ClaRNA

Doublet info:

Details

Nucleotide types: GA
Description: None: None
Program used: None
Has errors: False

Source

PDB id: 3U5D:1853:1869

Extra

PDB:
ATOM 1 O3' G A 852 23.996 -10.911 102.341 1.00 36.79 O
ATOM 2 P G A 853 23.554 -11.069 103.853 1.00 41.50 P
ATOM 3 OP1 G A 853 24.345 -12.211 104.436 1.00 41.59 O
ATOM 4 OP2 G A 853 22.083 -11.155 103.857 1.00 41.59 O
ATOM 5 O5' G A 853 24.054 -9.705 104.484 1.00 41.63 O
ATOM 6 C5' G A 853 23.447 -8.462 104.180 1.00 41.62 C
ATOM 7 C4' G A 853 24.045 -7.381 105.029 1.00 41.81 C
ATOM 8 O4' G A 853 25.273 -6.931 104.422 1.00 41.61 O
ATOM 9 C3' G A 853 23.256 -6.103 105.182 1.00 41.93 C
ATOM 10 O3' G A 853 22.216 -6.212 106.116 1.00 42.22 O
ATOM 11 C2' G A 853 24.347 -5.172 105.638 1.00 42.02 C
ATOM 12 O2' G A 853 24.774 -5.532 106.943 1.00 42.30 O
ATOM 13 C1' G A 853 25.448 -5.568 104.679 1.00 41.71 C
ATOM 14 N9 G A 853 25.333 -4.848 103.418 1.00 41.45 N
ATOM 15 C8 G A 853 25.037 -5.340 102.214 1.00 41.18 C
ATOM 16 N7 G A 853 25.016 -4.368 101.341 1.00 41.03 N
ATOM 17 C5 G A 853 25.339 -3.216 102.034 1.00 41.22 C
ATOM 18 C6 G A 853 25.453 -1.882 101.634 1.00 41.20 C
ATOM 19 O6 G A 853 25.289 -1.453 100.513 1.00 41.00 O
ATOM 20 N1 G A 853 25.775 -1.014 102.636 1.00 41.47 N
ATOM 21 C2 G A 853 25.954 -1.425 103.920 1.00 41.72 C
ATOM 22 N2 G A 853 26.286 -0.494 104.825 1.00 41.98 N
ATOM 23 N3 G A 853 25.828 -2.674 104.331 1.00 41.75 N
ATOM 24 C4 G A 853 25.518 -3.507 103.328 1.00 41.49 C
ATOM 25 P G A 854 20.779 -5.566 105.828 1.00 36.61 P
ATOM 26 OP1 G A 854 19.856 -6.182 106.824 1.00 36.89 O
ATOM 27 OP2 G A 854 20.494 -5.744 104.327 1.00 36.27 O
ATOM 28 O5' G A 854 20.987 -4.021 106.133 1.00 36.74 O
TER

ATOM 1 O3' G B 868 25.702 -4.419 90.591 1.00 38.18 O
ATOM 2 P A B 869 27.205 -4.582 91.159 1.00 41.47 P
ATOM 3 OP1 A B 869 28.099 -3.637 90.369 1.00 41.34 O
ATOM 4 OP2 A B 869 27.497 -6.001 91.158 1.00 41.40 O
ATOM 5 O5' A B 869 27.074 -4.087 92.635 1.00 41.73 O
ATOM 6 C5' A B 869 27.716 -2.911 93.073 1.00 41.82 C
ATOM 7 C4' A B 869 28.081 -3.042 94.514 1.00 42.04 C
ATOM 8 O4' A B 869 26.937 -3.614 95.262 1.00 42.20 O
ATOM 9 C3' A B 869 29.221 -3.990 94.755 1.00 41.99 C
ATOM 10 O3' A B 869 29.838 -3.619 95.969 1.00 42.20 O
ATOM 11 C2' A B 869 28.472 -5.311 94.921 1.00 42.00 C
ATOM 12 O2' A B 869 29.192 -6.364 95.489 1.00 42.03 O
ATOM 13 C1' A B 869 27.323 -4.881 95.793 1.00 42.22 C
ATOM 14 N9 A B 869 26.189 -5.796 95.734 1.00 42.24 N
ATOM 15 C8 A B 869 25.783 -6.391 94.596 1.00 42.04 C
ATOM 16 N7 A B 869 24.782 -7.183 94.755 1.00 42.10 N
ATOM 17 C5 A B 869 24.478 -7.116 96.083 1.00 42.36 C
ATOM 18 C6 A B 869 23.486 -7.727 96.840 1.00 42.54 C
ATOM 19 N6 A B 869 22.562 -8.554 96.395 1.00 42.50 N
ATOM 20 N1 A B 869 23.476 -7.449 98.135 1.00 42.79 N
ATOM 21 C2 A B 869 24.373 -6.597 98.634 1.00 42.86 C
ATOM 22 N3 A B 869 25.353 -5.968 98.016 1.00 42.70 N
ATOM 23 C4 A B 869 25.358 -6.272 96.713 1.00 42.45 C
ATOM 24 P A B 870 31.422 -3.474 96.072 1.00 36.55 P
ATOM 25 OP1 A B 870 31.959 -3.574 94.731 1.00 36.28 O
ATOM 26 OP2 A B 870 31.853 -4.436 97.062 1.00 36.68 O
ATOM 27 O5' A B 870 31.615 -2.014 96.633 1.00 36.72 O
TER

Atoms:
OP1: (24.345,-12.211,104.436)
OP2: (22.083,-11.155,103.857)
C3': (23.256,-6.103,105.182)
C1': (25.448,-5.568,104.679)
C5': (23.447,-8.462,104.180)
O6: (25.289,-1.453,100.513)
O4': (25.273,-6.931,104.422)
C8: (25.037,-5.340,102.214)
C2: (25.954,-1.425,103.920)
C6: (25.453,-1.882,101.634)
C5: (25.339,-3.216,102.034)
C4: (25.518,-3.507,103.328)
P: (23.554,-11.069,103.853)
C4': (24.045,-7.381,105.029)
C2': (24.347,-5.172,105.638)
O2': (24.774,-5.532,106.943)
N1: (25.775,-1.014,102.636)
N2: (26.286,-0.494,104.825)
N3: (25.828,-2.674,104.331)
N7: (25.016,-4.368,101.341)
N9: (25.333,-4.848,103.418)
O5': (24.054,-9.705,104.484)
O3': (22.216,-6.212,106.116)
OP1: (28.099,-3.637,90.369)
OP2: (27.497,-6.001,91.158)
C3': (29.221,-3.990,94.755)
C1': (27.323,-4.881,95.793)
C5': (27.716,-2.911,93.073)
O4': (26.937,-3.614,95.262)
C8: (25.783,-6.391,94.596)
O2': (29.192,-6.364,95.489)
C6: (23.486,-7.727,96.840)
C5: (24.478,-7.116,96.083)
C4: (25.358,-6.272,96.713)
P: (27.205,-4.582,91.159)
C4': (28.081,-3.042,94.514)
C2': (28.472,-5.311,94.921)
C2: (24.373,-6.597,98.634)
N1: (23.476,-7.449,98.135)
N3: (25.353,-5.968,98.016)
N6: (22.562,-8.554,96.395)
N7: (24.782,-7.183,94.755)
N9: (26.189,-5.796,95.734)
O5': (27.074,-4.087,92.635)
O3': (29.838,-3.619,95.969)
Image (generated by PyMOL):
PyMOL image
show in jmol