122 35.618 4.708 1.00 73.73 N
ATOM 21 C2 A B 160 106.244 35.968 5.653 1.00 74.25 C
ATOM 22 N3 A B 160 105.050 35.448 5.925 1.00 74.44 N
ATOM 23 C4 A B 160 104.768 34.444 5.077 1.00 72.51 C
ATOM 24 P A B 161 98.582 34.574 3.463 1.00 72.39 P
ATOM 25 OP1 A B 161 97.074 34.615 3.475 1.00 70.18 O
ATOM 26 OP2 A B 161 99.302 33.922 2.307 1.00 69.61 O
ATOM 27 O5' A B 161 99.082 36.072 3.641 1.00 71.07 O
TER
ATOM 2 P C A 139 108.753 27.932 -4.526 1.00 77.75 P
ATOM 3 OP1 C A 139 109.724 27.093 -5.294 1.00 77.48 O
ATOM 4 OP2 C A 139 107.888 27.314 -3.483 1.00 77.14 O
ATOM 5 O5' C A 139 109.544 29.144 -3.869 1.00 76.10 O
ATOM 6 C5' C A 139 110.574 29.845 -4.586 1.00 73.58 C
ATOM 7 C4' C A 139 111.224 30.859 -3.680 1.00 71.84 C
ATOM 8 O4' C A 139 110.208 31.784 -3.229 1.00 71.60 O
ATOM 9 C3' C A 139 111.826 30.285 -2.408 1.00 70.91 C
ATOM 10 O3' C A 139 113.165 29.903 -2.636 1.00 70.26 O
ATOM 11 C2' C A 139 111.724 31.437 -1.416 1.00 70.94 C
ATOM 12 O2' C A 139 112.815 32.330 -1.501 1.00 70.92 O
ATOM 13 C1' C A 139 110.450 32.144 -1.882 1.00 71.06 C
ATOM 14 N1 C A 139 109.233 31.869 -1.088 1.00 70.96 N
ATOM 15 C2 C A 139 109.028 32.581 0.102 1.00 70.59 C
ATOM 16 O2 C A 139 109.902 33.371 0.486 1.00 71.39 O
ATOM 17 N3 C A 139 107.889 32.387 0.803 1.00 69.34 N
ATOM 18 C4 C A 139 106.978 31.516 0.366 1.00 70.37 C
ATOM 19 N4 C A 139 105.852 31.380 1.073 1.00 69.98 N
ATOM 20 C5 C A 139 107.176 30.751 -0.820 1.00 71.12 C
ATOM 21 C6 C A 139 108.306 30.955 -1.509 1.00 71.18 C
ATOM 22 P A A 140 113.999 29.181 -1.467 1.00 71.27 P
ATOM 23 OP1 A A 140 115.340 28.849 -2.050 1.00 69.28 O
ATOM 24 OP2 A A 140 113.161 28.118 -0.837 1.00 72.75 O
ATOM 25 O5' A A 140 114.202 30.319 -0.398 1.00 70.57 O
TER
ATOM 1 O3' U B 159 101.253 28.393 4.000 1.00 72.78 O
ATOM 2 P A B 160 100.576 29.510 3.067 1.00 72.61 P
ATOM 3 OP1 A B 160 99.097 29.284 3.037 1.00 71.54 O
ATOM 4 OP2 A B 160 101.333 29.526 1.793 1.00 74.00 O
ATOM 5 O5' A B 160 100.827 30.840 3.887 1.00 71.23 O
ATOM 6 C5' A B 160 100.337 30.952 5.226 1.00 69.95 C
ATOM 7 C4' A B 160 100.656 32.303 5.798 1.00 69.81 C
ATOM 8 O4' A B 160 102.047 32.378 6.195 1.00 70.93 O
ATOM 9 C3' A B 160 100.458 33.482 4.875 1.00 69.35 C
ATOM 10 O3' A B 160 99.120 33.874 4.806 1.00 69.38 O
ATOM 11 C2' A B 160 101.345 34.539 5.514 1.00 70.63 C
ATOM 12 O2' A B 160 100.725 35.132 6.636 1.00 71.63 O
ATOM 13 C1' A B 160 102.523 33.698 6.004 1.00 71.05 C
ATOM 14 N9 A B 160 103.645 33.650 5.061 1.00 72.53 N
ATOM 15 C8 A B 160 103.812 32.791 4.000 1.00 72.77 C
ATOM 16 N7 A B 160 104.949 32.947 3.368 1.00 71.53 N
ATOM 17 C5 A B 160 105.569 33.982 4.048 1.00 71.04 C
ATOM 18 C6 A B 160 106.807 34.601 3.879 1.00 71.39 C
ATOM 19 N6 A B 160 107.692 34.231 2.958 1.00 72.93 N
