Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3U5D:11943:11950
Extra
PDB:
ATOM 1 O3' U A1942 11.757 13.712 98.562 1.00 38.11 O
ATOM 2 P C A1943 12.910 14.522 97.835 1.00 43.83 P
ATOM 3 OP1 C A1943 13.900 14.835 98.880 1.00 43.97 O
ATOM 4 OP2 C A1943 12.255 15.650 97.072 1.00 43.96 O
ATOM 5 O5' C A1943 13.482 13.433 96.831 1.00 43.40 O
ATOM 6 C5' C A1943 13.633 12.105 97.254 1.00 43.25 C
ATOM 7 C4' C A1943 13.939 11.194 96.109 1.00 42.87 C
ATOM 8 O4' C A1943 12.723 10.814 95.475 1.00 42.84 O
ATOM 9 C3' C A1943 14.804 11.750 94.987 1.00 42.65 C
ATOM 10 O3' C A1943 16.187 11.643 95.282 1.00 42.54 O
ATOM 11 C2' C A1943 14.409 10.882 93.817 1.00 42.37 C
ATOM 12 O2' C A1943 15.143 9.666 93.857 1.00 42.13 O
ATOM 13 C1' C A1943 12.940 10.566 94.119 1.00 42.55 C
ATOM 14 N1 C A1943 12.001 11.392 93.343 1.00 42.66 N
ATOM 15 C2 C A1943 11.622 11.004 92.073 1.00 42.45 C
ATOM 16 O2 C A1943 12.114 9.951 91.597 1.00 42.17 O
ATOM 17 N3 C A1943 10.741 11.796 91.391 1.00 42.58 N
ATOM 18 C4 C A1943 10.248 12.911 91.937 1.00 42.90 C
ATOM 19 N4 C A1943 9.405 13.656 91.240 1.00 43.03 N
ATOM 20 C5 C A1943 10.617 13.301 93.241 1.00 43.12 C
ATOM 21 C6 C A1943 11.488 12.518 93.888 1.00 42.98 C
ATOM 22 P U A1944 17.275 12.499 94.491 1.00 39.05 P
ATOM 23 OP1 U A1944 18.466 12.518 95.298 1.00 39.08 O
ATOM 24 OP2 U A1944 16.676 13.741 94.113 1.00 39.24 O
ATOM 25 O5' U A1944 17.538 11.646 93.215 1.00 38.68 O
TER
ATOM 1 O3' A B1949 8.639 17.827 87.044 1.00 43.61 O
ATOM 2 P A B1950 7.634 18.368 85.904 1.00 37.55 P
ATOM 3 OP1 A B1950 8.438 19.001 84.812 1.00 37.42 O
ATOM 4 OP2 A B1950 6.626 19.174 86.614 1.00 37.94 O
ATOM 5 O5' A B1950 6.975 17.047 85.376 1.00 37.34 O
ATOM 6 C5' A B1950 6.388 16.171 86.289 1.00 37.38 C
ATOM 7 C4' A B1950 5.861 14.946 85.629 1.00 37.18 C
ATOM 8 O4' A B1950 6.948 14.084 85.245 1.00 36.83 O
ATOM 9 C3' A B1950 5.012 14.081 86.507 1.00 37.27 C
ATOM 10 O3' A B1950 3.704 14.594 86.609 1.00 37.59 O
ATOM 11 C2' A B1950 5.121 12.739 85.808 1.00 36.97 C
ATOM 12 O2' A B1950 4.386 12.751 84.589 1.00 36.96 O
ATOM 13 C1' A B1950 6.599 12.748 85.448 1.00 36.69 C
ATOM 14 N9 A B1950 7.443 12.210 86.529 1.00 36.60 N
ATOM 15 C8 A B1950 7.741 12.799 87.718 1.00 36.78 C
ATOM 16 N7 A B1950 8.495 12.088 88.510 1.00 36.66 N
ATOM 17 C5 A B1950 8.716 10.922 87.785 1.00 36.37 C
ATOM 18 C6 A B1950 9.475 9.755 88.066 1.00 36.13 C
ATOM 19 N6 A B1950 10.166 9.515 89.165 1.00 36.14 N
ATOM 20 N1 A B1950 9.508 8.815 87.141 1.00 35.89 N
ATOM 21 C2 A B1950 8.817 9.053 86.009 1.00 35.89 C
ATOM 22 N3 A B1950 8.101 10.099 85.611 1.00 36.09 N
