Doublet info:
Details
Nucleotide types:
CA
Description:
None: None
Program used:
None
Has errors:
False
Source
PDB id:
3OXD:A38:A63
Extra
PDB:
ATOM 1 O3' G A 37 -16.511 -54.953 10.610 1.00 79.37 O
ATOM 2 P C A 38 -17.891 -54.477 9.940 1.00 80.08 P
ATOM 3 OP1 C A 38 -18.719 -55.681 9.692 1.00 81.44 O
ATOM 4 OP2 C A 38 -17.582 -53.561 8.816 1.00 79.97 O
ATOM 5 O5' C A 38 -18.556 -53.619 11.114 1.00 77.73 O
ATOM 6 C5' C A 38 -18.775 -54.186 12.406 1.00 76.88 C
ATOM 7 C4' C A 38 -19.136 -53.091 13.397 1.00 75.07 C
ATOM 8 O4' C A 38 -18.130 -52.047 13.334 1.00 74.04 O
ATOM 9 C3' C A 38 -20.478 -52.397 13.156 1.00 74.57 C
ATOM 10 O3' C A 38 -21.135 -52.178 14.405 1.00 73.59 O
ATOM 11 C2' C A 38 -20.074 -51.091 12.467 1.00 73.66 C
ATOM 12 O2' C A 38 -21.011 -50.049 12.649 1.00 72.77 O
ATOM 13 C1' C A 38 -18.763 -50.792 13.193 1.00 72.87 C
ATOM 14 N1 C A 38 -17.835 -49.832 12.500 1.00 72.11 N
ATOM 15 C2 C A 38 -17.374 -48.690 13.183 1.00 70.76 C
ATOM 16 O2 C A 38 -17.736 -48.482 14.346 1.00 70.27 O
ATOM 17 N3 C A 38 -16.535 -47.828 12.543 1.00 70.13 N
ATOM 18 C4 C A 38 -16.158 -48.072 11.283 1.00 70.81 C
ATOM 19 N4 C A 38 -15.340 -47.197 10.692 1.00 70.10 N
ATOM 20 C5 C A 38 -16.611 -49.224 10.571 1.00 72.42 C
ATOM 21 C6 C A 38 -17.438 -50.066 11.211 1.00 72.96 C
ATOM 22 P A A 39 -22.732 -52.247 14.532 1.00 74.13 P
ATOM 23 OP1 A A 39 -23.091 -53.615 14.964 1.00 75.70 O
ATOM 24 OP2 A A 39 -23.339 -51.677 13.304 1.00 74.35 O
ATOM 25 O5' A A 39 -23.039 -51.257 15.746 1.00 71.77 O
TER
ATOM 1 O3' A B 62 -15.056 -42.591 7.146 1.00 64.75 O
ATOM 2 P A B 63 -13.692 -43.305 7.604 1.00 63.99 P
ATOM 3 OP1 A B 63 -12.697 -43.058 6.533 1.00 64.71 O
ATOM 4 OP2 A B 63 -13.973 -44.697 8.034 1.00 63.74 O
ATOM 5 O5' A B 63 -13.289 -42.478 8.916 1.00 61.38 O
ATOM 6 C5' A B 63 -12.919 -41.109 8.815 1.00 59.53 C
ATOM 7 C4' A B 63 -13.001 -40.435 10.166 1.00 57.74 C
ATOM 8 O4' A B 63 -14.298 -40.662 10.769 1.00 57.49 O
ATOM 9 C3' A B 63 -12.041 -40.983 11.199 1.00 57.07 C
ATOM 10 O3' A B 63 -10.758 -40.428 11.008 1.00 56.97 O
ATOM 11 C2' A B 63 -12.704 -40.507 12.483 1.00 56.30 C
ATOM 12 O2' A B 63 -12.562 -39.117 12.694 1.00 57.06 O
ATOM 13 C1' A B 63 -14.159 -40.818 12.168 1.00 55.97 C
ATOM 14 N9 A B 63 -14.572 -42.168 12.562 1.00 55.17 N
ATOM 15 C8 A B 63 -14.626 -43.289 11.779 1.00 55.85 C
ATOM 16 N7 A B 63 -15.035 -44.362 12.411 1.00 55.54 N
ATOM 17 C5 A B 63 -15.267 -43.918 13.700 1.00 54.04 C
ATOM 18 C6 A B 63 -15.723 -44.566 14.867 1.00 53.25 C
ATOM 19 N6 A B 63 -16.040 -45.862 14.930 1.00 53.32 N
ATOM 20 N1 A B 63 -15.843 -43.826 15.985 1.00 52.93 N
ATOM 21 C2 A B 63 -15.533 -42.523 15.947 1.00 52.84 C
ATOM 22 N3 A B 63 -15.099 -41.808 14.909 1.00 53.04 N
ATOM 23 C4 A B 63 -14.986 -42.569 13.808 1.00 53.74 C