ATOM 20 N1 A B 160 107.122 35.618 4.708 1.00 73.73 N
ATOM 21 C2 A B 160 106.244 35.968 5.653 1.00 74.25 C
ATOM 22 N3 A B 160 105.050 35.448 5.925 1.00 74.44 N
ATOM 23 C4 A B 160 104.768 34.444 5.077 1.00 72.51 C
ATOM 24 P A B 161 98.582 34.574 3.463 1.00 72.39 P
ATOM 25 OP1 A B 161 97.074 34.615 3.475 1.00 70.18 O
ATOM 26 OP2 A B 161 99.302 33.922 2.307 1.00 69.61 O
ATOM 27 O5' A B 161 99.082 36.072 3.641 1.00 71.07 O
TER
Atoms:
C2: (109.028,32.581,0.102)
OP1: (109.724,27.093,-5.294)
OP2: (107.888,27.314,-3.483)
C4: (106.978,31.516,0.366)
O5': (109.544,29.144,-3.869)
C3': (111.826,30.285,-2.408)
C1': (110.450,32.144,-1.882)
O4': (110.208,31.784,-3.229)
C5': (110.574,29.845,-4.586)
P: (108.753,27.932,-4.526)
O2: (109.902,33.371,0.486)
C4': (111.224,30.859,-3.680)
C2': (111.724,31.437,-1.416)
O2': (112.815,32.330,-1.501)
N1: (109.233,31.869,-1.088)
N3: (107.889,32.387,0.803)
N4: (105.852,31.380,1.073)
C6: (108.306,30.955,-1.509)
C5: (107.176,30.751,-0.820)
O3': (113.165,29.903,-2.636)
OP1: (109.724,27.093,-5.294)
OP2: (107.888,27.314,-3.483)
C4: (106.978,31.516,0.366)
O5': (109.544,29.144,-3.869)
C3': (111.826,30.285,-2.408)
C1': (110.450,32.144,-1.882)
O4': (110.208,31.784,-3.229)
C5': (110.574,29.845,-4.586)
P: (108.753,27.932,-4.526)
O2: (109.902,33.371,0.486)
C4': (111.224,30.859,-3.680)
C2': (111.724,31.437,-1.416)
O2': (112.815,32.330,-1.501)
N1: (109.233,31.869,-1.088)
N3: (107.889,32.387,0.803)
N4: (105.852,31.380,1.073)
C6: (108.306,30.955,-1.509)
C5: (107.176,30.751,-0.820)
O3': (113.165,29.903,-2.636)
OP1: (99.097,29.284,3.037)
OP2: (101.333,29.526,1.793)
C3': (100.458,33.482,4.875)
C1': (102.523,33.698,6.004)
C5': (100.337,30.952,5.226)
O4': (102.047,32.378,6.195)
C8: (103.812,32.791,4.000)
O2': (100.725,35.132,6.636)
C6: (106.807,34.601,3.879)
C5: (105.569,33.982,4.048)
C4: (104.768,34.444,5.077)
P: (100.576,29.510,3.067)
C4': (100.656,32.303,5.798)
C2': (101.345,34.539,5.514)
C2: (106.244,35.968,5.653)
N1: (107.122,35.618,4.708)
N3: (105.050,35.448,5.925)
N6: (107.692,34.231,2.958)
N7: (104.949,32.947,3.368)
N9: (103.645,33.650,5.061)
O5': (100.827,30.840,3.887)
O3': (99.120,33.874,4.806)
OP2: (101.333,29.526,1.793)
C3': (100.458,33.482,4.875)
C1': (102.523,33.698,6.004)
C5': (100.337,30.952,5.226)
O4': (102.047,32.378,6.195)
C8: (103.812,32.791,4.000)
O2': (100.725,35.132,6.636)
C6: (106.807,34.601,3.879)
C5: (105.569,33.982,4.048)
C4: (104.768,34.444,5.077)
P: (100.576,29.510,3.067)
C4': (100.656,32.303,5.798)
C2': (101.345,34.539,5.514)
C2: (106.244,35.968,5.653)
N1: (107.122,35.618,4.708)
N3: (105.050,35.448,5.925)
N6: (107.692,34.231,2.958)
N7: (104.949,32.947,3.368)
N9: (103.645,33.650,5.061)
O5': (100.827,30.840,3.887)
O3': (99.120,33.874,4.806)
Image (generated by PyMOL):