ATOM 23 C4 A B1950 8.081 11.013 86.560 1.00 36.33 C
ATOM 24 P A B1951 2.701 14.060 87.713 1.00 40.95 P
ATOM 25 OP1 A B1951 1.581 15.021 87.761 1.00 41.32 O
ATOM 26 OP2 A B1951 3.487 13.814 88.944 1.00 40.93 O
ATOM 27 O5' A B1951 2.228 12.683 87.101 1.00 40.74 O
TER
ATOM 2 P C A1943 12.910 14.522 97.835 1.00 43.83 P
ATOM 3 OP1 C A1943 13.900 14.835 98.880 1.00 43.97 O
ATOM 4 OP2 C A1943 12.255 15.650 97.072 1.00 43.96 O
ATOM 5 O5' C A1943 13.482 13.433 96.831 1.00 43.40 O
ATOM 6 C5' C A1943 13.633 12.105 97.254 1.00 43.25 C
ATOM 7 C4' C A1943 13.939 11.194 96.109 1.00 42.87 C
ATOM 8 O4' C A1943 12.723 10.814 95.475 1.00 42.84 O
ATOM 9 C3' C A1943 14.804 11.750 94.987 1.00 42.65 C
ATOM 10 O3' C A1943 16.187 11.643 95.282 1.00 42.54 O
ATOM 11 C2' C A1943 14.409 10.882 93.817 1.00 42.37 C
ATOM 12 O2' C A1943 15.143 9.666 93.857 1.00 42.13 O
ATOM 13 C1' C A1943 12.940 10.566 94.119 1.00 42.55 C
ATOM 14 N1 C A1943 12.001 11.392 93.343 1.00 42.66 N
ATOM 15 C2 C A1943 11.622 11.004 92.073 1.00 42.45 C
ATOM 16 O2 C A1943 12.114 9.951 91.597 1.00 42.17 O
ATOM 17 N3 C A1943 10.741 11.796 91.391 1.00 42.58 N
ATOM 18 C4 C A1943 10.248 12.911 91.937 1.00 42.90 C
ATOM 19 N4 C A1943 9.405 13.656 91.240 1.00 43.03 N
ATOM 20 C5 C A1943 10.617 13.301 93.241 1.00 43.12 C
ATOM 21 C6 C A1943 11.488 12.518 93.888 1.00 42.98 C
ATOM 22 P U A1944 17.275 12.499 94.491 1.00 39.05 P
ATOM 23 OP1 U A1944 18.466 12.518 95.298 1.00 39.08 O
ATOM 24 OP2 U A1944 16.676 13.741 94.113 1.00 39.24 O
ATOM 25 O5' U A1944 17.538 11.646 93.215 1.00 38.68 O
TER
ATOM 1 O3' A B1949 8.639 17.827 87.044 1.00 43.61 O
ATOM 2 P A B1950 7.634 18.368 85.904 1.00 37.55 P
ATOM 3 OP1 A B1950 8.438 19.001 84.812 1.00 37.42 O
ATOM 4 OP2 A B1950 6.626 19.174 86.614 1.00 37.94 O
ATOM 5 O5' A B1950 6.975 17.047 85.376 1.00 37.34 O
ATOM 6 C5' A B1950 6.388 16.171 86.289 1.00 37.38 C
ATOM 7 C4' A B1950 5.861 14.946 85.629 1.00 37.18 C
ATOM 8 O4' A B1950 6.948 14.084 85.245 1.00 36.83 O
ATOM 9 C3' A B1950 5.012 14.081 86.507 1.00 37.27 C
ATOM 10 O3' A B1950 3.704 14.594 86.609 1.00 37.59 O
ATOM 11 C2' A B1950 5.121 12.739 85.808 1.00 36.97 C
ATOM 12 O2' A B1950 4.386 12.751 84.589 1.00 36.96 O
ATOM 13 C1' A B1950 6.599 12.748 85.448 1.00 36.69 C
ATOM 14 N9 A B1950 7.443 12.210 86.529 1.00 36.60 N
ATOM 15 C8 A B1950 7.741 12.799 87.718 1.00 36.78 C
ATOM 16 N7 A B1950 8.495 12.088 88.510 1.00 36.66 N
ATOM 17 C5 A B1950 8.716 10.922 87.785 1.00 36.37 C
ATOM 18 C6 A B1950 9.475 9.755 88.066 1.00 36.13 C
ATOM 19 N6 A B1950 10.166 9.515 89.165 1.00 36.14 N
ATOM 20 N1 A B1950 9.508 8.815 87.141 1.00 35.89 N