ATOM 24 P A B 64 -9.476 -41.345 11.263 1.00 56.84 P
ATOM 25 OP1 A B 64 -8.322 -40.671 10.626 1.00 56.17 O
ATOM 26 OP2 A B 64 -9.812 -42.745 10.916 1.00 57.20 O
ATOM 27 O5' A B 64 -9.353 -41.277 12.855 1.00 56.61 O
TER
ATOM 2 P C A 38 -17.891 -54.477 9.940 1.00 80.08 P
ATOM 3 OP1 C A 38 -18.719 -55.681 9.692 1.00 81.44 O
ATOM 4 OP2 C A 38 -17.582 -53.561 8.816 1.00 79.97 O
ATOM 5 O5' C A 38 -18.556 -53.619 11.114 1.00 77.73 O
ATOM 6 C5' C A 38 -18.775 -54.186 12.406 1.00 76.88 C
ATOM 7 C4' C A 38 -19.136 -53.091 13.397 1.00 75.07 C
ATOM 8 O4' C A 38 -18.130 -52.047 13.334 1.00 74.04 O
ATOM 9 C3' C A 38 -20.478 -52.397 13.156 1.00 74.57 C
ATOM 10 O3' C A 38 -21.135 -52.178 14.405 1.00 73.59 O
ATOM 11 C2' C A 38 -20.074 -51.091 12.467 1.00 73.66 C
ATOM 12 O2' C A 38 -21.011 -50.049 12.649 1.00 72.77 O
ATOM 13 C1' C A 38 -18.763 -50.792 13.193 1.00 72.87 C
ATOM 14 N1 C A 38 -17.835 -49.832 12.500 1.00 72.11 N
ATOM 15 C2 C A 38 -17.374 -48.690 13.183 1.00 70.76 C
ATOM 16 O2 C A 38 -17.736 -48.482 14.346 1.00 70.27 O
ATOM 17 N3 C A 38 -16.535 -47.828 12.543 1.00 70.13 N
ATOM 18 C4 C A 38 -16.158 -48.072 11.283 1.00 70.81 C
ATOM 19 N4 C A 38 -15.340 -47.197 10.692 1.00 70.10 N
ATOM 20 C5 C A 38 -16.611 -49.224 10.571 1.00 72.42 C
ATOM 21 C6 C A 38 -17.438 -50.066 11.211 1.00 72.96 C
ATOM 22 P A A 39 -22.732 -52.247 14.532 1.00 74.13 P
ATOM 23 OP1 A A 39 -23.091 -53.615 14.964 1.00 75.70 O
ATOM 24 OP2 A A 39 -23.339 -51.677 13.304 1.00 74.35 O
ATOM 25 O5' A A 39 -23.039 -51.257 15.746 1.00 71.77 O
TER
ATOM 1 O3' A B 62 -15.056 -42.591 7.146 1.00 64.75 O
ATOM 2 P A B 63 -13.692 -43.305 7.604 1.00 63.99 P
ATOM 3 OP1 A B 63 -12.697 -43.058 6.533 1.00 64.71 O
ATOM 4 OP2 A B 63 -13.973 -44.697 8.034 1.00 63.74 O
ATOM 5 O5' A B 63 -13.289 -42.478 8.916 1.00 61.38 O
ATOM 6 C5' A B 63 -12.919 -41.109 8.815 1.00 59.53 C
ATOM 7 C4' A B 63 -13.001 -40.435 10.166 1.00 57.74 C
ATOM 8 O4' A B 63 -14.298 -40.662 10.769 1.00 57.49 O
ATOM 9 C3' A B 63 -12.041 -40.983 11.199 1.00 57.07 C
ATOM 10 O3' A B 63 -10.758 -40.428 11.008 1.00 56.97 O
ATOM 11 C2' A B 63 -12.704 -40.507 12.483 1.00 56.30 C
ATOM 12 O2' A B 63 -12.562 -39.117 12.694 1.00 57.06 O
ATOM 13 C1' A B 63 -14.159 -40.818 12.168 1.00 55.97 C
ATOM 14 N9 A B 63 -14.572 -42.168 12.562 1.00 55.17 N
ATOM 15 C8 A B 63 -14.626 -43.289 11.779 1.00 55.85 C
ATOM 16 N7 A B 63 -15.035 -44.362 12.411 1.00 55.54 N
ATOM 17 C5 A B 63 -15.267 -43.918 13.700 1.00 54.04 C
ATOM 18 C6 A B 63 -15.723 -44.566 14.867 1.00 53.25 C
ATOM 19 N6 A B 63 -16.040 -45.862 14.930 1.00 53.32 N
ATOM 20 N1 A B 63 -15.843 -43.826 15.985 1.00 52.93 N
ATOM 21 C2 A B 63 -15.533 -42.523 15.947 1.00 52.84 C
ATOM 22 N3 A B 63 -15.099 -41.808 14.909 1.00 53.04 N
ATOM 23 C4 A B 63 -14.986 -42.569 13.808 1.00 53.74 C
ATOM 24 P A B 64 -9.476 -41.345 11.263 1.00 56.84 P
ATOM 25 OP1 A B 64 -8.322 -40.671 10.626 1.00 56.17 O
ATOM 26 OP2 A B 64 -9.812 -42.745 10.916 1.00 57.20 O
ATOM 27 O5' A B 64 -9.353 -41.277 12.855 1.00 56.61 O
TER
Atoms:
C2: (-17.374,-48.690,13.183)
OP1: (-18.719,-55.681,9.692)
OP2: (-17.582,-53.561,8.816)
C4: (-16.158,-48.072,11.283)
O5': (-18.556,-53.619,11.114)
C3': (-20.478,-52.397,13.156)
C1': (-18.763,-50.792,13.193)
O4': (-18.130,-52.047,13.334)
C5': (-18.775,-54.186,12.406)
P: (-17.891,-54.477,9.940)
O2: (-17.736,-48.482,14.346)
C4': (-19.136,-53.091,13.397)
C2': (-20.074,-51.091,12.467)
O2': (-21.011,-50.049,12.649)
N1: (-17.835,-49.832,12.500)
N3: (-16.535,-47.828,12.543)
N4: (-15.340,-47.197,10.692)
C6: (-17.438,-50.066,11.211)
C5: (-16.611,-49.224,10.571)
O3': (-21.135,-52.178,14.405)
OP1: (-18.719,-55.681,9.692)
OP2: (-17.582,-53.561,8.816)
C4: (-16.158,-48.072,11.283)
O5': (-18.556,-53.619,11.114)
C3': (-20.478,-52.397,13.156)
C1': (-18.763,-50.792,13.193)
O4': (-18.130,-52.047,13.334)
C5': (-18.775,-54.186,12.406)
P: (-17.891,-54.477,9.940)
O2: (-17.736,-48.482,14.346)
C4': (-19.136,-53.091,13.397)
C2': (-20.074,-51.091,12.467)
O2': (-21.011,-50.049,12.649)
N1: (-17.835,-49.832,12.500)
N3: (-16.535,-47.828,12.543)
N4: (-15.340,-47.197,10.692)
C6: (-17.438,-50.066,11.211)
C5: (-16.611,-49.224,10.571)
O3': (-21.135,-52.178,14.405)
OP1: (-12.697,-43.058,6.533)
OP2: (-13.973,-44.697,8.034)
C3': (-12.041,-40.983,11.199)
C1': (-14.159,-40.818,12.168)
C5': (-12.919,-41.109,8.815)
O4': (-14.298,-40.662,10.769)
C8: (-14.626,-43.289,11.779)
O2': (-12.562,-39.117,12.694)
C6: (-15.723,-44.566,14.867)
C5: (-15.267,-43.918,13.700)
C4: (-14.986,-42.569,13.808)
P: (-13.692,-43.305,7.604)
C4': (-13.001,-40.435,10.166)
C2': (-12.704,-40.507,12.483)
C2: (-15.533,-42.523,15.947)
N1: (-15.843,-43.826,15.985)
N3: (-15.099,-41.808,14.909)
N6: (-16.040,-45.862,14.930)
N7: (-15.035,-44.362,12.411)
N9: (-14.572,-42.168,12.562)
O5': (-13.289,-42.478,8.916)
O3': (-10.758,-40.428,11.008)
OP2: (-13.973,-44.697,8.034)
C3': (-12.041,-40.983,11.199)
C1': (-14.159,-40.818,12.168)
C5': (-12.919,-41.109,8.815)
O4': (-14.298,-40.662,10.769)
C8: (-14.626,-43.289,11.779)
O2': (-12.562,-39.117,12.694)
C6: (-15.723,-44.566,14.867)
C5: (-15.267,-43.918,13.700)
C4: (-14.986,-42.569,13.808)
P: (-13.692,-43.305,7.604)
C4': (-13.001,-40.435,10.166)
C2': (-12.704,-40.507,12.483)
C2: (-15.533,-42.523,15.947)
N1: (-15.843,-43.826,15.985)
N3: (-15.099,-41.808,14.909)
N6: (-16.040,-45.862,14.930)
N7: (-15.035,-44.362,12.411)
N9: (-14.572,-42.168,12.562)
O5': (-13.289,-42.478,8.916)
O3': (-10.758,-40.428,11.008)
Image (generated by PyMOL):