ATOM 21 C2 A B1950 8.817 9.053 86.009 1.00 35.89 C
ATOM 22 N3 A B1950 8.101 10.099 85.611 1.00 36.09 N
ATOM 23 C4 A B1950 8.081 11.013 86.560 1.00 36.33 C
ATOM 24 P A B1951 2.701 14.060 87.713 1.00 40.95 P
ATOM 25 OP1 A B1951 1.581 15.021 87.761 1.00 41.32 O
ATOM 26 OP2 A B1951 3.487 13.814 88.944 1.00 40.93 O
ATOM 27 O5' A B1951 2.228 12.683 87.101 1.00 40.74 O
TER
Atoms:
C2: (11.622,11.004,92.073)
OP1: (13.900,14.835,98.880)
OP2: (12.255,15.650,97.072)
C4: (10.248,12.911,91.937)
O5': (13.482,13.433,96.831)
C3': (14.804,11.750,94.987)
C1': (12.940,10.566,94.119)
O4': (12.723,10.814,95.475)
C5': (13.633,12.105,97.254)
P: (12.910,14.522,97.835)
O2: (12.114,9.951,91.597)
C4': (13.939,11.194,96.109)
C2': (14.409,10.882,93.817)
O2': (15.143,9.666,93.857)
N1: (12.001,11.392,93.343)
N3: (10.741,11.796,91.391)
N4: (9.405,13.656,91.240)
C6: (11.488,12.518,93.888)
C5: (10.617,13.301,93.241)
O3': (16.187,11.643,95.282)
OP1: (13.900,14.835,98.880)
OP2: (12.255,15.650,97.072)
C4: (10.248,12.911,91.937)
O5': (13.482,13.433,96.831)
C3': (14.804,11.750,94.987)
C1': (12.940,10.566,94.119)
O4': (12.723,10.814,95.475)
C5': (13.633,12.105,97.254)
P: (12.910,14.522,97.835)
O2: (12.114,9.951,91.597)
C4': (13.939,11.194,96.109)
C2': (14.409,10.882,93.817)
O2': (15.143,9.666,93.857)
N1: (12.001,11.392,93.343)
N3: (10.741,11.796,91.391)
N4: (9.405,13.656,91.240)
C6: (11.488,12.518,93.888)
C5: (10.617,13.301,93.241)
O3': (16.187,11.643,95.282)
OP1: (8.438,19.001,84.812)
OP2: (6.626,19.174,86.614)
C3': (5.012,14.081,86.507)
C1': (6.599,12.748,85.448)
C5': (6.388,16.171,86.289)
O4': (6.948,14.084,85.245)
C8: (7.741,12.799,87.718)
O2': (4.386,12.751,84.589)
C6: (9.475,9.755,88.066)
C5: (8.716,10.922,87.785)
C4: (8.081,11.013,86.560)
P: (7.634,18.368,85.904)
C4': (5.861,14.946,85.629)
C2': (5.121,12.739,85.808)
C2: (8.817,9.053,86.009)
N1: (9.508,8.815,87.141)
N3: (8.101,10.099,85.611)
N6: (10.166,9.515,89.165)
N7: (8.495,12.088,88.510)
N9: (7.443,12.210,86.529)
O5': (6.975,17.047,85.376)
O3': (3.704,14.594,86.609)
OP2: (6.626,19.174,86.614)
C3': (5.012,14.081,86.507)
C1': (6.599,12.748,85.448)
C5': (6.388,16.171,86.289)
O4': (6.948,14.084,85.245)
C8: (7.741,12.799,87.718)
O2': (4.386,12.751,84.589)
C6: (9.475,9.755,88.066)
C5: (8.716,10.922,87.785)
C4: (8.081,11.013,86.560)
P: (7.634,18.368,85.904)
C4': (5.861,14.946,85.629)
C2': (5.121,12.739,85.808)
C2: (8.817,9.053,86.009)
N1: (9.508,8.815,87.141)
N3: (8.101,10.099,85.611)
N6: (10.166,9.515,89.165)
N7: (8.495,12.088,88.510)
N9: (7.443,12.210,86.529)
O5': (6.975,17.047,85.376)
O3': (3.704,14.594,86.609)
Image (generated by PyMOL):